Wall clock time and date at job start Wed Apr 1 2020 03:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.91862 * 2 1 4 4 C 1.54915 * 111.00451 * 236.10529 * 2 1 3 5 5 N 1.47419 * 104.83281 * 204.91733 * 4 2 1 6 6 C 1.36940 * 125.64828 * 204.09486 * 5 4 2 7 7 H 1.07997 * 120.00255 * 180.02562 * 6 5 4 8 8 C 1.38817 * 119.99946 * 0.03458 * 6 5 4 9 9 N 1.31623 * 119.99649 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99737 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47556 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46977 * 120.00187 * 10 8 6 13 13 H 1.48507 * 109.46501 * 239.99576 * 10 8 6 14 14 C 1.47020 * 108.70475 * 24.12305 * 5 4 2 15 15 C 1.54328 * 107.27110 * 358.94528 * 14 5 4 16 16 H 1.08997 * 110.71691 * 96.17117 * 15 14 5 17 17 C 1.52999 * 110.71727 * 219.26384 * 15 14 5 18 18 C 1.53001 * 109.47545 * 291.15489 * 17 15 14 19 19 N 1.46498 * 109.46932 * 180.02562 * 18 17 15 20 20 C 1.34779 * 119.99423 * 180.02562 * 19 18 17 21 21 O 1.21552 * 120.00383 * 359.97438 * 20 19 18 22 22 C 1.47847 * 120.00061 * 180.02562 * 20 19 18 23 23 C 1.40022 * 120.55297 * 354.08216 * 22 20 19 24 24 C 1.38357 * 118.28602 * 180.02562 * 23 22 20 25 25 C 1.38350 * 119.30254 * 359.97438 * 24 23 22 26 26 N 1.31929 * 121.08027 * 0.02742 * 25 24 23 27 27 C 1.31693 * 121.87823 * 359.65714 * 26 25 24 28 28 C 1.50700 * 119.71622 * 180.31766 * 27 26 25 29 29 C 1.52995 * 117.49971 * 358.67221 * 28 27 26 30 30 C 1.53004 * 117.49643 * 290.01355 * 28 27 26 31 31 H 1.09002 * 109.46960 * 296.09221 * 1 2 3 32 32 H 1.08997 * 109.46782 * 56.09458 * 1 2 3 33 33 H 1.08997 * 109.46678 * 176.09290 * 1 2 3 34 34 H 1.08994 * 110.36769 * 86.07078 * 4 2 1 35 35 H 1.09005 * 110.36373 * 323.75299 * 4 2 1 36 36 H 0.96997 * 119.99305 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.88663 * 239.52343 * 14 5 4 38 38 H 1.09000 * 110.01098 * 118.43546 * 14 5 4 39 39 H 1.09006 * 109.47429 * 51.16166 * 17 15 14 40 40 H 1.09006 * 109.46724 * 171.15318 * 17 15 14 41 41 H 1.08997 * 109.47056 * 300.00243 * 18 17 15 42 42 H 1.09005 * 109.46509 * 60.00217 * 18 17 15 43 43 H 0.96996 * 120.00471 * 359.97438 * 19 18 17 44 44 H 1.08003 * 120.86049 * 0.02703 * 23 22 20 45 45 H 1.08000 * 120.34900 * 180.02562 * 24 23 22 46 46 H 1.07997 * 119.45945 * 179.97438 * 25 24 23 47 47 H 1.08998 * 115.54847 * 144.35188 * 28 27 26 48 48 H 1.09002 * 117.50104 * 0.02562 * 29 28 27 49 49 H 1.09000 * 117.49946 * 145.02355 * 29 28 27 50 50 H 1.08995 * 117.50312 * 214.98543 * 30 28 27 51 51 H 1.09001 * 117.49701 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4640 -1.5665 -1.6075 7 1 5.4125 -1.8768 -1.1945 8 6 4.2961 -1.4954 -2.9836 9 7 3.1404 -1.1166 -3.4868 10 14 5.7104 -1.9374 -4.1211 11 1 6.8928 -2.3279 -3.3122 12 1 5.3093 -3.0713 -4.9919 13 1 6.0533 -0.7634 -4.9635 14 6 3.4675 -1.2742 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4469 -1.6633 1.4208 17 6 2.2348 0.0838 2.4364 18 6 2.7263 -0.7566 3.6167 19 7 2.8680 0.0974 4.7986 20 6 3.2914 -0.4304 5.9643 21 8 3.5553 -1.6148 6.0350 22 6 3.4340 0.4312 7.1573 23 6 3.2519 1.8162 7.0609 24 6 3.3971 2.5778 8.2068 25 6 3.7139 1.9527 9.3997 26 7 3.8796 0.6453 9.4605 27 6 3.7461 -0.1228 8.3991 28 6 3.9394 -1.6120 8.5256 29 6 4.3182 -2.1608 9.9025 30 6 5.3595 -2.1208 8.7813 31 1 -0.3633 0.4520 0.9230 32 1 -0.3633 0.5733 -0.8529 33 1 -0.3632 -1.0253 -0.0700 34 1 2.1559 -0.1718 -2.0837 35 1 1.4519 -1.6703 -1.4026 36 1 3.0230 -1.0673 -4.4484 37 1 4.2427 -0.5998 1.0598 38 1 3.6663 -2.2884 1.0420 39 1 2.9555 0.8748 2.2285 40 1 1.2699 0.5270 2.6827 41 1 2.0057 -1.5475 3.8246 42 1 3.6912 -1.1997 3.3703 43 1 2.6578 1.0426 4.7421 44 1 3.0046 2.2781 6.1165 45 1 3.2638 3.6489 8.1707 46 1 3.8282 2.5448 10.2956 47 1 3.2900 -2.2250 7.9006 48 1 4.4273 -1.4448 10.7172 49 1 3.9184 -3.1351 10.1834 50 1 5.6443 -3.0687 8.3249 51 1 6.1540 -1.3784 8.8576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103187549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:31 Heat of formation + Delta-G solvation = 43.973102 kcal Electronic energy + Delta-G solvation = -29306.294102 eV Core-core repulsion = 25399.810191 eV Total energy + Delta-G solvation = -3906.483912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.14696 -39.28290 -38.13926 -37.09021 -35.30203 -33.48233 -32.89928 -31.61779 -30.94839 -30.63543 -27.07052 -25.76105 -24.94101 -24.81406 -23.82934 -22.44027 -22.08978 -21.19286 -20.83044 -19.72699 -19.26115 -17.96623 -17.31815 -16.86271 -16.59928 -15.82860 -15.73520 -15.35830 -15.08130 -14.75045 -14.60977 -14.31550 -14.09010 -13.75495 -13.49395 -13.43626 -13.00519 -12.91243 -12.81070 -12.18016 -12.05316 -11.98520 -11.67719 -11.62705 -11.50696 -11.13864 -11.04309 -11.00323 -10.84849 -10.75874 -10.65818 -10.27414 -10.20894 -10.09586 -9.91825 -9.84425 -9.72120 -9.59634 -9.34309 -9.29845 -9.06756 -8.63840 -6.80410 -5.63705 -3.05051 0.28791 0.75426 2.63694 2.92665 3.35908 3.40262 3.46046 3.48450 3.77005 3.87811 4.23641 4.29630 4.37829 4.50322 4.62994 4.83688 4.87428 4.92966 4.95850 5.05075 5.07632 5.26195 5.28404 5.45850 5.52114 5.55134 5.55342 5.56915 5.62797 5.65390 5.74539 5.76102 5.90902 5.95244 6.03001 6.07335 6.13914 6.20086 6.24205 6.25315 6.31154 6.35196 6.55174 6.61876 6.69740 6.83111 7.02017 7.27532 7.53234 7.56354 7.66099 7.88302 8.01409 8.38525 9.24500 9.85412 10.50692 11.40051 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.002047 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.134749 B =13673.396591 C =14487.755857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.067 0.933 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.220 4.220 7 H 0.077 0.923 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.140 3.860 15 C -0.092 4.092 16 H 0.073 0.927 17 C -0.117 4.117 18 C 0.118 3.882 19 N -0.723 5.723 20 C 0.559 3.441 21 O -0.522 6.522 22 C -0.182 4.182 23 C -0.041 4.041 24 C -0.187 4.187 25 C 0.126 3.874 26 N -0.487 5.487 27 C 0.219 3.781 28 C -0.115 4.115 29 C -0.168 4.168 30 C -0.151 4.151 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.012 0.988 36 H 0.251 0.749 37 H 0.022 0.978 38 H 0.019 0.981 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.397 0.603 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.161 0.839 47 H 0.143 0.857 48 H 0.104 0.896 49 H 0.095 0.905 50 H 0.100 0.900 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.433 8.218 25.249 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.033 3.967 5 N -0.331 5.331 6 C -0.348 4.348 7 H 0.095 0.905 8 C -0.209 4.209 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.014 3.986 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.155 4.155 18 C -0.004 4.004 19 N -0.375 5.375 20 C 0.345 3.655 21 O -0.399 6.399 22 C -0.187 4.187 23 C -0.067 4.067 24 C -0.207 4.207 25 C -0.031 4.031 26 N -0.196 5.196 27 C 0.081 3.919 28 C -0.133 4.133 29 C -0.205 4.205 30 C -0.189 4.189 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.029 0.971 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.232 0.768 44 H 0.157 0.843 45 H 0.160 0.840 46 H 0.178 0.822 47 H 0.161 0.839 48 H 0.123 0.877 49 H 0.113 0.887 50 H 0.119 0.881 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.968 6.943 25.843 26.923 hybrid contribution 0.359 0.821 -1.530 1.773 sum -2.608 7.763 24.312 25.654 Atomic orbital electron populations 1.21636 0.95767 1.01357 1.00338 1.22632 0.94363 0.99329 0.97101 0.91412 1.21976 0.84096 0.95849 0.94735 1.44513 1.10533 1.78923 0.99177 1.19139 0.91074 1.37351 0.87237 0.90505 1.24788 0.97292 1.02148 0.96625 1.69817 1.22380 1.54084 1.10884 0.86008 0.81177 0.77598 0.80814 1.20538 1.21770 1.21785 1.21367 0.93670 0.97243 0.86365 1.22136 0.98162 0.97654 0.93225 0.90879 1.21791 1.01201 0.98612 0.93869 1.21550 1.02383 0.93322 0.83191 1.45995 1.68093 1.13029 1.10348 1.17972 0.77509 0.87364 0.82620 1.90756 1.49507 1.15614 1.84017 1.20773 1.07889 0.94438 0.95597 1.21794 0.93142 0.92392 0.99361 1.22101 1.03317 1.01756 0.93551 1.22994 0.91973 0.90441 0.97736 1.67517 1.14907 1.06048 1.31103 1.20574 0.89397 0.95053 0.86845 1.21261 1.01465 0.89449 1.01137 1.23011 1.03002 1.02356 0.92151 1.22858 0.91116 1.02686 1.02215 0.93867 0.92890 0.92996 0.87765 0.97051 0.93852 0.96039 0.96263 0.91212 0.91609 0.91242 0.90681 0.76837 0.84252 0.84008 0.82164 0.83928 0.87726 0.88674 0.88129 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.31 37.16 0.35 -1.64 16 2 C -0.11 -2.06 3.09 -88.47 -0.27 -2.33 16 3 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 4 C 0.16 3.80 5.36 -2.53 -0.01 3.79 16 5 N -0.61 -15.59 3.39 -170.07 -0.58 -16.17 16 6 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 9 N -0.92 -26.99 10.09 55.49 0.56 -26.43 16 10 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.14 2.88 6.10 -3.06 -0.02 2.86 16 15 C -0.09 -1.51 2.42 -88.79 -0.21 -1.72 16 16 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 17 C -0.12 -1.43 4.73 -26.73 -0.13 -1.55 16 18 C 0.12 1.45 5.54 -4.04 -0.02 1.43 16 19 N -0.72 -7.52 5.51 -61.25 -0.34 -7.86 16 20 C 0.56 6.87 7.74 -12.33 -0.10 6.77 16 21 O -0.52 -7.97 13.42 5.32 0.07 -7.90 16 22 C -0.18 -1.92 5.89 -104.82 -0.62 -2.53 16 23 C -0.04 -0.30 9.63 -38.87 -0.37 -0.68 16 24 C -0.19 -1.16 10.10 -39.50 -0.40 -1.56 16 25 C 0.13 0.92 11.17 -17.47 -0.20 0.73 16 26 N -0.49 -5.01 9.28 -9.15 -0.08 -5.09 16 27 C 0.22 2.49 6.50 -82.18 -0.53 1.95 16 28 C -0.11 -1.32 4.61 -91.77 -0.42 -1.74 16 29 C -0.17 -1.61 10.03 -26.70 -0.27 -1.88 16 30 C -0.15 -1.57 10.24 -26.69 -0.27 -1.85 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.10 2.83 5.87 -51.93 -0.30 2.53 16 35 H 0.01 0.30 7.98 -51.93 -0.41 -0.12 16 36 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.02 0.44 7.73 -51.93 -0.40 0.04 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.07 7.58 -51.93 -0.39 0.67 16 43 H 0.40 2.97 6.61 -40.82 -0.27 2.70 16 44 H 0.14 0.66 6.56 -52.48 -0.34 0.31 16 45 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 46 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.14 1.83 6.13 -51.93 -0.32 1.52 16 48 H 0.10 1.01 7.54 -51.93 -0.39 0.62 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 51 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 406.36 15.07 6.12 6.12 Total: -1.00 -33.20 406.36 -11.30 -44.51 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.28 Total: 2.35 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.75 Total: -6.77 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.44 Total: -55.55 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.07 Total: -7.90 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.20 -11.30 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103187549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.479 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds