Wall clock time and date at job start Wed Apr 1 2020 03:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.34651 * 2 1 4 4 C 1.53995 * 110.30841 * 237.85983 * 2 1 3 5 5 N 1.47901 * 107.05282 * 242.30363 * 4 2 1 6 6 C 1.46901 * 110.99760 * 214.15748 * 5 4 2 7 7 C 1.50707 * 109.46896 * 287.39898 * 6 5 4 8 8 O 1.21291 * 119.99999 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99617 * 180.02562 * 7 6 5 10 10 C 1.37102 * 119.99377 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00678 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99559 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00166 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99980 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46963 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47443 * 120.00035 * 14 12 10 17 17 H 1.48502 * 109.47212 * 240.00145 * 14 12 10 18 18 C 1.48528 * 105.82131 * 334.66817 * 5 4 2 19 19 C 1.54588 * 110.31076 * 122.13650 * 2 1 3 20 20 H 1.08994 * 110.87820 * 22.45013 * 19 2 1 21 21 C 1.53000 * 110.72739 * 259.23224 * 19 2 1 22 22 C 1.53003 * 109.46990 * 180.02562 * 21 19 2 23 23 N 1.46499 * 109.46708 * 180.02562 * 22 21 19 24 24 C 1.34784 * 119.99893 * 180.02562 * 23 22 21 25 25 O 1.21283 * 119.99649 * 0.02562 * 24 23 22 26 26 C 1.50697 * 119.99774 * 179.72962 * 24 23 22 27 27 C 1.53003 * 109.46624 * 180.02562 * 26 24 23 28 28 C 1.53003 * 109.46813 * 179.97438 * 27 26 24 29 29 F 1.39902 * 109.47253 * 179.97438 * 28 27 26 30 30 H 1.08996 * 109.47472 * 297.85620 * 1 2 3 31 31 H 1.09002 * 109.47847 * 57.86337 * 1 2 3 32 32 H 1.09007 * 109.46598 * 177.85869 * 1 2 3 33 33 H 1.09000 * 109.91685 * 122.95141 * 4 2 1 34 34 H 1.09003 * 110.08322 * 1.74888 * 4 2 1 35 35 H 1.08994 * 109.47357 * 47.39114 * 6 5 4 36 36 H 1.08994 * 109.47436 * 167.39959 * 6 5 4 37 37 H 0.96996 * 120.00239 * 359.97438 * 9 7 6 38 38 H 0.97001 * 119.99852 * 179.97438 * 13 12 10 39 39 H 1.08993 * 110.67013 * 280.77183 * 18 5 4 40 40 H 1.09005 * 110.66442 * 157.64288 * 18 5 4 41 41 H 1.09000 * 109.46641 * 60.04623 * 21 19 2 42 42 H 1.08994 * 109.47288 * 300.04924 * 21 19 2 43 43 H 1.08998 * 109.46692 * 60.00542 * 22 21 19 44 44 H 1.08994 * 109.47584 * 300.00406 * 22 21 19 45 45 H 0.97005 * 120.00261 * 0.02562 * 23 22 21 46 46 H 1.09001 * 109.46809 * 299.99238 * 26 24 23 47 47 H 1.08993 * 109.47525 * 59.99679 * 26 24 23 48 48 H 1.09001 * 109.46782 * 299.99104 * 27 26 24 49 49 H 1.08993 * 109.47555 * 59.99547 * 27 26 24 50 50 H 1.08998 * 109.47446 * 299.99771 * 28 27 26 51 51 H 1.09001 * 109.47095 * 59.99865 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0221 0.0000 4 6 2.0645 -0.7683 -1.2229 5 7 2.8314 -1.9235 -0.7081 6 6 3.9752 -2.2260 -1.5788 7 6 3.4810 -2.8475 -2.8597 8 8 2.2928 -3.0217 -3.0302 9 7 4.3594 -3.2107 -3.8152 10 6 3.9097 -3.7765 -4.9802 11 1 2.8517 -3.9309 -5.1325 12 6 4.8152 -4.1505 -5.9656 13 7 6.1026 -3.9622 -5.7806 14 14 4.2026 -4.9208 -7.5533 15 1 2.7217 -5.0238 -7.5143 16 1 4.6104 -4.0748 -8.7036 17 1 4.7888 -6.2769 -7.7039 18 6 3.2856 -1.5346 0.6515 19 6 2.0666 -0.7712 1.2276 20 1 1.3188 -1.4681 1.6059 21 6 2.5053 0.1984 2.3269 22 6 3.0310 -0.5937 3.5257 23 7 3.4504 0.3347 4.5784 24 6 3.9511 -0.1407 5.7360 25 8 4.0547 -1.3371 5.9058 26 6 4.3882 0.8146 6.8165 27 6 4.9139 0.0224 8.0153 28 6 5.3583 0.9922 9.1121 29 9 5.8384 0.2680 10.2085 30 1 -0.3634 0.4801 0.9085 31 1 -0.3635 0.5466 -0.8702 32 1 -0.3633 -1.0270 -0.0384 33 1 2.7161 -0.1225 -1.8114 34 1 1.2347 -1.1175 -1.8375 35 1 4.5128 -1.3054 -1.8056 36 1 4.6438 -2.9217 -1.0718 37 1 5.3096 -3.0717 -3.6787 38 1 6.7347 -4.2236 -6.4684 39 1 4.1564 -0.8816 0.5941 40 1 3.5048 -2.4180 1.2512 41 1 1.6543 0.8047 2.6373 42 1 3.2938 0.8472 1.9457 43 1 3.8818 -1.2002 3.2154 44 1 2.2422 -1.2423 3.9068 45 1 3.3679 1.2916 4.4424 46 1 5.1787 1.4597 6.4330 47 1 3.5401 1.4245 7.1272 48 1 4.1237 -0.6230 8.3989 49 1 5.7621 -0.5873 7.7043 50 1 6.1485 1.6374 8.7283 51 1 4.5102 1.6022 9.4232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103324230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:41 Heat of formation + Delta-G solvation = -145.180003 kcal Electronic energy + Delta-G solvation = -29217.043566 eV Core-core repulsion = 24871.588135 eV Total energy + Delta-G solvation = -4345.455431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.03739 -40.19223 -39.48714 -37.82042 -35.80774 -34.47845 -34.01376 -33.32823 -31.83627 -31.16751 -28.77778 -27.73433 -26.59250 -25.39273 -24.30574 -22.80937 -22.29215 -20.94388 -20.56322 -19.99493 -18.98684 -17.81040 -17.56413 -17.04259 -16.52759 -16.16327 -15.94263 -15.79820 -15.70383 -15.20872 -15.14276 -14.79305 -14.47636 -14.00859 -13.91928 -13.82040 -13.66140 -13.50104 -13.09964 -13.06881 -12.61206 -12.46569 -12.26177 -12.11513 -12.00998 -11.87747 -11.61013 -11.57720 -11.53765 -11.37793 -11.16474 -11.10917 -10.86458 -10.70316 -10.52271 -10.48805 -10.32509 -10.19791 -10.18031 -9.47636 -9.43583 -8.45778 -7.94864 -7.88806 -6.38904 -3.79449 2.26078 2.73169 3.17987 3.28226 3.35566 3.94638 4.02102 4.07739 4.16648 4.22963 4.26740 4.36062 4.50254 4.53654 4.66782 4.68397 4.71538 4.88976 4.93194 4.95010 5.17176 5.18323 5.21407 5.27358 5.33753 5.38194 5.42151 5.45118 5.55316 5.62707 5.69988 5.72581 5.76647 5.79109 5.84255 5.91663 6.01873 6.06336 6.12174 6.13408 6.31925 6.32984 6.51264 7.07898 7.22623 7.27796 7.58018 7.83964 8.09839 8.65646 9.21659 9.58355 10.10683 10.79129 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.001568 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.499363 B =17851.457063 C =19098.166094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.071 0.929 4 C 0.047 3.953 5 N -0.491 5.491 6 C 0.037 3.963 7 C 0.446 3.554 8 O -0.576 6.576 9 N -0.568 5.568 10 C -0.297 4.297 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.035 3.965 19 C -0.083 4.083 20 H 0.089 0.911 21 C -0.120 4.120 22 C 0.116 3.884 23 N -0.732 5.732 24 C 0.510 3.490 25 O -0.536 6.536 26 C -0.139 4.139 27 C -0.140 4.140 28 C 0.062 3.938 29 F -0.218 7.218 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.391 0.609 38 H 0.270 0.730 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.400 0.600 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 16.730 24.819 30.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.080 4.080 5 N -0.214 5.214 6 C -0.095 4.095 7 C 0.231 3.769 8 O -0.459 6.459 9 N -0.205 5.205 10 C -0.426 4.426 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.545 5.545 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.093 4.093 19 C -0.102 4.102 20 H 0.107 0.893 21 C -0.158 4.158 22 C -0.007 4.007 23 N -0.384 5.384 24 C 0.296 3.704 25 O -0.412 6.412 26 C -0.179 4.179 27 C -0.179 4.179 28 C 0.007 3.993 29 F -0.199 7.199 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.224 0.776 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.234 0.766 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.093 0.907 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.785 15.183 24.706 29.244 hybrid contribution 1.034 0.884 -0.982 1.678 sum -2.751 16.066 23.724 28.784 Atomic orbital electron populations 1.21810 0.94387 1.02480 1.01067 1.22060 0.96500 0.98610 0.94453 0.91073 1.22962 0.99037 0.90258 0.95773 1.64447 1.19942 1.36234 1.00797 1.22077 0.92752 1.00097 0.94597 1.19739 0.87173 0.84853 0.85129 1.90508 1.16138 1.59086 1.80211 1.41871 1.08683 1.54576 1.15341 1.19746 0.94880 1.35654 0.92355 0.87906 1.25248 0.94951 0.98025 0.99792 1.69622 1.01045 1.48309 1.35517 0.85812 0.79102 0.78490 0.81010 1.19235 1.20830 1.20776 1.23363 0.95796 0.98814 0.91302 1.22071 0.97794 0.96513 0.93871 0.89311 1.21813 1.01187 0.98293 0.94501 1.21462 1.00299 0.92266 0.86691 1.46067 1.65344 1.10559 1.16427 1.20597 0.77217 0.89642 0.82974 1.90755 1.54081 1.16431 1.79976 1.21548 1.03043 0.98571 0.94758 1.21924 1.03507 0.98459 0.93963 1.21998 0.99818 0.93546 0.83950 1.92783 1.90205 1.80391 1.56494 0.93118 0.92647 0.91863 0.94427 0.88930 0.93355 0.89424 0.77569 0.92000 0.94008 0.90085 0.91053 0.91224 0.91012 0.91218 0.76606 0.88439 0.88498 0.89870 0.89814 0.90694 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.89 37.16 0.33 -1.10 16 2 C -0.10 -1.07 3.17 -89.27 -0.28 -1.35 16 3 H 0.07 0.68 7.85 -51.92 -0.41 0.28 16 4 C 0.05 0.74 5.52 -2.75 -0.02 0.72 16 5 N -0.49 -8.18 4.91 -231.89 -1.14 -9.32 16 6 C 0.04 0.67 5.27 -4.97 -0.03 0.64 16 7 C 0.45 10.70 7.61 -10.98 -0.08 10.62 16 8 O -0.58 -15.78 14.87 5.55 0.08 -15.69 16 9 N -0.57 -14.59 5.29 -10.96 -0.06 -14.65 16 10 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 14 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.04 0.43 5.14 -1.90 -0.01 0.43 16 19 C -0.08 -0.82 2.63 -88.76 -0.23 -1.06 16 20 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 21 C -0.12 -0.82 4.71 -26.73 -0.13 -0.94 16 22 C 0.12 0.92 5.52 -4.04 -0.02 0.89 16 23 N -0.73 -4.53 5.56 -60.30 -0.33 -4.87 16 24 C 0.51 4.11 7.83 -10.98 -0.09 4.02 16 25 O -0.54 -6.94 15.98 5.56 0.09 -6.85 16 26 C -0.14 -0.55 5.70 -27.88 -0.16 -0.71 16 27 C -0.14 -0.82 4.96 -26.73 -0.13 -0.95 16 28 C 0.06 0.27 7.55 37.16 0.28 0.56 16 29 F -0.22 -1.81 17.36 2.25 0.04 -1.77 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.04 0.59 7.52 -51.93 -0.39 0.20 16 34 H 0.09 1.70 7.07 -51.93 -0.37 1.33 16 35 H 0.05 0.80 7.73 -51.93 -0.40 0.40 16 36 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 37 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.04 0.48 7.89 -51.93 -0.41 0.07 16 40 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.45 8.10 -51.93 -0.42 0.02 16 43 H 0.07 0.68 7.43 -51.93 -0.39 0.30 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.40 1.23 8.47 -40.82 -0.35 0.88 16 46 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 48 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 49 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 50 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 51 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 LS Contribution 416.49 15.07 6.28 6.28 Total: -1.00 -35.30 416.49 -9.00 -44.30 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -8.85 Total: 6.72 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -0.81 Total: 3.73 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.81 Total: -52.93 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.17 Total: -22.54 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.30 -9.00 -44.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103324230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.880 kcal (2) G-P(sol) polarization free energy of solvation -35.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds