Wall clock time and date at job start Wed Apr 1 2020 03:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.63858 * 2 1 4 4 C 1.54322 * 110.72172 * 236.66022 * 2 1 3 5 5 N 1.47027 * 107.27125 * 219.44708 * 4 2 1 6 6 C 1.36936 * 125.64769 * 178.97729 * 5 4 2 7 7 H 1.07992 * 119.99633 * 174.78702 * 6 5 4 8 8 C 1.38810 * 119.99862 * 354.79063 * 6 5 4 9 9 N 1.31615 * 120.00317 * 7.05497 * 8 6 5 10 10 Si 1.86802 * 119.99762 * 187.05596 * 8 6 5 11 11 H 1.48496 * 109.47026 * 94.98786 * 10 8 6 12 12 H 1.48508 * 109.47123 * 214.98419 * 10 8 6 13 13 H 1.48496 * 109.47075 * 334.98282 * 10 8 6 14 14 C 1.47463 * 108.71975 * 358.97182 * 5 4 2 15 15 C 1.54915 * 104.81474 * 24.07689 * 14 5 4 16 16 H 1.09001 * 111.00604 * 81.12659 * 15 14 5 17 17 C 1.53001 * 111.00137 * 204.94755 * 15 14 5 18 18 C 1.53000 * 109.47035 * 290.41054 * 17 15 14 19 19 N 1.46500 * 109.46655 * 180.02562 * 18 17 15 20 20 C 1.34782 * 119.99388 * 180.02562 * 19 18 17 21 21 O 1.21279 * 120.00191 * 359.97438 * 20 19 18 22 22 C 1.50701 * 119.99637 * 179.97438 * 20 19 18 23 23 H 1.09002 * 110.71762 * 61.92354 * 22 20 19 24 24 C 1.54413 * 110.81027 * 185.51133 * 22 20 19 25 25 C 1.51057 * 105.15191 * 144.38389 * 24 22 20 26 26 C 1.38624 * 131.52249 * 162.95021 * 25 24 22 27 27 C 1.38210 * 119.09678 * 180.02562 * 26 25 24 28 28 N 1.31885 * 120.70983 * 0.24669 * 27 26 25 29 29 C 1.31835 * 121.78902 * 359.45495 * 28 27 26 30 30 C 1.38334 * 120.75330 * 0.56368 * 29 28 27 31 31 C 1.51178 * 131.26750 * 179.73205 * 30 29 28 32 32 H 1.08996 * 109.47515 * 296.86524 * 1 2 3 33 33 H 1.09001 * 109.46736 * 56.86551 * 1 2 3 34 34 H 1.09004 * 109.47119 * 176.85583 * 1 2 3 35 35 H 1.08999 * 109.88219 * 338.86075 * 4 2 1 36 36 H 1.08995 * 109.88160 * 100.02649 * 4 2 1 37 37 H 0.96999 * 120.00354 * 180.02562 * 9 8 6 38 38 H 1.08996 * 110.35331 * 265.25224 * 14 5 4 39 39 H 1.09000 * 110.40294 * 142.91643 * 14 5 4 40 40 H 1.09000 * 109.46254 * 170.41402 * 17 15 14 41 41 H 1.08992 * 109.47199 * 50.41642 * 17 15 14 42 42 H 1.08998 * 109.46880 * 60.00698 * 18 17 15 43 43 H 1.08993 * 109.47124 * 300.00550 * 18 17 15 44 44 H 0.96996 * 120.00509 * 359.97438 * 19 18 17 45 45 H 1.08999 * 110.30697 * 25.46289 * 24 22 20 46 46 H 1.09002 * 110.31181 * 263.30100 * 24 22 20 47 47 H 1.08003 * 120.45215 * 0.02562 * 26 25 24 48 48 H 1.07995 * 119.64392 * 179.97438 * 27 26 25 49 49 H 1.07997 * 119.62549 * 180.26778 * 29 28 27 50 50 H 1.08998 * 110.30062 * 316.00034 * 31 30 29 51 51 H 1.09001 * 110.29757 * 78.04097 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7933 -1.2058 5 7 3.2446 -1.5521 -0.7362 6 6 4.0044 -2.3996 -1.4975 7 1 4.8949 -2.8471 -1.0816 8 6 3.6299 -2.6834 -2.8036 9 7 2.6272 -2.0345 -3.3566 10 14 4.5491 -3.9865 -3.7766 11 1 3.8345 -5.2835 -3.6649 12 1 4.6192 -3.5813 -5.2035 13 1 5.9241 -4.1306 -3.2348 14 6 3.4632 -1.2494 0.6904 15 6 2.0789 -0.7934 1.2153 16 1 1.4447 -1.6507 1.4408 17 6 2.2277 0.1122 2.4395 18 6 2.7270 -0.7134 3.6269 19 7 2.8689 0.1536 4.7992 20 6 3.2987 -0.3598 5.9689 21 8 3.5674 -1.5396 6.0511 22 6 3.4453 0.5322 7.1747 23 1 2.4829 0.9581 7.4586 24 6 4.0779 -0.2386 8.3537 25 6 4.9518 0.7701 9.0613 26 6 5.5147 0.7698 10.3281 27 6 6.2861 1.8473 10.7210 28 7 6.4832 2.8666 9.9078 29 6 5.9678 2.8971 8.6948 30 6 5.1846 1.8547 8.2326 31 6 4.4817 1.6458 6.9106 32 1 -0.3634 0.4644 0.9167 33 1 -0.3633 0.5617 -0.8606 34 1 -0.3633 -1.0262 -0.0564 35 1 1.3130 -1.4786 -1.5749 36 1 2.3741 -0.1059 -1.9975 37 1 2.3653 -2.2330 -4.2692 38 1 4.1935 -0.4478 0.8002 39 1 3.7951 -2.1415 1.2216 40 1 1.2616 0.5536 2.6843 41 1 2.9440 0.9041 2.2207 42 1 3.6930 -1.1548 3.3819 43 1 2.0107 -1.5053 3.8456 44 1 2.6543 1.0973 4.7334 45 1 4.6809 -1.0677 7.9834 46 1 3.3022 -0.6048 9.0262 47 1 5.3527 -0.0610 10.9990 48 1 6.7285 1.8565 11.7062 49 1 6.1553 3.7477 8.0563 50 1 3.9807 2.5625 6.5996 51 1 5.1943 1.3282 6.1494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103437161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:53 Heat of formation + Delta-G solvation = 5.943468 kcal Electronic energy + Delta-G solvation = -28973.349386 eV Core-core repulsion = 25065.216386 eV Total energy + Delta-G solvation = -3908.133000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.33042 -39.82616 -38.21583 -36.69652 -35.32684 -33.27291 -32.36600 -31.39845 -30.69260 -30.28711 -28.20359 -26.94499 -25.71606 -24.76390 -23.76051 -22.28501 -22.13810 -21.84837 -20.37450 -19.68660 -19.22978 -17.67221 -17.12532 -16.84285 -16.53137 -16.12050 -15.68005 -15.38573 -15.06104 -14.85645 -14.39068 -14.14594 -14.04137 -13.86020 -13.61331 -13.40789 -13.27565 -13.06510 -12.67579 -12.54073 -12.35006 -12.01963 -11.95555 -11.77799 -11.75833 -11.66204 -11.39285 -11.23624 -11.07277 -10.78640 -10.75115 -10.17868 -10.03431 -9.90729 -9.87666 -9.84527 -9.77142 -9.63638 -9.50364 -9.29683 -9.18943 -8.55580 -6.79436 -5.70166 -3.01908 0.70988 0.86058 2.39090 2.92577 3.38704 3.41578 3.47078 3.48679 3.74571 3.92521 4.13941 4.40021 4.45009 4.52086 4.53950 4.64664 4.80622 4.90588 4.99835 5.04140 5.07382 5.21150 5.25499 5.28215 5.41342 5.46424 5.47816 5.50038 5.57817 5.62346 5.66470 5.68366 5.73273 5.90619 5.93540 5.97544 6.07842 6.20326 6.23270 6.29224 6.31409 6.35009 6.50777 6.63241 6.66084 6.79301 7.00923 7.29416 7.58783 7.59126 7.67627 7.86059 8.00734 8.28905 9.24826 9.85503 10.52308 11.41883 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018236 B = 0.001800 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.048842 B =15555.577593 C =16175.425312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.064 0.936 4 C 0.182 3.818 5 N -0.607 5.607 6 C -0.227 4.227 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.920 5.920 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.139 3.861 15 C -0.095 4.095 16 H 0.076 0.924 17 C -0.116 4.116 18 C 0.117 3.883 19 N -0.726 5.726 20 C 0.520 3.480 21 O -0.535 6.535 22 C -0.111 4.111 23 H 0.111 0.889 24 C -0.070 4.070 25 C -0.049 4.049 26 C -0.160 4.160 27 C 0.096 3.904 28 N -0.485 5.485 29 C 0.114 3.886 30 C -0.150 4.150 31 C -0.068 4.068 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.251 0.749 38 H 0.016 0.984 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.400 0.600 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.135 0.865 48 H 0.158 0.842 49 H 0.155 0.845 50 H 0.089 0.911 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 10.932 25.746 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.082 0.918 4 C 0.058 3.942 5 N -0.333 5.333 6 C -0.356 4.356 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.568 5.568 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.013 3.987 15 C -0.115 4.115 16 H 0.095 0.905 17 C -0.154 4.154 18 C -0.006 4.006 19 N -0.377 5.377 20 C 0.305 3.695 21 O -0.411 6.411 22 C -0.132 4.132 23 H 0.129 0.871 24 C -0.107 4.107 25 C -0.057 4.057 26 C -0.179 4.179 27 C -0.060 4.060 28 N -0.193 5.193 29 C -0.043 4.043 30 C -0.152 4.152 31 C -0.106 4.106 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.234 0.766 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.153 0.847 48 H 0.175 0.825 49 H 0.172 0.828 50 H 0.107 0.893 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.284 10.678 25.841 27.962 hybrid contribution -0.164 -0.920 -0.910 1.304 sum -0.447 9.758 24.932 26.777 Atomic orbital electron populations 1.21681 0.95584 1.01559 1.00240 1.22480 0.94940 0.98894 0.97031 0.91803 1.21215 0.89250 0.92966 0.90789 1.44484 1.32697 1.51482 1.04638 1.19068 1.04367 1.18292 0.93844 0.90495 1.24814 0.98559 0.99952 0.97143 1.69978 1.30210 1.42765 1.13837 0.86137 0.78924 0.81646 0.79333 1.21646 1.21812 1.20652 1.21623 0.93300 0.97045 0.86711 1.22331 0.98908 0.97565 0.92730 0.90544 1.21740 1.01132 0.98579 0.93947 1.21527 1.02245 0.93194 0.83670 1.46072 1.67868 1.13133 1.10587 1.20228 0.76835 0.88435 0.84003 1.90734 1.49453 1.16607 1.84356 1.22033 1.00963 0.96076 0.94121 0.87111 1.20954 0.98188 0.96891 0.94708 1.20904 0.95715 0.95523 0.93602 1.21657 0.99602 1.00614 0.96060 1.22731 0.95095 0.89036 0.99146 1.67740 1.20902 1.26648 1.04053 1.22254 0.92763 0.97048 0.92187 1.21469 1.00270 0.96178 0.97302 1.20934 0.96684 0.98381 0.94572 0.93854 0.93004 0.92761 0.93302 0.94454 0.93828 0.96616 0.94442 0.91635 0.91323 0.90869 0.91376 0.76609 0.87595 0.89528 0.84741 0.82479 0.82781 0.89283 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.16 37.16 0.34 -1.66 16 2 C -0.11 -2.01 3.02 -88.78 -0.27 -2.27 16 3 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 4 C 0.18 4.37 4.98 -3.06 -0.02 4.35 16 5 N -0.61 -15.51 3.40 -170.04 -0.58 -16.09 16 6 C -0.23 -6.41 10.26 -15.06 -0.15 -6.56 16 7 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 8 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 9 N -0.92 -27.16 10.36 55.49 0.57 -26.59 16 10 Si 0.91 22.34 29.56 -169.99 -5.02 17.31 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.14 2.82 6.04 -2.50 -0.02 2.80 16 15 C -0.10 -1.54 2.48 -88.47 -0.22 -1.76 16 16 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 17 C -0.12 -1.34 4.84 -26.73 -0.13 -1.47 16 18 C 0.12 1.36 5.55 -4.04 -0.02 1.34 16 19 N -0.73 -6.54 5.50 -60.30 -0.33 -6.88 16 20 C 0.52 5.37 7.06 -10.98 -0.08 5.30 16 21 O -0.54 -7.90 15.56 5.56 0.09 -7.81 16 22 C -0.11 -0.78 3.47 -90.30 -0.31 -1.09 16 23 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 24 C -0.07 -0.55 6.06 -26.97 -0.16 -0.72 16 25 C -0.05 -0.40 6.21 -104.22 -0.65 -1.04 16 26 C -0.16 -1.15 10.12 -39.45 -0.40 -1.55 16 27 C 0.10 0.74 11.19 -17.54 -0.20 0.54 16 28 N -0.49 -4.60 10.36 -13.23 -0.14 -4.74 16 29 C 0.11 0.94 11.19 -17.51 -0.20 0.75 16 30 C -0.15 -1.17 6.18 -104.26 -0.64 -1.82 16 31 C -0.07 -0.42 6.25 -26.91 -0.17 -0.59 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16 35 H 0.05 1.30 6.92 -51.93 -0.36 0.94 16 36 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 37 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.02 0.32 7.96 -51.93 -0.41 -0.09 16 39 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.77 8.03 -51.93 -0.42 0.35 16 42 H 0.07 1.00 7.59 -51.93 -0.39 0.60 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.40 2.40 8.47 -40.82 -0.35 2.05 16 45 H 0.11 1.03 7.07 -51.93 -0.37 0.67 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 48 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 50 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.09 0.64 7.89 -51.93 -0.41 0.23 16 LS Contribution 406.69 15.07 6.13 6.13 Total: -1.00 -34.42 406.69 -11.22 -45.64 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.55 Total: -1.17 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -3.39 Total: -5.80 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.47 Total: -54.30 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.42 -11.22 -45.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103437161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.584 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds