Wall clock time and date at job start Wed Apr 1 2020 03:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.28813 * 2 1 4 4 C 1.53996 * 110.32899 * 237.86091 * 2 1 3 5 5 N 1.47480 * 107.08630 * 242.31410 * 4 2 1 6 6 C 1.34776 * 127.03965 * 154.51769 * 5 4 2 7 7 O 1.21515 * 120.00469 * 180.02562 * 6 5 4 8 8 C 1.48175 * 119.99484 * 0.02562 * 6 5 4 9 9 C 1.39172 * 119.81927 * 180.02562 * 8 6 5 10 10 C 1.38996 * 119.25397 * 180.02562 * 9 8 6 11 11 C 1.37860 * 118.55744 * 359.82890 * 10 9 8 12 12 C 1.39120 * 119.07189 * 359.97438 * 11 10 9 13 13 N 1.31322 * 121.19840 * 0.37528 * 12 11 10 14 14 C 1.50506 * 122.49206 * 180.25550 * 11 10 9 15 15 C 1.52782 * 110.47582 * 342.38764 * 14 11 10 16 16 C 1.53316 * 108.49943 * 51.11363 * 15 14 11 17 17 C 1.50360 * 118.62254 * 179.72991 * 10 9 8 18 18 C 1.48121 * 105.93044 * 334.77572 * 5 4 2 19 19 C 1.54597 * 103.42347 * 39.02804 * 18 5 4 20 20 H 1.08998 * 110.57958 * 81.16266 * 19 18 5 21 21 C 1.52997 * 110.98716 * 204.37613 * 19 18 5 22 22 N 1.46500 * 109.47176 * 288.64429 * 21 19 18 23 23 C 1.36932 * 120.00174 * 180.02562 * 22 21 19 24 24 H 1.08002 * 120.00368 * 0.02562 * 23 22 21 25 25 C 1.38811 * 119.99896 * 180.02562 * 23 22 21 26 26 N 1.31624 * 120.00038 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 120.00256 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47319 * 89.99573 * 27 25 23 29 29 H 1.48502 * 109.47256 * 210.00164 * 27 25 23 30 30 H 1.48501 * 109.46890 * 329.99810 * 27 25 23 31 31 H 1.08995 * 109.47468 * 180.68713 * 1 2 3 32 32 H 1.09007 * 109.47127 * 300.68429 * 1 2 3 33 33 H 1.08997 * 109.47225 * 60.68325 * 1 2 3 34 34 H 1.08998 * 109.91411 * 122.94468 * 4 2 1 35 35 H 1.09000 * 110.07078 * 1.76324 * 4 2 1 36 36 H 1.08005 * 120.37328 * 359.97438 * 9 8 6 37 37 H 1.08006 * 119.40327 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.30001 * 102.69378 * 14 11 10 39 39 H 1.08996 * 109.30084 * 222.07513 * 14 11 10 40 40 H 1.09001 * 109.63424 * 170.82242 * 15 14 11 41 41 H 1.08999 * 109.63205 * 291.41344 * 15 14 11 42 42 H 1.09005 * 109.64044 * 49.82483 * 16 15 14 43 43 H 1.09001 * 109.64273 * 170.23207 * 16 15 14 44 44 H 1.08998 * 109.31125 * 42.44750 * 17 10 9 45 45 H 1.09008 * 109.12381 * 282.96969 * 17 10 9 46 46 H 1.09001 * 110.66202 * 157.50936 * 18 5 4 47 47 H 1.09001 * 110.66247 * 280.62736 * 18 5 4 48 48 H 1.08994 * 109.47685 * 48.65240 * 21 19 18 49 49 H 1.09002 * 109.46802 * 168.64978 * 21 19 18 50 50 H 0.97006 * 119.99959 * 0.02562 * 22 21 19 51 51 H 0.97001 * 120.00105 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0225 0.0000 4 6 2.0650 -0.7682 -1.2228 5 7 2.8297 -1.9203 -0.7101 6 6 3.0645 -3.0860 -1.3445 7 8 3.7152 -3.9548 -0.7983 8 6 2.5292 -3.3081 -2.7082 9 6 2.7734 -4.5134 -3.3597 10 6 2.2661 -4.7090 -4.6389 11 6 1.5314 -3.6967 -5.2184 12 6 1.3233 -2.5196 -4.5066 13 7 1.8192 -2.3567 -3.3015 14 6 0.9364 -3.8159 -6.5958 15 6 1.6058 -4.9497 -7.3708 16 6 1.5815 -6.2131 -6.5025 17 6 2.5437 -6.0141 -5.3321 18 6 3.2816 -1.5367 0.6474 19 6 2.0692 -0.7719 1.2264 20 1 1.3209 -1.4691 1.6032 21 6 2.5071 0.1968 2.3267 22 7 2.9000 -0.5615 3.5170 23 6 3.3307 0.0976 4.6374 24 1 3.3804 1.1764 4.6438 25 6 3.7035 -0.6210 5.7651 26 7 4.1180 0.0125 6.8418 27 14 3.6183 -2.4870 5.7540 28 1 4.9126 -3.0388 5.2791 29 1 3.3451 -2.9782 7.1285 30 1 2.5293 -2.9273 4.8454 31 1 -0.3634 -1.0275 0.0123 32 1 -0.3634 0.5245 0.8838 33 1 -0.3633 0.5032 -0.8960 34 1 2.7166 -0.1222 -1.8111 35 1 1.2354 -1.1172 -1.8376 36 1 3.3514 -5.2877 -2.8771 37 1 0.7481 -1.7232 -4.9553 38 1 -0.1311 -4.0188 -6.5107 39 1 1.0803 -2.8784 -7.1327 40 1 1.0612 -5.1315 -8.2973 41 1 2.6376 -4.6800 -7.5961 42 1 0.5728 -6.3779 -6.1236 43 1 1.8946 -7.0719 -7.0963 44 1 2.4219 -6.8323 -4.6223 45 1 3.5682 -6.0099 -5.7045 46 1 3.4980 -2.4221 1.2452 47 1 4.1540 -0.8856 0.5926 48 1 3.3538 0.7866 1.9758 49 1 1.6799 0.8614 2.5760 50 1 2.8551 -1.5305 3.5115 51 1 4.3781 -0.4896 7.6300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106400210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:24 Heat of formation + Delta-G solvation = 4.082316 kcal Electronic energy + Delta-G solvation = -29862.224340 eV Core-core repulsion = 25954.010634 eV Total energy + Delta-G solvation = -3908.213706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.28355 -39.83198 -37.99543 -37.13606 -34.79321 -33.27966 -32.86551 -31.69013 -31.44704 -30.04376 -29.32413 -26.49677 -25.98442 -24.59030 -24.13132 -23.13138 -22.76349 -21.24246 -20.59568 -19.96471 -19.35088 -17.81714 -17.37221 -16.74958 -16.20373 -15.94809 -15.66413 -15.15695 -15.12595 -14.66828 -14.42691 -14.38987 -14.25223 -13.89530 -13.65135 -13.60434 -13.25540 -13.15462 -12.95201 -12.75588 -12.69786 -12.51537 -12.34786 -12.08389 -11.91164 -11.49054 -11.46114 -11.44093 -11.24074 -11.09803 -10.87855 -10.55530 -10.45704 -10.41316 -10.16924 -10.04345 -9.81477 -9.54707 -9.49367 -9.28656 -8.85715 -8.55713 -7.19264 -5.72836 -3.08255 0.36471 0.84913 2.59377 2.88153 3.43543 3.47583 3.51074 3.58666 3.84774 4.05595 4.10242 4.32911 4.37322 4.39131 4.55989 4.64234 4.70579 4.77619 4.81862 4.90638 4.95019 4.96269 5.08382 5.16170 5.28856 5.34503 5.39287 5.39837 5.43106 5.49670 5.53251 5.56321 5.58881 5.67203 5.69387 5.74648 5.77538 5.84509 5.89100 5.95107 6.04056 6.12749 6.15041 6.20458 6.26823 6.31564 6.52430 6.67726 6.79510 7.40423 7.57724 8.02823 8.10971 8.46139 9.25114 9.97851 10.17374 11.45466 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002318 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.442601 B =12078.074762 C =13114.214245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.087 0.913 4 C 0.107 3.893 5 N -0.599 5.599 6 C 0.583 3.417 7 O -0.537 6.537 8 C 0.082 3.918 9 C -0.110 4.110 10 C -0.042 4.042 11 C -0.111 4.111 12 C 0.098 3.902 13 N -0.452 5.452 14 C -0.079 4.079 15 C -0.122 4.122 16 C -0.121 4.121 17 C -0.085 4.085 18 C 0.110 3.890 19 C -0.107 4.107 20 H 0.082 0.918 21 C 0.170 3.830 22 N -0.757 5.757 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.004 3.996 26 N -0.934 5.934 27 Si 0.883 3.117 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.030 0.970 49 H 0.032 0.968 50 H 0.361 0.639 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 -8.395 -34.052 36.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 H 0.105 0.895 4 C -0.016 4.016 5 N -0.331 5.331 6 C 0.370 3.630 7 O -0.414 6.414 8 C -0.055 4.055 9 C -0.131 4.131 10 C -0.049 4.049 11 C -0.113 4.113 12 C -0.063 4.063 13 N -0.163 5.163 14 C -0.117 4.117 15 C -0.159 4.159 16 C -0.158 4.158 17 C -0.122 4.122 18 C -0.011 4.011 19 C -0.126 4.126 20 H 0.100 0.900 21 C 0.042 3.958 22 N -0.402 5.402 23 C -0.373 4.373 24 H 0.108 0.892 25 C -0.191 4.191 26 N -0.582 5.582 27 Si 0.713 3.287 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.203 1.203 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.165 0.835 37 H 0.178 0.822 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.048 0.952 49 H 0.050 0.950 50 H 0.194 0.806 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.654 -7.976 -33.142 35.170 hybrid contribution 0.155 -1.970 -0.195 1.985 sum -8.499 -9.946 -33.337 35.812 Atomic orbital electron populations 1.21802 0.94226 1.01755 1.01824 1.22151 0.96387 0.99823 0.93915 0.89451 1.22526 0.96741 0.86447 0.95911 1.48621 1.52133 1.14526 1.17771 1.17464 0.80341 0.81101 0.84097 1.90805 1.40875 1.43043 1.66726 1.21042 0.97819 0.91490 0.95111 1.22118 0.98824 0.97937 0.94247 1.19877 0.95398 0.96090 0.93574 1.20760 0.98300 0.94542 0.97730 1.22903 0.97112 0.96195 0.90082 1.67744 1.07812 1.30573 1.10183 1.20446 0.99996 1.00052 0.91160 1.21575 1.01415 0.94657 0.98258 1.21575 0.99882 0.98077 0.96280 1.20512 1.00599 0.93507 0.97542 1.22597 0.97280 0.99942 0.81312 1.22568 0.96948 0.97994 0.95139 0.89996 1.20607 0.97217 0.92581 0.85375 1.42742 1.80933 1.04531 1.12026 1.19042 1.35719 0.93146 0.89380 0.89185 1.24666 1.01234 0.97275 0.95963 1.69705 1.50650 1.34309 1.03583 0.86574 0.78034 0.87346 0.76766 1.20950 1.21741 1.20329 0.92889 0.92001 0.92645 0.91851 0.87821 0.83509 0.82155 0.89967 0.90049 0.91003 0.91423 0.91400 0.90950 0.89868 0.89768 0.89758 0.90184 0.95174 0.95000 0.80642 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.90 37.16 0.33 -1.18 16 2 C -0.10 -1.27 3.17 -89.25 -0.28 -1.55 16 3 H 0.09 1.01 7.85 -51.92 -0.41 0.60 16 4 C 0.11 1.31 5.74 -2.99 -0.02 1.29 16 5 N -0.60 -9.08 3.29 -170.97 -0.56 -9.64 16 6 C 0.58 9.38 7.88 -12.18 -0.10 9.29 16 7 O -0.54 -10.27 16.54 5.35 0.09 -10.18 16 8 C 0.08 1.06 6.72 -83.06 -0.56 0.50 16 9 C -0.11 -1.22 9.26 -38.95 -0.36 -1.59 16 10 C -0.04 -0.35 5.74 -104.64 -0.60 -0.95 16 11 C -0.11 -0.82 5.75 -104.53 -0.60 -1.42 16 12 C 0.10 0.81 10.79 -17.44 -0.19 0.62 16 13 N -0.45 -5.05 6.73 -9.73 -0.07 -5.11 16 14 C -0.08 -0.35 5.71 -28.09 -0.16 -0.51 16 15 C -0.12 -0.48 5.97 -26.68 -0.16 -0.64 16 16 C -0.12 -0.53 5.98 -26.66 -0.16 -0.69 16 17 C -0.08 -0.50 5.71 -28.14 -0.16 -0.66 16 18 C 0.11 1.82 6.44 -2.31 -0.01 1.81 16 19 C -0.11 -1.68 2.60 -88.93 -0.23 -1.91 16 20 H 0.08 1.37 7.86 -51.93 -0.41 0.96 16 21 C 0.17 3.24 5.58 -4.04 -0.02 3.22 16 22 N -0.76 -18.29 5.33 -59.91 -0.32 -18.61 16 23 C -0.24 -7.00 10.47 -15.06 -0.16 -7.15 16 24 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 25 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 26 N -0.93 -29.88 13.97 55.49 0.78 -29.11 16 27 Si 0.88 22.96 27.74 -169.99 -4.71 18.25 16 28 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 30 H -0.28 -6.86 6.52 56.52 0.37 -6.49 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.21 5.41 -51.93 -0.28 0.93 16 36 H 0.15 1.62 7.64 -52.48 -0.40 1.22 16 37 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.27 8.13 -51.93 -0.42 -0.15 16 40 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 42 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 43 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.08 1.56 7.85 -51.93 -0.41 1.16 16 47 H 0.08 1.31 7.95 -51.93 -0.41 0.90 16 48 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 49 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.36 8.69 5.53 -40.82 -0.23 8.46 16 51 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -34.89 400.51 -10.76 -45.65 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.46 Total: 4.21 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.54 Total: -1.49 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.17 Total: -62.48 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.71 Total: 18.25 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.89 -10.76 -45.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106400210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.734 kcal (2) G-P(sol) polarization free energy of solvation -34.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds