Wall clock time and date at job start Wed Apr 1 2020 02:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47364 * 2 1 4 4 H 1.09002 * 109.87477 * 302.57913 * 3 2 1 5 5 C 1.54327 * 110.01199 * 181.48176 * 3 2 1 6 6 H 1.09002 * 110.71988 * 336.68294 * 5 3 2 7 7 N 1.46500 * 110.72265 * 99.77685 * 5 3 2 8 8 C 1.34770 * 120.00475 * 205.00352 * 7 5 3 9 9 O 1.21597 * 119.99579 * 359.97438 * 8 7 5 10 10 C 1.47518 * 120.00716 * 179.97438 * 8 7 5 11 11 C 1.39817 * 120.20790 * 359.97438 * 10 8 7 12 12 C 1.37393 * 120.12240 * 180.09433 * 11 10 8 13 13 C 1.39760 * 120.39280 * 0.02907 * 12 11 10 14 14 C 1.39306 * 119.29502 * 359.71154 * 13 12 11 15 15 C 1.37429 * 120.65325 * 0.14591 * 14 13 12 16 16 C 1.51616 * 107.88585 * 180.75260 * 14 13 12 17 17 C 1.54606 * 102.74590 * 15.73962 * 16 14 13 18 18 N 1.39459 * 129.75567 * 179.27387 * 13 12 11 19 19 C 1.46898 * 110.99766 * 39.78879 * 18 13 12 20 20 C 1.55155 * 102.94186 * 218.31732 * 5 3 2 21 21 C 1.54686 * 101.67746 * 35.33376 * 20 5 3 22 22 N 1.47016 * 109.88471 * 63.59615 * 3 2 1 23 23 C 1.36942 * 125.64494 * 298.47794 * 22 3 2 24 24 H 1.07998 * 120.00111 * 336.16238 * 23 22 3 25 25 C 1.38813 * 119.99635 * 156.15672 * 23 22 3 26 26 N 1.31629 * 119.99860 * 160.51485 * 25 23 22 27 27 Si 1.86797 * 120.00479 * 340.51898 * 25 23 22 28 28 H 1.48499 * 109.47162 * 89.57061 * 27 25 23 29 29 H 1.48497 * 109.46990 * 329.57375 * 27 25 23 30 30 H 1.48496 * 109.47491 * 209.56964 * 27 25 23 31 31 H 1.09007 * 109.46905 * 292.65459 * 1 2 3 32 32 H 1.09007 * 109.47418 * 52.64884 * 1 2 3 33 33 H 1.08997 * 109.47296 * 172.65541 * 1 2 3 34 34 H 1.09007 * 109.47221 * 240.00179 * 2 1 3 35 35 H 1.08999 * 109.47505 * 120.00127 * 2 1 3 36 36 H 0.97006 * 119.99818 * 24.99495 * 7 5 3 37 37 H 1.08001 * 119.93700 * 0.12368 * 11 10 8 38 38 H 1.07999 * 119.79912 * 180.02562 * 12 11 10 39 39 H 1.07995 * 120.01923 * 180.02562 * 15 14 13 40 40 H 1.09003 * 110.76131 * 134.05461 * 16 14 13 41 41 H 1.09006 * 110.75632 * 257.24248 * 16 14 13 42 42 H 1.09000 * 110.77625 * 92.79644 * 17 16 14 43 43 H 1.09003 * 110.77717 * 216.03254 * 17 16 14 44 44 H 1.09010 * 109.47285 * 59.86899 * 19 18 13 45 45 H 1.08994 * 109.47111 * 179.86756 * 19 18 13 46 46 H 1.09008 * 109.47324 * 299.87403 * 19 18 13 47 47 H 1.09004 * 111.00571 * 153.57692 * 20 5 3 48 48 H 1.09003 * 111.00594 * 277.42906 * 20 5 3 49 49 H 1.08995 * 110.39563 * 204.36445 * 21 20 5 50 50 H 1.09000 * 110.23764 * 82.11096 * 21 20 5 51 51 H 0.96997 * 120.00170 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6431 1.9759 -0.8638 5 6 3.5827 1.4571 -0.0375 6 1 3.9868 0.5212 0.3483 7 7 4.0659 1.7064 -1.3979 8 6 5.2891 1.2783 -1.7677 9 8 5.9920 0.6856 -0.9719 10 6 5.7754 1.5288 -3.1377 11 6 4.9707 2.2094 -4.0564 12 6 5.4246 2.4399 -5.3325 13 6 6.6913 1.9970 -5.7233 14 6 7.4919 1.3241 -4.8031 15 6 7.0461 1.0923 -3.5240 16 6 8.8011 0.9824 -5.4872 17 6 8.7812 1.8933 -6.7363 18 7 7.3349 2.1104 -6.9552 19 6 7.0857 3.4256 -7.5603 20 6 3.9419 2.6387 0.9018 21 6 2.8344 2.5322 1.9764 22 7 1.6271 2.1189 1.2383 23 6 0.3349 2.3344 1.6371 24 1 -0.4586 2.3633 0.9050 25 6 0.0449 2.5157 2.9825 26 7 -1.0836 3.0908 3.3408 27 14 1.2561 1.9437 4.2844 28 1 2.2105 3.0401 4.5885 29 1 2.0028 0.7629 3.7812 30 1 0.5181 1.5736 5.5187 31 1 -0.3633 0.3959 0.9484 32 1 -0.3634 0.6235 -0.8170 33 1 -0.3634 -1.0192 -0.1314 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.5052 2.1794 -2.0326 37 1 3.9906 2.5549 -3.7622 38 1 4.7988 2.9666 -6.0378 39 1 7.6755 0.5699 -2.8188 40 1 9.6476 1.2258 -4.8451 41 1 8.8247 -0.0693 -5.7729 42 1 9.2878 2.8371 -6.5346 43 1 9.2330 1.3885 -7.5902 44 1 7.4565 4.2070 -6.8967 45 1 7.6009 3.4882 -8.5187 46 1 6.0146 3.5578 -7.7141 47 1 4.9299 2.5018 1.3415 48 1 3.8793 3.5904 0.3740 49 1 2.6746 3.4988 2.4542 50 1 3.1008 1.7804 2.7193 51 1 -1.2861 3.2178 4.2808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087786050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:18 Heat of formation + Delta-G solvation = 11.303912 kcal Electronic energy + Delta-G solvation = -30113.006337 eV Core-core repulsion = 26205.105783 eV Total energy + Delta-G solvation = -3907.900554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.90655 -40.99969 -39.56022 -37.42167 -35.71886 -34.21592 -33.99376 -33.73209 -31.64097 -30.76876 -29.92894 -28.63007 -26.97130 -26.13969 -24.42493 -23.85903 -23.42415 -22.27232 -21.95176 -21.51682 -20.76513 -18.91549 -18.58020 -17.75800 -17.43048 -17.00542 -16.95743 -16.55439 -16.22020 -15.91987 -15.45184 -15.31477 -15.06209 -14.85497 -14.70045 -14.53492 -14.20858 -14.06191 -13.89610 -13.85396 -13.69765 -13.61604 -13.46641 -13.04434 -12.96890 -12.86266 -12.60484 -12.50657 -12.37177 -12.33627 -12.04984 -11.94982 -11.88607 -11.68682 -11.52809 -11.29880 -11.02496 -10.95178 -10.69753 -10.07804 -9.90069 -8.95828 -8.77991 -8.12127 -5.40488 -0.18553 0.36124 1.31369 1.40589 1.47443 1.77583 2.05401 2.44525 2.62218 2.86865 3.10051 3.30605 3.50044 3.64542 3.65677 3.75805 3.78119 3.97326 4.10756 4.14286 4.19053 4.23801 4.24375 4.40434 4.41859 4.46041 4.50624 4.53081 4.60749 4.67662 4.72565 4.82894 4.84785 4.91755 4.93411 4.98128 4.99391 5.00853 5.07895 5.13379 5.18574 5.20145 5.24702 5.35394 5.37653 5.54248 5.59358 5.70618 5.81861 5.88704 6.10393 6.18155 6.53826 6.80397 7.20129 7.58280 8.15640 9.07229 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023319 B = 0.002302 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.433337 B =12159.347037 C =12489.831617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.156 3.844 4 H 0.061 0.939 5 C 0.148 3.852 6 H 0.085 0.915 7 N -0.699 5.699 8 C 0.564 3.436 9 O -0.583 6.583 10 C -0.177 4.177 11 C -0.050 4.050 12 C -0.150 4.150 13 C 0.119 3.881 14 C -0.167 4.167 15 C -0.031 4.031 16 C -0.084 4.084 17 C 0.046 3.954 18 N -0.490 5.490 19 C 0.013 3.987 20 C -0.127 4.127 21 C 0.105 3.895 22 N -0.613 5.613 23 C -0.200 4.200 24 H 0.075 0.925 25 C -0.033 4.033 26 N -0.956 5.956 27 Si 0.931 3.069 28 H -0.280 1.280 29 H -0.268 1.268 30 H -0.313 1.313 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.413 0.587 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.115 0.885 44 H 0.043 0.957 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.046 0.954 50 H 0.019 0.981 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.325 -0.503 -25.174 32.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C 0.050 3.950 4 H 0.078 0.922 5 C 0.042 3.958 6 H 0.103 0.897 7 N -0.351 5.351 8 C 0.354 3.646 9 O -0.465 6.465 10 C -0.181 4.181 11 C -0.069 4.069 12 C -0.171 4.171 13 C 0.019 3.981 14 C -0.170 4.170 15 C -0.050 4.050 16 C -0.121 4.121 17 C -0.079 4.079 18 N -0.203 5.203 19 C -0.133 4.133 20 C -0.167 4.167 21 C -0.021 4.021 22 N -0.339 5.339 23 C -0.329 4.329 24 H 0.093 0.907 25 C -0.228 4.228 26 N -0.603 5.603 27 Si 0.761 3.239 28 H -0.207 1.207 29 H -0.193 1.193 30 H -0.242 1.242 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.251 0.749 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.142 0.858 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.133 0.867 44 H 0.062 0.938 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.104 0.896 49 H 0.064 0.936 50 H 0.037 0.963 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.491 -1.191 -24.946 32.305 hybrid contribution -0.067 0.326 1.696 1.728 sum 20.425 -0.865 -23.250 30.960 Atomic orbital electron populations 1.21835 0.95768 1.00314 1.02540 1.21845 0.96727 0.96847 1.00596 1.21334 0.91080 0.92603 0.89975 0.92174 1.21752 0.93397 0.98503 0.82154 0.89689 1.45697 1.17189 1.58665 1.13524 1.18456 0.81029 0.77595 0.87544 1.90747 1.57176 1.43729 1.54809 1.19595 0.97145 1.07938 0.93422 1.21255 0.99217 0.94231 0.92220 1.20622 0.94989 1.04605 0.96856 1.20141 0.94575 0.94747 0.88637 1.20666 0.98862 1.04241 0.93260 1.20428 0.94102 0.95639 0.94874 1.21403 0.93944 1.01221 0.95574 1.23423 0.85432 1.00220 0.98802 1.60240 1.10466 1.30865 1.18719 1.22685 1.03972 0.86198 1.00396 1.22998 0.97789 0.99210 0.96673 1.21965 0.87372 0.97622 0.95097 1.44843 1.01046 1.65493 1.22561 1.18482 0.83349 1.39717 0.91346 0.90748 1.25584 0.97395 1.01114 0.98680 1.69902 1.27027 1.46786 1.16618 0.86159 0.78831 0.79569 0.79328 1.20674 1.19339 1.24233 0.92688 0.93259 0.93056 0.90901 0.94155 0.74865 0.83016 0.83184 0.85834 0.88705 0.88854 0.90759 0.86663 0.93825 0.88740 0.89943 0.90288 0.89584 0.93555 0.96294 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 8.85 71.98 0.64 -4.81 16 2 C -0.12 -4.24 5.50 30.59 0.17 -4.07 16 3 C 0.16 5.61 3.02 45.34 0.14 5.74 16 4 H 0.06 2.02 7.72 -2.39 -0.02 2.00 16 5 C 0.15 4.75 2.84 46.18 0.13 4.88 16 6 H 0.09 3.03 7.26 -2.39 -0.02 3.01 16 7 N -0.70 -17.98 5.13 -440.09 -2.26 -20.24 16 8 C 0.56 16.01 7.76 86.69 0.67 16.68 16 9 O -0.58 -21.10 15.99 -4.02 -0.06 -21.16 16 10 C -0.18 -4.05 5.88 -20.07 -0.12 -4.17 16 11 C -0.05 -0.86 9.52 22.45 0.21 -0.64 16 12 C -0.15 -2.29 9.50 22.44 0.21 -2.08 16 13 C 0.12 1.98 5.95 38.55 0.23 2.21 16 14 C -0.17 -3.05 6.22 -19.51 -0.12 -3.17 16 15 C -0.03 -0.69 9.58 22.46 0.22 -0.48 16 16 C -0.08 -1.00 7.04 30.69 0.22 -0.79 16 17 C 0.05 0.41 6.90 86.66 0.60 1.01 16 18 N -0.49 -6.27 5.29 -713.34 -3.77 -10.04 16 19 C 0.01 0.10 9.14 127.69 1.17 1.27 16 20 C -0.13 -4.26 6.76 31.91 0.22 -4.05 16 21 C 0.10 4.42 4.76 86.78 0.41 4.83 16 22 N -0.61 -27.72 2.87 -668.71 -1.92 -29.64 16 23 C -0.20 -10.75 7.75 84.03 0.65 -10.10 16 24 H 0.07 4.26 7.21 -2.91 -0.02 4.24 16 25 C -0.03 -1.93 5.45 84.86 0.46 -1.46 16 26 N -0.96 -59.18 13.97 21.65 0.30 -58.88 16 27 Si 0.93 47.28 24.40 68.60 1.67 48.95 16 28 H -0.28 -13.72 6.93 99.48 0.69 -13.03 16 29 H -0.27 -13.28 6.37 99.48 0.63 -12.65 16 30 H -0.31 -16.30 7.11 99.48 0.71 -15.60 16 31 H 0.05 2.50 5.41 -2.38 -0.01 2.49 16 32 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 2.15 8.14 -2.38 -0.02 2.14 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.41 8.19 6.40 -92.70 -0.59 7.60 16 37 H 0.15 1.86 6.40 -2.91 -0.02 1.84 16 38 H 0.15 1.56 7.34 -2.91 -0.02 1.54 16 39 H 0.12 2.96 7.65 -2.91 -0.02 2.93 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.07 0.51 7.85 -2.39 -0.02 0.50 16 43 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.04 0.35 8.10 -2.38 -0.02 0.33 16 45 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.08 0.59 7.28 -2.38 -0.02 0.57 16 47 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 48 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 49 H 0.05 2.08 7.22 -2.39 -0.02 2.06 16 50 H 0.02 0.86 5.22 -2.39 -0.01 0.85 16 51 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -72.06 391.26 0.32 -71.75 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.25 Total: 18.45 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 6.10 Total: 0.80 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -7.65 Total: -118.79 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.06 Total: -21.16 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.67 Total: 48.95 kcal Total: -72.06 0.32 -71.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087786050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.049 kcal (2) G-P(sol) polarization free energy of solvation -72.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds