Wall clock time and date at job start Wed Apr 1 2020 03:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.28813 * 2 1 4 4 C 1.53996 * 110.32899 * 237.86091 * 2 1 3 5 5 N 1.47480 * 107.08630 * 242.31410 * 4 2 1 6 6 C 1.34776 * 127.03965 * 154.51769 * 5 4 2 7 7 O 1.21515 * 120.00469 * 180.02562 * 6 5 4 8 8 C 1.48175 * 119.99484 * 0.02562 * 6 5 4 9 9 C 1.39172 * 119.81927 * 180.02562 * 8 6 5 10 10 C 1.38996 * 119.25397 * 180.02562 * 9 8 6 11 11 C 1.37860 * 118.55744 * 359.82890 * 10 9 8 12 12 C 1.39120 * 119.07189 * 359.97438 * 11 10 9 13 13 N 1.31322 * 121.19840 * 0.37528 * 12 11 10 14 14 C 1.50506 * 122.49206 * 180.25550 * 11 10 9 15 15 C 1.52782 * 110.47582 * 342.38764 * 14 11 10 16 16 C 1.53316 * 108.49943 * 51.11363 * 15 14 11 17 17 C 1.50360 * 118.62254 * 179.72991 * 10 9 8 18 18 C 1.48121 * 105.93044 * 334.77572 * 5 4 2 19 19 C 1.54597 * 103.42347 * 39.02804 * 18 5 4 20 20 H 1.08998 * 110.57958 * 81.16266 * 19 18 5 21 21 C 1.52997 * 110.98716 * 204.37613 * 19 18 5 22 22 N 1.46500 * 109.47176 * 288.64429 * 21 19 18 23 23 C 1.36932 * 120.00174 * 180.02562 * 22 21 19 24 24 H 1.08002 * 120.00368 * 0.02562 * 23 22 21 25 25 C 1.38811 * 119.99896 * 180.02562 * 23 22 21 26 26 N 1.31624 * 120.00038 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 120.00256 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47319 * 89.99573 * 27 25 23 29 29 H 1.48502 * 109.47256 * 210.00164 * 27 25 23 30 30 H 1.48501 * 109.46890 * 329.99810 * 27 25 23 31 31 H 1.08995 * 109.47468 * 180.68713 * 1 2 3 32 32 H 1.09007 * 109.47127 * 300.68429 * 1 2 3 33 33 H 1.08997 * 109.47225 * 60.68325 * 1 2 3 34 34 H 1.08998 * 109.91411 * 122.94468 * 4 2 1 35 35 H 1.09000 * 110.07078 * 1.76324 * 4 2 1 36 36 H 1.08005 * 120.37328 * 359.97438 * 9 8 6 37 37 H 1.08006 * 119.40327 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.30001 * 102.69378 * 14 11 10 39 39 H 1.08996 * 109.30084 * 222.07513 * 14 11 10 40 40 H 1.09001 * 109.63424 * 170.82242 * 15 14 11 41 41 H 1.08999 * 109.63205 * 291.41344 * 15 14 11 42 42 H 1.09005 * 109.64044 * 49.82483 * 16 15 14 43 43 H 1.09001 * 109.64273 * 170.23207 * 16 15 14 44 44 H 1.08998 * 109.31125 * 42.44750 * 17 10 9 45 45 H 1.09008 * 109.12381 * 282.96969 * 17 10 9 46 46 H 1.09001 * 110.66202 * 157.50936 * 18 5 4 47 47 H 1.09001 * 110.66247 * 280.62736 * 18 5 4 48 48 H 1.08994 * 109.47685 * 48.65240 * 21 19 18 49 49 H 1.09002 * 109.46802 * 168.64978 * 21 19 18 50 50 H 0.97006 * 119.99959 * 0.02562 * 22 21 19 51 51 H 0.97001 * 120.00105 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0225 0.0000 4 6 2.0650 -0.7682 -1.2228 5 7 2.8297 -1.9203 -0.7101 6 6 3.0645 -3.0860 -1.3445 7 8 3.7152 -3.9548 -0.7983 8 6 2.5292 -3.3081 -2.7082 9 6 2.7734 -4.5134 -3.3597 10 6 2.2661 -4.7090 -4.6389 11 6 1.5314 -3.6967 -5.2184 12 6 1.3233 -2.5196 -4.5066 13 7 1.8192 -2.3567 -3.3015 14 6 0.9364 -3.8159 -6.5958 15 6 1.6058 -4.9497 -7.3708 16 6 1.5815 -6.2131 -6.5025 17 6 2.5437 -6.0141 -5.3321 18 6 3.2816 -1.5367 0.6474 19 6 2.0692 -0.7719 1.2264 20 1 1.3209 -1.4691 1.6032 21 6 2.5071 0.1968 2.3267 22 7 2.9000 -0.5615 3.5170 23 6 3.3307 0.0976 4.6374 24 1 3.3804 1.1764 4.6438 25 6 3.7035 -0.6210 5.7651 26 7 4.1180 0.0125 6.8418 27 14 3.6183 -2.4870 5.7540 28 1 4.9126 -3.0388 5.2791 29 1 3.3451 -2.9782 7.1285 30 1 2.5293 -2.9273 4.8454 31 1 -0.3634 -1.0275 0.0123 32 1 -0.3634 0.5245 0.8838 33 1 -0.3633 0.5032 -0.8960 34 1 2.7166 -0.1222 -1.8111 35 1 1.2354 -1.1172 -1.8376 36 1 3.3514 -5.2877 -2.8771 37 1 0.7481 -1.7232 -4.9553 38 1 -0.1311 -4.0188 -6.5107 39 1 1.0803 -2.8784 -7.1327 40 1 1.0612 -5.1315 -8.2973 41 1 2.6376 -4.6800 -7.5961 42 1 0.5728 -6.3779 -6.1236 43 1 1.8946 -7.0719 -7.0963 44 1 2.4219 -6.8323 -4.6223 45 1 3.5682 -6.0099 -5.7045 46 1 3.4980 -2.4221 1.2452 47 1 4.1540 -0.8856 0.5926 48 1 3.3538 0.7866 1.9758 49 1 1.6799 0.8614 2.5760 50 1 2.8551 -1.5305 3.5115 51 1 4.3781 -0.4896 7.6300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106400210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:23 Heat of formation + Delta-G solvation = -16.944691 kcal Electronic energy + Delta-G solvation = -29863.136139 eV Core-core repulsion = 25954.010634 eV Total energy + Delta-G solvation = -3909.125505 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.08080 -40.88596 -39.19212 -37.75282 -36.62540 -34.27604 -33.86821 -33.30008 -32.32464 -31.06164 -30.43914 -27.67583 -27.24778 -25.42614 -24.97545 -24.26945 -23.69875 -22.62640 -21.45824 -21.20290 -20.18637 -19.61636 -18.53534 -17.68320 -17.12344 -16.93799 -16.58054 -16.52460 -16.07823 -15.87132 -15.60011 -15.43310 -15.12833 -14.85695 -14.76671 -14.70691 -14.43103 -14.12937 -14.05880 -13.79039 -13.65347 -13.54971 -13.41127 -13.20701 -12.99964 -12.92852 -12.81366 -12.54189 -12.14770 -11.93638 -11.84788 -11.77147 -11.75830 -11.63046 -11.51631 -11.46964 -11.35583 -11.00913 -10.50809 -10.32986 -10.01083 -9.69942 -9.31466 -8.05266 -5.37619 -0.44490 0.16447 1.34202 1.36764 1.42500 1.57483 1.75681 2.44413 2.74163 2.97386 3.26463 3.37343 3.52160 3.58958 3.61822 3.74901 3.79630 3.82890 3.90391 4.02534 4.03103 4.26891 4.32946 4.33531 4.41292 4.47113 4.51454 4.55828 4.61600 4.70326 4.72229 4.76154 4.80813 4.84329 4.90040 4.91456 5.01587 5.03467 5.06459 5.12607 5.19435 5.21014 5.25273 5.26861 5.34451 5.37834 5.45398 5.53701 5.67725 5.74291 6.19159 6.38284 6.63424 6.96542 7.05104 7.82033 7.99259 9.16126 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002318 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.442601 B =12078.074762 C =13114.214245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.102 0.898 4 C 0.111 3.889 5 N -0.601 5.601 6 C 0.574 3.426 7 O -0.583 6.583 8 C 0.054 3.946 9 C -0.121 4.121 10 C -0.046 4.046 11 C -0.098 4.098 12 C 0.097 3.903 13 N -0.462 5.462 14 C -0.079 4.079 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.086 4.086 18 C 0.109 3.891 19 C -0.096 4.096 20 H 0.073 0.927 21 C 0.169 3.831 22 N -0.761 5.761 23 C -0.229 4.229 24 H 0.064 0.936 25 C -0.061 4.061 26 N -0.980 5.980 27 Si 0.947 3.053 28 H -0.283 1.283 29 H -0.292 1.292 30 H -0.259 1.259 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.198 0.802 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.034 0.966 49 H 0.039 0.961 50 H 0.362 0.638 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.184 -8.642 -38.301 40.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.120 0.880 4 C -0.010 4.010 5 N -0.331 5.331 6 C 0.363 3.637 7 O -0.464 6.464 8 C -0.081 4.081 9 C -0.142 4.142 10 C -0.053 4.053 11 C -0.100 4.100 12 C -0.064 4.064 13 N -0.174 5.174 14 C -0.116 4.116 15 C -0.159 4.159 16 C -0.156 4.156 17 C -0.123 4.123 18 C -0.013 4.013 19 C -0.116 4.116 20 H 0.092 0.908 21 C 0.042 3.958 22 N -0.407 5.407 23 C -0.360 4.360 24 H 0.082 0.918 25 C -0.252 4.252 26 N -0.631 5.631 27 Si 0.775 3.225 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.184 1.184 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.214 0.786 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.195 0.805 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.889 -8.202 -37.449 39.853 hybrid contribution 0.816 -1.816 0.970 2.214 sum -10.074 -10.018 -36.478 39.147 Atomic orbital electron populations 1.21779 0.92698 1.01681 1.03010 1.22168 0.97573 0.99895 0.91716 0.88026 1.22669 0.96991 0.85473 0.95902 1.48712 1.52114 1.15164 1.17096 1.18077 0.79712 0.80605 0.85283 1.90756 1.43017 1.44472 1.68172 1.20612 1.00355 0.93006 0.94097 1.22144 0.99322 0.97219 0.95522 1.20167 0.95071 0.97544 0.92551 1.21190 0.96434 0.93465 0.98905 1.23550 0.96422 0.97420 0.89030 1.67640 1.08047 1.30126 1.11562 1.20585 1.00489 1.01319 0.89183 1.21603 1.01494 0.94031 0.98749 1.21589 0.99257 0.99049 0.95708 1.20591 1.01469 0.92157 0.98096 1.22466 0.97766 0.98831 0.82283 1.22392 0.96355 0.97403 0.95414 0.90842 1.20773 0.97356 0.93065 0.84556 1.42814 1.80744 1.04799 1.12302 1.19058 1.34049 0.92236 0.90642 0.91819 1.25407 1.02036 1.01957 0.95843 1.69861 1.52736 1.36116 1.04422 0.85533 0.78423 0.81704 0.76877 1.20960 1.21810 1.18373 0.93559 0.92380 0.89944 0.90674 0.86652 0.84796 0.78577 0.88438 0.88038 0.89219 0.91795 0.91454 0.89730 0.90023 0.89282 0.92533 0.90337 0.94801 0.94344 0.80533 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.90 71.98 0.64 -1.92 16 2 C -0.09 -2.11 3.17 -9.90 -0.03 -2.15 16 3 H 0.10 2.05 7.85 -2.38 -0.02 2.03 16 4 C 0.11 2.53 5.74 86.53 0.50 3.03 16 5 N -0.60 -18.31 3.29 -813.13 -2.68 -20.98 16 6 C 0.57 19.17 7.88 86.88 0.68 19.85 16 7 O -0.58 -23.74 16.54 -3.76 -0.06 -23.80 16 8 C 0.05 1.41 6.72 41.88 0.28 1.69 16 9 C -0.12 -2.73 9.26 22.68 0.21 -2.52 16 10 C -0.05 -0.71 5.74 -19.88 -0.11 -0.82 16 11 C -0.10 -1.15 5.75 -19.80 -0.11 -1.26 16 12 C 0.10 1.29 10.79 84.98 0.92 2.20 16 13 N -0.46 -9.51 6.73 -184.70 -1.24 -10.75 16 14 C -0.08 -0.36 5.71 29.71 0.17 -0.19 16 15 C -0.12 -0.50 5.97 30.63 0.18 -0.32 16 16 C -0.12 -0.71 5.98 30.64 0.18 -0.52 16 17 C -0.09 -0.89 5.71 29.68 0.17 -0.72 16 18 C 0.11 3.67 6.44 86.61 0.56 4.23 16 19 C -0.10 -2.96 2.60 -9.70 -0.03 -2.99 16 20 H 0.07 2.42 7.86 -2.39 -0.02 2.40 16 21 C 0.17 6.36 5.58 86.38 0.48 6.85 16 22 N -0.76 -36.89 5.33 -343.46 -1.83 -38.72 16 23 C -0.23 -13.39 10.47 84.03 0.88 -12.51 16 24 H 0.06 4.01 8.06 -2.91 -0.02 3.98 16 25 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 26 N -0.98 -64.32 13.97 21.65 0.30 -64.01 16 27 Si 0.95 48.28 27.74 68.60 1.90 50.18 16 28 H -0.28 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 30 H -0.26 -12.25 6.52 99.48 0.65 -11.60 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.16 8.14 -2.38 -0.02 1.15 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.12 2.41 5.41 -2.39 -0.01 2.39 16 36 H 0.13 3.24 7.64 -2.91 -0.02 3.21 16 37 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.10 0.14 8.13 -2.39 -0.02 0.12 16 40 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.06 0.34 8.10 -2.39 -0.02 0.32 16 42 H 0.07 0.43 8.10 -2.38 -0.02 0.41 16 43 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.06 2.20 7.85 -2.39 -0.02 2.18 16 47 H 0.08 2.62 7.95 -2.39 -0.02 2.60 16 48 H 0.03 1.28 8.00 -2.39 -0.02 1.26 16 49 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.36 17.37 5.53 -92.70 -0.51 16.86 16 51 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -78.91 400.51 2.78 -76.13 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.35 Total: 23.27 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 6.04 Total: 8.69 kcal Atomic # 7 Polarization: -129.02 SS G_CDS: -5.45 Total: -134.46 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.06 Total: -23.80 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.90 Total: 50.18 kcal Total: -78.91 2.78 -76.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106400210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.184 kcal (2) G-P(sol) polarization free energy of solvation -78.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds