Wall clock time and date at job start Wed Apr 1 2020 03:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.91862 * 2 1 4 4 C 1.54915 * 111.00451 * 236.10529 * 2 1 3 5 5 N 1.47419 * 104.83281 * 204.91733 * 4 2 1 6 6 C 1.36940 * 125.64828 * 204.09486 * 5 4 2 7 7 H 1.07997 * 120.00255 * 180.02562 * 6 5 4 8 8 C 1.38817 * 119.99946 * 0.03458 * 6 5 4 9 9 N 1.31623 * 119.99649 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99737 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47556 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46977 * 120.00187 * 10 8 6 13 13 H 1.48507 * 109.46501 * 239.99576 * 10 8 6 14 14 C 1.47020 * 108.70475 * 24.12305 * 5 4 2 15 15 C 1.54328 * 107.27110 * 358.94528 * 14 5 4 16 16 H 1.08997 * 110.71691 * 96.17117 * 15 14 5 17 17 C 1.52999 * 110.71727 * 219.26384 * 15 14 5 18 18 C 1.53001 * 109.47545 * 291.15489 * 17 15 14 19 19 N 1.46498 * 109.46932 * 180.02562 * 18 17 15 20 20 C 1.34779 * 119.99423 * 180.02562 * 19 18 17 21 21 O 1.21552 * 120.00383 * 359.97438 * 20 19 18 22 22 C 1.47847 * 120.00061 * 180.02562 * 20 19 18 23 23 C 1.40022 * 120.55297 * 354.08216 * 22 20 19 24 24 C 1.38357 * 118.28602 * 180.02562 * 23 22 20 25 25 C 1.38350 * 119.30254 * 359.97438 * 24 23 22 26 26 N 1.31929 * 121.08027 * 0.02742 * 25 24 23 27 27 C 1.31693 * 121.87823 * 359.65714 * 26 25 24 28 28 C 1.50700 * 119.71622 * 180.31766 * 27 26 25 29 29 C 1.52995 * 117.49971 * 358.67221 * 28 27 26 30 30 C 1.53004 * 117.49643 * 290.01355 * 28 27 26 31 31 H 1.09002 * 109.46960 * 296.09221 * 1 2 3 32 32 H 1.08997 * 109.46782 * 56.09458 * 1 2 3 33 33 H 1.08997 * 109.46678 * 176.09290 * 1 2 3 34 34 H 1.08994 * 110.36769 * 86.07078 * 4 2 1 35 35 H 1.09005 * 110.36373 * 323.75299 * 4 2 1 36 36 H 0.96997 * 119.99305 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.88663 * 239.52343 * 14 5 4 38 38 H 1.09000 * 110.01098 * 118.43546 * 14 5 4 39 39 H 1.09006 * 109.47429 * 51.16166 * 17 15 14 40 40 H 1.09006 * 109.46724 * 171.15318 * 17 15 14 41 41 H 1.08997 * 109.47056 * 300.00243 * 18 17 15 42 42 H 1.09005 * 109.46509 * 60.00217 * 18 17 15 43 43 H 0.96996 * 120.00471 * 359.97438 * 19 18 17 44 44 H 1.08003 * 120.86049 * 0.02703 * 23 22 20 45 45 H 1.08000 * 120.34900 * 180.02562 * 24 23 22 46 46 H 1.07997 * 119.45945 * 179.97438 * 25 24 23 47 47 H 1.08998 * 115.54847 * 144.35188 * 28 27 26 48 48 H 1.09002 * 117.50104 * 0.02562 * 29 28 27 49 49 H 1.09000 * 117.49946 * 145.02355 * 29 28 27 50 50 H 1.08995 * 117.50312 * 214.98543 * 30 28 27 51 51 H 1.09001 * 117.49701 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4640 -1.5665 -1.6075 7 1 5.4125 -1.8768 -1.1945 8 6 4.2961 -1.4954 -2.9836 9 7 3.1404 -1.1166 -3.4868 10 14 5.7104 -1.9374 -4.1211 11 1 6.8928 -2.3279 -3.3122 12 1 5.3093 -3.0713 -4.9919 13 1 6.0533 -0.7634 -4.9635 14 6 3.4675 -1.2742 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4469 -1.6633 1.4208 17 6 2.2348 0.0838 2.4364 18 6 2.7263 -0.7566 3.6167 19 7 2.8680 0.0974 4.7986 20 6 3.2914 -0.4304 5.9643 21 8 3.5553 -1.6148 6.0350 22 6 3.4340 0.4312 7.1573 23 6 3.2519 1.8162 7.0609 24 6 3.3971 2.5778 8.2068 25 6 3.7139 1.9527 9.3997 26 7 3.8796 0.6453 9.4605 27 6 3.7461 -0.1228 8.3991 28 6 3.9394 -1.6120 8.5256 29 6 4.3182 -2.1608 9.9025 30 6 5.3595 -2.1208 8.7813 31 1 -0.3633 0.4520 0.9230 32 1 -0.3633 0.5733 -0.8529 33 1 -0.3632 -1.0253 -0.0700 34 1 2.1559 -0.1718 -2.0837 35 1 1.4519 -1.6703 -1.4026 36 1 3.0230 -1.0673 -4.4484 37 1 4.2427 -0.5998 1.0598 38 1 3.6663 -2.2884 1.0420 39 1 2.9555 0.8748 2.2285 40 1 1.2699 0.5270 2.6827 41 1 2.0057 -1.5475 3.8246 42 1 3.6912 -1.1997 3.3703 43 1 2.6578 1.0426 4.7421 44 1 3.0046 2.2781 6.1165 45 1 3.2638 3.6489 8.1707 46 1 3.8282 2.5448 10.2956 47 1 3.2900 -2.2250 7.9006 48 1 4.4273 -1.4448 10.7172 49 1 3.9184 -3.1351 10.1834 50 1 5.6443 -3.0687 8.3249 51 1 6.1540 -1.3784 8.8576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103187549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:29 Heat of formation + Delta-G solvation = 24.129856 kcal Electronic energy + Delta-G solvation = -29307.154570 eV Core-core repulsion = 25399.810191 eV Total energy + Delta-G solvation = -3907.344379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.86469 -40.22378 -39.60563 -37.85543 -36.45926 -35.06337 -33.80638 -32.54064 -32.39003 -31.93932 -28.55271 -27.46765 -26.08774 -25.44818 -25.05954 -23.49999 -23.20704 -22.01533 -21.67594 -21.33669 -20.66402 -18.87755 -18.76162 -17.99134 -17.40077 -17.13713 -16.68759 -16.43831 -16.14285 -15.93275 -15.66993 -15.43220 -15.29245 -14.97619 -14.66774 -14.48097 -14.26335 -13.96118 -13.68878 -13.55174 -13.48556 -13.36595 -12.89601 -12.85125 -12.77840 -12.71936 -12.40655 -12.39838 -12.18647 -11.93772 -11.79849 -11.72777 -11.49133 -11.39518 -11.26227 -11.04087 -10.93545 -10.92433 -10.75326 -10.35195 -10.17881 -9.80897 -8.87690 -7.78032 -5.22454 -0.37062 0.17722 1.44345 1.45240 1.55761 1.82740 2.05808 2.48190 2.65675 3.06857 3.18499 3.30453 3.54726 3.67811 3.72566 3.74554 3.84573 3.92394 4.01159 4.07975 4.12154 4.18269 4.24120 4.27755 4.35475 4.50044 4.52554 4.63458 4.67653 4.73969 4.75358 4.80225 4.83980 4.96586 5.01967 5.02225 5.03927 5.05001 5.12588 5.18596 5.22224 5.28549 5.31242 5.40954 5.44404 5.46166 5.55804 5.62673 5.77272 5.85969 6.32499 6.48040 6.90479 7.11506 7.16678 7.79422 8.43122 9.23304 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.002047 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.134749 B =13673.396591 C =14487.755857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.073 0.927 4 C 0.158 3.842 5 N -0.630 5.630 6 C -0.239 4.239 7 H 0.076 0.924 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.979 3.021 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.288 1.288 14 C 0.134 3.866 15 C -0.078 4.078 16 H 0.077 0.923 17 C -0.100 4.100 18 C 0.126 3.874 19 N -0.709 5.709 20 C 0.555 3.445 21 O -0.562 6.562 22 C -0.202 4.202 23 C -0.038 4.038 24 C -0.175 4.175 25 C 0.120 3.880 26 N -0.509 5.509 27 C 0.198 3.802 28 C -0.129 4.129 29 C -0.153 4.153 30 C -0.156 4.156 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.069 0.931 35 H -0.018 1.018 36 H 0.247 0.753 37 H 0.026 0.974 38 H 0.009 0.991 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.414 0.586 44 H 0.170 0.830 45 H 0.181 0.819 46 H 0.192 0.808 47 H 0.122 0.878 48 H 0.106 0.894 49 H 0.106 0.894 50 H 0.099 0.901 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 11.019 27.202 29.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.119 4.119 3 H 0.091 0.909 4 C 0.034 3.966 5 N -0.356 5.356 6 C -0.368 4.368 7 H 0.093 0.907 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.807 3.193 11 H -0.194 1.194 12 H -0.219 1.219 13 H -0.215 1.215 14 C 0.009 3.991 15 C -0.098 4.098 16 H 0.095 0.905 17 C -0.138 4.138 18 C 0.002 3.998 19 N -0.361 5.361 20 C 0.343 3.657 21 O -0.442 6.442 22 C -0.208 4.208 23 C -0.064 4.064 24 C -0.194 4.194 25 C -0.037 4.037 26 N -0.218 5.218 27 C 0.060 3.940 28 C -0.148 4.148 29 C -0.190 4.190 30 C -0.194 4.194 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.087 0.913 35 H -0.001 1.001 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.027 0.973 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.187 0.813 45 H 0.199 0.801 46 H 0.209 0.791 47 H 0.140 0.860 48 H 0.124 0.876 49 H 0.125 0.875 50 H 0.117 0.883 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.600 9.777 27.822 29.708 hybrid contribution 0.571 -0.019 -2.093 2.169 sum -3.029 9.759 25.729 27.684 Atomic orbital electron populations 1.21600 0.92966 1.01484 1.02398 1.22468 0.96519 0.98448 0.94493 0.90872 1.21805 0.83548 0.94812 0.96477 1.44870 1.10557 1.78927 1.01237 1.19474 0.91908 1.37236 0.88171 0.90651 1.25628 0.99806 1.02578 0.98056 1.70078 1.24046 1.54925 1.10712 0.84999 0.78603 0.77044 0.78637 1.19385 1.21922 1.21472 1.21572 0.96758 0.96953 0.83862 1.22040 0.95090 0.98305 0.94339 0.90499 1.21638 1.03259 0.97542 0.91367 1.21307 1.00931 0.93578 0.83977 1.45769 1.67474 1.13693 1.09197 1.18346 0.76794 0.87135 0.83439 1.90740 1.51298 1.17469 1.84719 1.20694 1.09906 0.95751 0.94404 1.22173 0.91967 0.90944 1.01267 1.22535 1.01036 1.03491 0.92316 1.23655 0.90672 0.89662 0.99661 1.67505 1.15841 1.07542 1.30890 1.20554 0.90796 0.94917 0.87742 1.21179 1.01414 0.90304 1.01873 1.23025 1.01800 1.02724 0.91423 1.22849 0.90987 1.02544 1.02974 0.89956 0.92927 0.93617 0.91327 1.00050 0.94348 0.95637 0.97270 0.90605 0.88170 0.91754 0.93205 0.74786 0.81311 0.80136 0.79088 0.86039 0.87588 0.87528 0.88259 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.31 71.98 0.67 -2.80 16 2 C -0.10 -3.45 3.09 -9.40 -0.03 -3.48 16 3 H 0.07 2.48 8.05 -2.39 -0.02 2.46 16 4 C 0.16 7.84 5.36 86.86 0.47 8.31 16 5 N -0.63 -33.34 3.39 -691.98 -2.35 -35.69 16 6 C -0.24 -13.82 10.27 84.03 0.86 -12.96 16 7 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 8 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 9 N -0.95 -57.34 10.09 21.65 0.22 -57.12 16 10 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 14 C 0.13 5.57 6.10 86.73 0.53 6.10 16 15 C -0.08 -2.44 2.42 -9.61 -0.02 -2.47 16 16 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 17 C -0.10 -2.14 4.73 30.59 0.14 -1.99 16 18 C 0.13 2.90 5.54 86.38 0.48 3.38 16 19 N -0.71 -13.33 5.51 -465.97 -2.57 -15.90 16 20 C 0.56 13.40 7.74 86.79 0.67 14.07 16 21 O -0.56 -17.87 13.42 -3.88 -0.05 -17.92 16 22 C -0.20 -4.03 5.89 -19.99 -0.12 -4.15 16 23 C -0.04 -0.43 9.63 22.73 0.22 -0.21 16 24 C -0.17 -1.42 10.10 22.32 0.23 -1.19 16 25 C 0.12 1.40 11.17 84.70 0.95 2.35 16 26 N -0.51 -9.80 9.28 -182.85 -1.70 -11.50 16 27 C 0.20 4.43 6.50 42.89 0.28 4.71 16 28 C -0.13 -3.10 4.61 -11.54 -0.05 -3.15 16 29 C -0.15 -2.97 10.03 30.62 0.31 -2.66 16 30 C -0.16 -3.40 10.24 30.62 0.31 -3.09 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.31 8.07 -2.39 -0.02 1.29 16 34 H 0.07 3.89 5.87 -2.39 -0.01 3.88 16 35 H -0.02 -1.00 7.98 -2.38 -0.02 -1.02 16 36 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 37 H 0.03 1.04 7.73 -2.39 -0.02 1.03 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.08 1.60 8.00 -2.38 -0.02 1.58 16 40 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 42 H 0.05 1.42 7.58 -2.38 -0.02 1.40 16 43 H 0.41 4.69 6.61 -92.71 -0.61 4.08 16 44 H 0.17 0.80 6.56 -2.91 -0.02 0.78 16 45 H 0.18 0.08 8.06 -2.91 -0.02 0.05 16 46 H 0.19 0.86 8.06 -2.91 -0.02 0.84 16 47 H 0.12 3.39 6.13 -2.39 -0.01 3.38 16 48 H 0.11 2.02 7.54 -2.39 -0.02 2.00 16 49 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -77.75 406.36 2.25 -75.50 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.31 Total: 16.68 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 6.36 Total: -2.74 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -6.39 Total: -120.20 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.05 Total: -17.92 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -77.75 2.25 -75.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103187549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.630 kcal (2) G-P(sol) polarization free energy of solvation -77.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds