Wall clock time and date at job start Wed Apr 1 2020 03:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34784 * 127.83336 * 219.58574 * 5 4 2 7 7 O 1.21276 * 119.99520 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00103 * 359.97438 * 6 5 4 9 9 H 1.09007 * 110.72921 * 56.59696 * 8 6 5 10 10 C 1.54374 * 110.82027 * 179.97438 * 8 6 5 11 11 C 1.51231 * 105.11495 * 144.51830 * 10 8 6 12 12 C 1.38742 * 130.69019 * 162.85509 * 11 10 8 13 13 C 1.38578 * 118.55369 * 179.97438 * 12 11 10 14 14 C 1.38234 * 118.99055 * 0.05968 * 13 12 11 15 15 N 1.31687 * 120.80101 * 359.96577 * 14 13 12 16 16 C 1.32302 * 122.03111 * 359.97438 * 15 14 13 17 17 C 1.51479 * 130.13744 * 180.02562 * 16 15 14 18 18 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 19 19 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 20 20 H 1.09003 * 110.34267 * 0.10023 * 19 2 1 21 21 C 1.53002 * 110.34138 * 237.95320 * 19 2 1 22 22 C 1.53000 * 109.46936 * 174.99869 * 21 19 2 23 23 N 1.46505 * 109.47016 * 179.97438 * 22 21 19 24 24 C 1.36940 * 120.00292 * 179.97438 * 23 22 21 25 25 H 1.08000 * 119.99471 * 359.97438 * 24 23 22 26 26 C 1.38804 * 120.00251 * 180.02562 * 24 23 22 27 27 N 1.31618 * 119.99852 * 359.97438 * 26 24 23 28 28 Si 1.86799 * 120.00151 * 180.02562 * 26 24 23 29 29 H 1.48506 * 109.47045 * 359.97438 * 28 26 24 30 30 H 1.48500 * 109.47114 * 119.99715 * 28 26 24 31 31 H 1.48502 * 109.47171 * 239.99904 * 28 26 24 32 32 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 33 33 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 34 34 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 35 35 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 36 36 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 37 37 H 1.08999 * 110.31645 * 263.43118 * 10 8 6 38 38 H 1.09002 * 110.31048 * 25.51518 * 10 8 6 39 39 H 1.07996 * 120.72491 * 0.02562 * 12 11 10 40 40 H 1.07993 * 120.50297 * 180.02562 * 13 12 11 41 41 H 1.08003 * 119.59683 * 179.97438 * 14 13 12 42 42 H 1.08996 * 110.29564 * 78.23196 * 17 16 15 43 43 H 1.08994 * 110.29527 * 316.09415 * 17 16 15 44 44 H 1.08998 * 110.41105 * 201.63246 * 18 5 4 45 45 H 1.09004 * 110.40870 * 79.19127 * 18 5 4 46 46 H 1.08998 * 109.46863 * 294.99655 * 21 19 2 47 47 H 1.09000 * 109.47400 * 54.99892 * 21 19 2 48 48 H 1.08998 * 109.47170 * 299.99598 * 22 21 19 49 49 H 1.09002 * 109.47536 * 60.00015 * 22 21 19 50 50 H 0.97001 * 120.00234 * 0.02562 * 23 22 21 51 51 H 0.97002 * 120.00165 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4461 -1.6626 -1.3514 7 8 5.3405 -2.2698 -0.8017 8 6 4.6501 -1.1140 -2.7400 9 1 4.4708 -0.0390 -2.7603 10 6 6.0667 -1.4435 -3.2575 11 6 5.8969 -1.6936 -4.7393 12 6 6.8308 -1.7196 -5.7651 13 6 6.3920 -1.9784 -7.0539 14 6 5.0449 -2.1994 -7.2713 15 7 4.1865 -2.1665 -6.2732 16 6 4.5658 -1.9241 -5.0291 17 6 3.7477 -1.8443 -3.7567 18 6 2.8824 -1.9401 0.6333 19 6 2.0663 -0.7703 1.2244 20 1 1.2398 -1.1503 1.8249 21 6 2.9650 0.1343 2.0700 22 6 3.3845 -0.6077 3.3406 23 7 4.2454 0.2582 4.1501 24 6 4.7459 -0.1947 5.3416 25 1 4.5055 -1.1901 5.6848 26 6 5.5612 0.6260 6.1088 27 7 5.8537 1.8392 5.6907 28 14 6.2444 0.0079 7.7338 29 1 5.7711 -1.3789 7.9743 30 1 7.7286 0.0234 7.6846 31 1 5.7764 0.8882 8.8344 32 1 -0.3633 0.5029 0.8962 33 1 -0.3634 0.5247 -0.8837 34 1 -0.3634 -1.0276 -0.0126 35 1 1.3271 -1.4869 -1.5790 36 1 2.3421 -0.0790 -2.0198 37 1 6.7364 -0.5998 -3.0904 38 1 6.4521 -2.3354 -2.7635 39 1 7.8769 -1.5428 -5.5635 40 1 7.0918 -2.0065 -7.8759 41 1 4.6922 -2.4016 -8.2718 42 1 3.5070 -2.8452 -3.3986 43 1 2.8350 -1.2740 -3.9293 44 1 3.7692 -2.1288 1.2384 45 1 2.2675 -2.8377 0.5681 46 1 3.8521 0.4033 1.4968 47 1 2.4192 1.0382 2.3406 48 1 2.4973 -0.8768 3.9139 49 1 3.9303 -1.5117 3.0702 50 1 4.4604 1.1527 3.8424 51 1 6.4237 2.4126 6.2266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104957880.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:42 Heat of formation + Delta-G solvation = -17.893568 kcal Electronic energy + Delta-G solvation = -29642.794229 eV Core-core repulsion = 25733.627577 eV Total energy + Delta-G solvation = -3909.166652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.03124 -40.99660 -39.30381 -36.93621 -36.86465 -34.52174 -33.63981 -33.43651 -31.82961 -30.74081 -28.92000 -28.45719 -27.25838 -26.30758 -24.93955 -24.08941 -22.83225 -22.57615 -21.81392 -20.73839 -20.11218 -19.17684 -18.43171 -17.64725 -17.40651 -16.97093 -16.82191 -16.66281 -15.94930 -15.65440 -15.57213 -15.39896 -15.30723 -14.95060 -14.66516 -14.35418 -14.16285 -14.00428 -13.84505 -13.74487 -13.60311 -13.30668 -13.19756 -13.05551 -12.87540 -12.80401 -12.67525 -12.44966 -12.39715 -12.33310 -12.22750 -12.08848 -11.91160 -11.58008 -11.43647 -11.22733 -10.95482 -10.94449 -10.69937 -10.30632 -9.74776 -9.69644 -9.03715 -7.99126 -5.28487 0.11001 0.30659 1.43647 1.45582 1.51550 1.55684 1.89095 2.52802 2.77160 2.89601 3.24475 3.34214 3.51751 3.60986 3.61453 3.71265 3.80653 3.88722 4.05016 4.12827 4.16491 4.20224 4.28642 4.34015 4.37635 4.44825 4.49279 4.56461 4.59790 4.65128 4.69489 4.73669 4.76810 4.77529 4.83382 4.89816 4.91653 4.95791 5.02219 5.04276 5.18785 5.21532 5.26905 5.28477 5.31918 5.39493 5.41680 5.45990 5.61680 5.75784 6.23832 6.54700 6.99751 7.08367 7.29002 8.05334 8.28286 9.24905 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.002239 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.085473 B =12500.567734 C =13994.243334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 H 0.078 0.922 4 C 0.101 3.899 5 N -0.618 5.618 6 C 0.537 3.463 7 O -0.586 6.586 8 C -0.094 4.094 9 H 0.131 0.869 10 C -0.066 4.066 11 C -0.157 4.157 12 C -0.072 4.072 13 C -0.166 4.166 14 C 0.091 3.909 15 N -0.504 5.504 16 C 0.100 3.900 17 C -0.047 4.047 18 C 0.102 3.898 19 C -0.085 4.085 20 H 0.103 0.897 21 C -0.101 4.101 22 C 0.150 3.850 23 N -0.749 5.749 24 C -0.248 4.248 25 H 0.074 0.926 26 C -0.079 4.079 27 N -0.970 5.970 28 Si 0.977 3.023 29 H -0.266 1.266 30 H -0.293 1.293 31 H -0.288 1.288 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.151 0.849 40 H 0.169 0.831 41 H 0.184 0.816 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.040 0.960 47 H 0.066 0.934 48 H 0.026 0.974 49 H 0.010 0.990 50 H 0.372 0.628 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 -5.949 -29.718 31.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 H 0.096 0.904 4 C -0.020 4.020 5 N -0.350 5.350 6 C 0.327 3.673 7 O -0.466 6.466 8 C -0.116 4.116 9 H 0.149 0.851 10 C -0.104 4.104 11 C -0.159 4.159 12 C -0.098 4.098 13 C -0.186 4.186 14 C -0.066 4.066 15 N -0.213 5.213 16 C -0.037 4.037 17 C -0.085 4.085 18 C -0.020 4.020 19 C -0.104 4.104 20 H 0.121 0.879 21 C -0.139 4.139 22 C 0.024 3.976 23 N -0.391 5.391 24 C -0.379 4.379 25 H 0.092 0.908 26 C -0.271 4.271 27 N -0.621 5.621 28 Si 0.805 3.195 29 H -0.191 1.191 30 H -0.220 1.220 31 H -0.215 1.215 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.169 0.831 40 H 0.187 0.813 41 H 0.201 0.799 42 H 0.104 0.896 43 H 0.134 0.866 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.059 0.941 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.028 0.972 50 H 0.204 0.796 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.898 -6.587 -29.531 31.834 hybrid contribution 1.950 0.291 1.427 2.434 sum -7.948 -6.296 -28.104 29.877 Atomic orbital electron populations 1.21787 0.91932 1.02937 1.02768 1.22164 0.97606 0.99278 0.92679 0.90358 1.22863 0.85805 0.96250 0.97085 1.49021 1.13275 1.55289 1.17394 1.20367 0.80182 0.79003 0.87795 1.90721 1.42924 1.44244 1.68741 1.21884 0.97078 1.02819 0.89803 0.85122 1.20811 0.96225 1.03380 0.89957 1.21535 0.95814 1.01995 0.96556 1.21458 1.00624 0.95772 0.91956 1.22450 0.97865 1.00369 0.97882 1.23203 0.89950 0.95173 0.98305 1.66859 1.40880 1.13834 0.99708 1.21882 0.93327 0.95924 0.92568 1.20818 0.97925 1.01965 0.87778 1.22509 0.98781 0.97676 0.83076 1.22123 0.97423 0.94566 0.96324 0.87901 1.21609 0.98771 0.98702 0.94786 1.20891 0.92439 0.92977 0.91326 1.42626 1.58550 1.15944 1.22010 1.19694 1.22816 0.98567 0.96852 0.90791 1.25640 1.01757 0.96695 1.03034 1.69829 1.42686 1.09189 1.40418 0.85027 0.77409 0.77840 0.79219 1.19051 1.21999 1.21508 0.92559 0.90725 0.91360 0.88132 0.88180 0.89202 0.90180 0.83116 0.81304 0.79866 0.89606 0.86641 0.93020 0.89122 0.94104 0.91520 0.95650 0.97220 0.79631 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.92 71.98 0.64 -0.85 16 2 C -0.10 -1.52 3.30 -9.89 -0.03 -1.55 16 3 H 0.08 1.35 7.71 -2.39 -0.02 1.33 16 4 C 0.10 1.35 5.85 86.54 0.51 1.85 16 5 N -0.62 -13.78 3.32 -807.97 -2.68 -16.46 16 6 C 0.54 14.28 7.15 87.65 0.63 14.91 16 7 O -0.59 -21.78 15.77 -3.02 -0.05 -21.83 16 8 C -0.09 -1.77 2.64 -10.63 -0.03 -1.80 16 9 H 0.13 1.90 7.84 -2.38 -0.02 1.89 16 10 C -0.07 -1.36 6.11 30.48 0.19 -1.18 16 11 C -0.16 -2.98 6.16 -19.59 -0.12 -3.10 16 12 C -0.07 -1.09 10.17 22.47 0.23 -0.86 16 13 C -0.17 -1.96 10.12 22.35 0.23 -1.73 16 14 C 0.09 1.28 11.18 84.71 0.95 2.23 16 15 N -0.50 -9.96 10.35 -182.97 -1.89 -11.85 16 16 C 0.10 1.96 7.32 42.72 0.31 2.27 16 17 C -0.05 -0.76 5.64 30.54 0.17 -0.58 16 18 C 0.10 2.55 6.45 86.54 0.56 3.11 16 19 C -0.08 -1.90 2.71 -9.89 -0.03 -1.92 16 20 H 0.10 2.05 7.71 -2.39 -0.02 2.03 16 21 C -0.10 -3.26 4.55 30.60 0.14 -3.12 16 22 C 0.15 6.31 6.12 86.38 0.53 6.84 16 23 N -0.75 -40.68 5.60 -343.44 -1.92 -42.60 16 24 C -0.25 -14.64 9.99 84.03 0.84 -13.80 16 25 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 26 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 27 N -0.97 -61.69 13.06 21.65 0.28 -61.40 16 28 Si 0.98 47.96 29.55 68.60 2.03 49.98 16 29 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 30 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 31 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.07 0.63 8.13 -2.38 -0.02 0.61 16 35 H 0.10 0.90 7.85 -2.39 -0.02 0.89 16 36 H 0.10 0.93 6.83 -2.39 -0.02 0.92 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 2.06 6.98 -2.39 -0.02 2.04 16 39 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 41 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.09 1.51 7.89 -2.39 -0.02 1.49 16 43 H 0.12 1.29 7.71 -2.39 -0.02 1.27 16 44 H 0.05 1.74 6.15 -2.39 -0.01 1.73 16 45 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.01 0.44 6.67 -2.39 -0.02 0.42 16 50 H 0.37 21.37 7.67 -92.71 -0.71 20.66 16 51 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -81.10 405.27 2.15 -78.95 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.22 Total: 28.81 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 6.17 Total: -3.60 kcal Atomic # 7 Polarization: -126.10 SS G_CDS: -6.21 Total: -132.31 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.98 kcal Total: -81.10 2.15 -78.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104957880.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.052 kcal (2) G-P(sol) polarization free energy of solvation -81.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds