Wall clock time and date at job start Wed Apr 1 2020 03:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.36939 * 125.64960 * 204.07747 * 5 4 2 7 7 H 1.08002 * 120.00101 * 180.02562 * 6 5 4 8 8 C 1.38812 * 119.99929 * 0.06348 * 6 5 4 9 9 N 1.31624 * 119.99617 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00157 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47028 * 89.99730 * 10 8 6 12 12 H 1.48505 * 109.47066 * 209.99687 * 10 8 6 13 13 H 1.48498 * 109.47008 * 329.99787 * 10 8 6 14 14 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 15 15 C 1.54327 * 107.26790 * 358.93814 * 14 5 4 16 16 H 1.09001 * 110.71543 * 96.16961 * 15 14 5 17 17 C 1.52997 * 110.71488 * 219.44355 * 15 14 5 18 18 C 1.53002 * 109.47512 * 288.52170 * 17 15 14 19 19 N 1.46491 * 109.47334 * 180.02562 * 18 17 15 20 20 C 1.34783 * 119.99989 * 179.97438 * 19 18 17 21 21 O 1.21280 * 119.99769 * 0.02562 * 20 19 18 22 22 C 1.50697 * 119.99835 * 180.02562 * 20 19 18 23 23 H 1.09000 * 110.73010 * 303.40459 * 22 20 19 24 24 C 1.54372 * 110.81971 * 180.02562 * 22 20 19 25 25 C 1.51223 * 105.11812 * 268.06645 * 24 22 20 26 26 C 1.38749 * 130.69594 * 162.85458 * 25 24 22 27 27 C 1.38573 * 118.55593 * 179.97438 * 26 25 24 28 28 C 1.38228 * 118.99547 * 0.06112 * 27 26 25 29 29 N 1.31690 * 120.79645 * 359.96318 * 28 27 26 30 30 C 1.32296 * 122.03271 * 359.97438 * 29 28 27 31 31 C 1.51481 * 130.13828 * 180.02562 * 30 29 28 32 32 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 33 33 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 34 34 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 35 35 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 36 36 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 37 37 H 0.96998 * 119.99596 * 179.97438 * 9 8 6 38 38 H 1.08993 * 109.88066 * 239.51797 * 14 5 4 39 39 H 1.08996 * 110.00664 * 118.42784 * 14 5 4 40 40 H 1.08995 * 109.47357 * 48.52208 * 17 15 14 41 41 H 1.09003 * 109.46720 * 168.52334 * 17 15 14 42 42 H 1.09004 * 109.46912 * 300.00582 * 18 17 15 43 43 H 1.08999 * 109.46563 * 60.00095 * 18 17 15 44 44 H 0.96997 * 120.00340 * 0.02562 * 19 18 17 45 45 H 1.08999 * 110.31665 * 26.98030 * 24 22 20 46 46 H 1.09004 * 110.31460 * 149.15984 * 24 22 20 47 47 H 1.07995 * 120.71749 * 0.02562 * 26 25 24 48 48 H 1.08001 * 120.50044 * 180.02562 * 27 26 25 49 49 H 1.07996 * 119.60355 * 179.97438 * 28 27 26 50 50 H 1.08997 * 110.29599 * 78.22539 * 31 30 29 51 51 H 1.08999 * 110.29594 * 316.08943 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4652 -1.5658 -1.6060 7 1 5.4137 -1.8754 -1.1926 8 6 4.2979 -1.4950 -2.9821 9 7 3.1419 -1.1174 -3.4859 10 14 5.7130 -1.9356 -4.1191 11 1 5.6598 -3.3853 -4.4367 12 1 5.6028 -1.1495 -5.3741 13 1 7.0013 -1.6224 -3.4502 14 6 3.4678 -1.2731 0.6969 15 6 2.0861 -0.8075 1.2025 16 1 1.4471 -1.6631 1.4211 17 6 2.2341 0.0883 2.4340 18 6 2.6643 -0.7596 3.6328 19 7 2.8054 0.0980 4.8120 20 6 3.1781 -0.4353 5.9924 21 8 3.3971 -1.6251 6.0781 22 6 3.3228 0.4468 7.2056 23 1 4.0285 1.2549 7.0131 24 6 3.7568 -0.3788 8.4357 25 6 2.4673 -0.7828 9.1145 26 6 2.2115 -1.7676 10.0578 27 6 0.9135 -1.9233 10.5175 28 6 -0.0768 -1.0964 10.0213 29 7 0.2025 -0.1722 9.1258 30 6 1.4287 0.0086 8.6630 31 6 1.9520 1.0021 7.6462 32 1 -0.3633 0.5029 0.8962 33 1 -0.3633 0.5248 -0.8836 34 1 -0.3633 -1.0275 -0.0125 35 1 1.4531 -1.6706 -1.4022 36 1 2.1567 -0.1721 -2.0834 37 1 3.0251 -1.0676 -4.4475 38 1 4.2425 -0.5984 1.0609 39 1 3.6669 -2.2872 1.0433 40 1 2.9877 0.8514 2.2397 41 1 1.2795 0.5673 2.6516 42 1 1.9106 -1.5229 3.8270 43 1 3.6188 -1.2387 3.4150 44 1 2.6299 1.0495 4.7436 45 1 4.3121 -1.2625 8.1215 46 1 4.3624 0.2311 9.1062 47 1 3.0068 -2.3985 10.4263 48 1 0.6792 -2.6797 11.2519 49 1 -1.0918 -1.2095 10.3725 50 1 2.0707 1.9843 8.1037 51 1 1.2766 1.0608 6.7927 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103679476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:48 Heat of formation + Delta-G solvation = -12.988871 kcal Electronic energy + Delta-G solvation = -29293.970270 eV Core-core repulsion = 25385.016302 eV Total energy + Delta-G solvation = -3908.953968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.98316 -40.53100 -39.71698 -37.01797 -36.37794 -35.01576 -33.58841 -32.56344 -32.48946 -30.56399 -28.80381 -28.44146 -27.42915 -25.92208 -24.84621 -23.49428 -22.84815 -22.70877 -21.45425 -21.02354 -20.47324 -18.87431 -18.40945 -17.67002 -17.18553 -17.01854 -16.95486 -16.44501 -16.13357 -15.81425 -15.71330 -15.51714 -14.94172 -14.74457 -14.58882 -14.27243 -14.16880 -13.83654 -13.77460 -13.64248 -13.49162 -13.35508 -13.12371 -12.86123 -12.80730 -12.75839 -12.73147 -12.50523 -12.40243 -12.29111 -12.17754 -11.95020 -11.78226 -11.43778 -11.26628 -11.10033 -10.80875 -10.72558 -10.67310 -10.27578 -10.08869 -9.64501 -8.87905 -7.77552 -5.22259 0.15459 0.34111 1.44414 1.46606 1.55388 1.61468 2.17470 2.48618 2.80064 2.99846 3.30724 3.45768 3.61858 3.71164 3.73039 3.82225 3.92197 3.95235 4.05484 4.07713 4.21983 4.27088 4.34038 4.39596 4.47652 4.51489 4.61699 4.62535 4.73264 4.74713 4.79274 4.82659 4.83698 4.90230 4.98270 5.01300 5.03534 5.05774 5.12278 5.20001 5.22262 5.28588 5.31197 5.40122 5.45398 5.47491 5.55035 5.76500 5.79284 5.85569 6.32244 6.58597 7.03036 7.11333 7.27967 7.79272 8.43379 9.23667 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.001899 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.349969 B =14738.417096 C =15430.129635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.074 0.926 4 C 0.159 3.841 5 N -0.630 5.630 6 C -0.240 4.240 7 H 0.077 0.923 8 C -0.069 4.069 9 N -0.948 5.948 10 Si 0.980 3.020 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.269 1.269 14 C 0.134 3.866 15 C -0.079 4.079 16 H 0.072 0.928 17 C -0.099 4.099 18 C 0.125 3.875 19 N -0.713 5.713 20 C 0.511 3.489 21 O -0.585 6.585 22 C -0.101 4.101 23 H 0.159 0.841 24 C -0.066 4.066 25 C -0.155 4.155 26 C -0.079 4.079 27 C -0.172 4.172 28 C 0.082 3.918 29 N -0.509 5.509 30 C 0.089 3.911 31 C -0.054 4.054 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.044 0.956 35 H -0.020 1.020 36 H 0.070 0.930 37 H 0.247 0.753 38 H 0.028 0.972 39 H 0.008 0.992 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.419 0.581 45 H 0.077 0.923 46 H 0.120 0.880 47 H 0.149 0.851 48 H 0.164 0.836 49 H 0.178 0.822 50 H 0.131 0.869 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 8.003 29.643 31.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.093 0.907 4 C 0.034 3.966 5 N -0.356 5.356 6 C -0.369 4.369 7 H 0.095 0.905 8 C -0.262 4.262 9 N -0.598 5.598 10 Si 0.808 3.192 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.194 1.194 14 C 0.009 3.991 15 C -0.099 4.099 16 H 0.091 0.909 17 C -0.137 4.137 18 C 0.001 3.999 19 N -0.365 5.365 20 C 0.299 3.701 21 O -0.465 6.465 22 C -0.122 4.122 23 H 0.177 0.823 24 C -0.103 4.103 25 C -0.157 4.157 26 C -0.105 4.105 27 C -0.192 4.192 28 C -0.074 4.074 29 N -0.219 5.219 30 C -0.049 4.049 31 C -0.092 4.092 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.063 0.937 35 H -0.002 1.002 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.026 0.974 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.256 0.744 45 H 0.096 0.904 46 H 0.138 0.862 47 H 0.167 0.833 48 H 0.182 0.818 49 H 0.195 0.805 50 H 0.148 0.852 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.877 7.678 29.175 30.560 hybrid contribution 1.182 -1.211 -0.861 1.898 sum -3.696 6.466 28.315 29.278 Atomic orbital electron populations 1.21596 0.93097 1.01464 1.02308 1.22471 0.96430 0.98523 0.94519 0.90744 1.21791 0.83559 0.94774 0.96451 1.44864 1.10525 1.78960 1.01204 1.19450 0.91917 1.37380 0.88169 0.90544 1.25654 0.99874 1.02549 0.98089 1.70075 1.24120 1.54844 1.10738 0.85048 0.78741 0.77226 0.78141 1.21577 1.21643 1.19413 1.21565 0.96690 0.96911 0.83897 1.22050 0.95139 0.98195 0.94500 0.90919 1.21627 1.03419 0.97461 0.91184 1.21227 1.00566 0.93489 0.84614 1.45876 1.69180 1.12970 1.08511 1.21077 0.75365 0.88479 0.85225 1.90696 1.51776 1.18343 1.85724 1.22109 0.99723 0.98970 0.91384 0.82321 1.20945 0.94005 1.00739 0.94627 1.21739 0.98479 0.97298 0.98159 1.21455 0.98118 0.96028 0.94860 1.22411 0.93211 1.01487 1.02077 1.23101 1.01110 0.90812 0.92413 1.66844 1.22298 1.20836 1.11882 1.22266 0.88608 0.96936 0.97060 1.21017 0.93657 0.97812 0.96742 0.90090 0.92914 0.93659 1.00188 0.91247 0.94347 0.95379 0.97426 0.90337 0.88505 0.92896 0.93313 0.74374 0.90446 0.86167 0.83346 0.81804 0.80498 0.85151 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.29 71.98 0.67 -2.96 16 2 C -0.10 -3.55 3.09 -9.40 -0.03 -3.58 16 3 H 0.07 2.58 8.05 -2.39 -0.02 2.56 16 4 C 0.16 7.98 5.36 86.86 0.47 8.45 16 5 N -0.63 -33.60 3.39 -691.99 -2.35 -35.95 16 6 C -0.24 -13.95 10.27 84.03 0.86 -13.08 16 7 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 8 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 9 N -0.95 -57.65 10.09 21.65 0.22 -57.43 16 10 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 14 C 0.13 5.69 6.23 86.73 0.54 6.23 16 15 C -0.08 -2.57 2.40 -9.61 -0.02 -2.59 16 16 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 17 C -0.10 -2.22 4.73 30.59 0.14 -2.07 16 18 C 0.13 3.00 5.56 86.38 0.48 3.48 16 19 N -0.71 -12.83 5.44 -463.07 -2.52 -15.35 16 20 C 0.51 10.94 7.08 87.66 0.62 11.56 16 21 O -0.59 -18.65 15.53 -3.03 -0.05 -18.70 16 22 C -0.10 -1.24 3.47 -10.63 -0.04 -1.28 16 23 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 24 C -0.07 -0.94 6.08 30.48 0.19 -0.76 16 25 C -0.15 -2.85 6.16 -19.59 -0.12 -2.97 16 26 C -0.08 -1.30 10.17 22.47 0.23 -1.08 16 27 C -0.17 -2.51 10.12 22.35 0.23 -2.28 16 28 C 0.08 1.42 11.18 84.71 0.95 2.37 16 29 N -0.51 -11.16 10.35 -182.98 -1.89 -13.06 16 30 C 0.09 1.73 7.32 42.72 0.31 2.05 16 31 C -0.05 -0.66 6.30 30.55 0.19 -0.47 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 35 H -0.02 -1.09 8.03 -2.39 -0.02 -1.11 16 36 H 0.07 3.97 5.87 -2.39 -0.01 3.96 16 37 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.03 1.15 7.68 -2.39 -0.02 1.14 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.08 1.70 7.93 -2.39 -0.02 1.69 16 41 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.05 1.41 7.68 -2.39 -0.02 1.39 16 44 H 0.42 4.36 8.47 -92.71 -0.79 3.58 16 45 H 0.08 1.47 7.03 -2.39 -0.02 1.46 16 46 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 48 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 49 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 50 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.09 1.11 7.80 -2.39 -0.02 1.10 16 Total: -1.00 -81.88 406.13 1.70 -80.17 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.13 Total: 14.13 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 6.13 Total: -2.57 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -6.54 Total: -121.79 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.05 Total: -18.70 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -81.88 1.70 -80.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103679476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.184 kcal (2) G-P(sol) polarization free energy of solvation -81.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds