Wall clock time and date at job start Wed Apr 1 2020 03:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46801 * 2 1 4 4 C 1.53002 * 109.46781 * 119.99655 * 2 1 3 5 5 H 1.08997 * 109.47090 * 184.99950 * 4 2 1 6 6 F 1.39898 * 109.47336 * 305.00400 * 4 2 1 7 7 C 1.50704 * 109.46802 * 64.99963 * 4 2 1 8 8 O 1.21275 * 120.00263 * 315.00322 * 7 4 2 9 9 N 1.34784 * 119.99481 * 134.99566 * 7 4 2 10 10 C 1.47027 * 125.64406 * 179.97438 * 9 7 4 11 11 C 1.54321 * 107.26617 * 178.90815 * 10 9 7 12 12 H 1.09005 * 110.72064 * 96.35188 * 11 10 9 13 13 C 1.53006 * 110.71843 * 219.44610 * 11 10 9 14 14 N 1.46901 * 109.47014 * 293.54624 * 13 11 10 15 15 C 1.46902 * 110.99983 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.46978 * 180.02562 * 15 14 13 17 17 O 1.21295 * 120.00238 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00076 * 180.02562 * 16 15 14 19 19 C 1.37105 * 120.00244 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99708 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00017 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99901 * 359.71836 * 21 19 18 23 23 Si 1.86800 * 120.00194 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72227 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72075 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72111 * 23 21 19 27 27 C 1.55151 * 102.94663 * 337.80988 * 11 10 9 28 28 H 1.09005 * 111.00606 * 277.42945 * 27 11 10 29 29 C 1.53003 * 111.00683 * 153.57675 * 27 11 10 30 30 C 1.47421 * 125.64984 * 359.96412 * 9 7 4 31 31 H 1.08997 * 109.47166 * 300.00462 * 1 2 3 32 32 H 1.09006 * 109.46597 * 59.99996 * 1 2 3 33 33 H 1.08995 * 109.46857 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47166 * 239.99538 * 2 1 3 35 35 H 1.09004 * 109.46461 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47220 * 299.99584 * 3 2 1 37 37 H 1.09001 * 109.47014 * 60.00207 * 3 2 1 38 38 H 1.09002 * 109.87786 * 59.49172 * 10 9 7 39 39 H 1.08992 * 109.88437 * 298.32885 * 10 9 7 40 40 H 1.09002 * 109.47001 * 173.54915 * 13 11 10 41 41 H 1.08992 * 109.47083 * 53.54606 * 13 11 10 42 42 H 1.00903 * 110.99970 * 303.95843 * 14 13 11 43 43 H 1.08999 * 109.46697 * 60.00741 * 15 14 13 44 44 H 1.08993 * 109.47253 * 300.00391 * 15 14 13 45 45 H 0.97004 * 119.99652 * 359.97438 * 18 16 15 46 46 H 0.97000 * 120.00371 * 0.28325 * 22 21 19 47 47 H 1.08998 * 109.46842 * 59.99987 * 29 27 11 48 48 H 1.09002 * 109.46908 * 180.02562 * 29 27 11 49 49 H 1.08998 * 109.46552 * 300.00190 * 29 27 11 50 50 H 1.08998 * 110.36629 * 322.99596 * 30 9 7 51 51 H 1.08996 * 110.36962 * 85.32103 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2953 6 9 1.4821 -0.1314 2.3887 7 6 1.6412 -2.1733 1.1890 8 8 0.5142 -2.4796 0.8621 9 7 2.5373 -3.1315 1.4981 10 6 2.2832 -4.5796 1.4817 11 6 3.6000 -5.2802 1.8774 12 1 3.6054 -5.5188 2.9410 13 6 3.8140 -6.5429 1.0402 14 7 2.7826 -7.5336 1.3759 15 6 2.9565 -8.7619 0.5891 16 6 1.8825 -9.7520 0.9595 17 8 1.0539 -9.4630 1.7969 18 7 1.8431 -10.9589 0.3610 19 6 0.8657 -11.8595 0.6976 20 1 0.1275 -11.6019 1.4426 21 6 0.8249 -13.1036 0.0802 22 7 1.7198 -13.4149 -0.8303 23 14 -0.5064 -14.3309 0.5393 24 1 -0.0289 -15.1842 1.6569 25 1 -1.7287 -13.6007 0.9613 26 1 -0.8201 -15.1835 -0.6354 27 6 4.6754 -4.2124 1.5449 28 1 4.9339 -4.2347 0.4862 29 6 5.9200 -4.3980 2.4152 30 6 3.9344 -2.9013 1.9085 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.9830 -4.8919 0.4814 39 1 1.5013 -4.8269 2.1997 40 1 4.7992 -6.9576 1.2536 41 1 3.7466 -6.2927 -0.0184 42 1 2.7821 -7.7342 2.3648 43 1 3.9357 -9.1922 0.7990 44 1 2.8829 -8.5268 -0.4726 45 1 2.5060 -11.1901 -0.3084 46 1 2.4114 -12.7778 -1.0685 47 1 6.3430 -5.3869 2.2380 48 1 6.6574 -3.6363 2.1618 49 1 5.6461 -4.3029 3.4659 50 1 4.3578 -2.0611 1.3581 51 1 3.9895 -2.7193 2.9817 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106548758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:19 Heat of formation + Delta-G solvation = -153.334943 kcal Electronic energy + Delta-G solvation = -30296.436027 eV Core-core repulsion = 25950.626972 eV Total energy + Delta-G solvation = -4345.809055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.02500 -41.34685 -40.34265 -39.33320 -36.89852 -36.27455 -36.12588 -34.06529 -33.15413 -31.72415 -29.58822 -28.08660 -28.00678 -27.29873 -26.31619 -24.98499 -22.72875 -21.85011 -21.59136 -21.02373 -20.46109 -19.98642 -18.75976 -18.24237 -18.10101 -17.14147 -17.02173 -16.83252 -16.68367 -16.33222 -15.68987 -15.58451 -15.53669 -15.31383 -14.95150 -14.79957 -14.51646 -14.35884 -14.14747 -14.02908 -13.82571 -13.74145 -13.39207 -13.36295 -13.23461 -13.04955 -12.93680 -12.90450 -12.72603 -12.46363 -12.20904 -11.98680 -11.96115 -11.91096 -11.90796 -11.71075 -11.66441 -11.53966 -11.46350 -10.62142 -10.43229 -10.12330 -9.83364 -9.37136 -8.94599 -6.08455 1.22914 1.50308 1.53631 1.67928 1.80954 1.99396 2.38504 2.76592 3.09251 3.14752 3.30968 3.36433 3.45370 3.54511 3.63722 3.73251 3.82187 4.10708 4.16020 4.20747 4.30810 4.32737 4.37170 4.40884 4.46263 4.48447 4.51651 4.58368 4.65242 4.70938 4.75698 4.85655 4.88636 4.94170 4.98561 5.03918 5.06038 5.11588 5.15978 5.32306 5.34665 5.44241 5.49841 5.57543 5.91522 5.97648 6.29243 6.33801 6.56599 6.73089 6.87697 7.42575 7.91382 8.53334 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.001913 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.051518 B =14630.332976 C =15724.564336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C -0.143 4.143 4 C 0.092 3.908 5 H 0.140 0.860 6 F -0.200 7.200 7 C 0.493 3.507 8 O -0.561 6.561 9 N -0.611 5.611 10 C 0.121 3.879 11 C -0.084 4.084 12 H 0.089 0.911 13 C 0.073 3.927 14 N -0.689 5.689 15 C 0.068 3.932 16 C 0.439 3.561 17 O -0.620 6.620 18 N -0.587 5.587 19 C -0.411 4.411 20 H 0.071 0.929 21 C -0.042 4.042 22 N -0.916 5.916 23 Si 1.135 2.865 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.272 1.272 27 C -0.086 4.086 28 H 0.099 0.901 29 C -0.138 4.138 30 C 0.090 3.910 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.345 0.655 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.385 0.615 46 H 0.260 0.740 47 H 0.062 0.938 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.111 0.889 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.110 28.629 1.781 32.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.129 4.129 3 C -0.200 4.200 4 C 0.053 3.947 5 H 0.157 0.843 6 F -0.181 7.181 7 C 0.280 3.720 8 O -0.440 6.440 9 N -0.344 5.344 10 C -0.002 4.002 11 C -0.103 4.103 12 H 0.107 0.893 13 C -0.055 4.055 14 N -0.322 5.322 15 C -0.065 4.065 16 C 0.227 3.773 17 O -0.505 6.505 18 N -0.226 5.226 19 C -0.540 4.540 20 H 0.089 0.911 21 C -0.241 4.241 22 N -0.555 5.555 23 Si 0.955 3.045 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.197 1.197 27 C -0.106 4.106 28 H 0.117 0.883 29 C -0.196 4.196 30 C -0.031 4.031 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.163 0.837 43 H 0.091 0.909 44 H 0.121 0.879 45 H 0.220 0.780 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.079 0.921 50 H 0.129 0.871 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.845 27.475 1.433 30.363 hybrid contribution 0.936 0.647 0.540 1.260 sum 13.781 28.123 1.973 31.380 Atomic orbital electron populations 1.22075 0.95063 1.03357 1.01832 1.21622 0.97204 0.98428 0.95683 1.21830 1.02244 0.92926 1.03001 1.21857 1.01197 0.86910 0.84707 0.84283 1.92842 1.88055 1.84427 1.52726 1.21366 0.84503 0.88762 0.77367 1.90662 1.21591 1.83476 1.48266 1.48777 1.13633 1.06456 1.65543 1.21837 0.98415 0.79006 1.00915 1.22263 0.93091 0.94227 1.00726 0.89260 1.22034 0.92776 0.90620 1.00091 1.60046 1.50900 1.10417 1.10841 1.21512 0.95333 0.89463 1.00149 1.20982 0.88751 0.83274 0.84284 1.90508 1.44145 1.78527 1.37367 1.41998 1.28598 1.13922 1.38091 1.20533 1.10130 0.98035 1.25306 0.91132 1.27813 1.03453 0.98908 0.93881 1.70941 1.15797 1.38106 1.30661 0.82596 0.72004 0.73147 0.76731 1.19369 1.20600 1.19659 1.22386 0.94392 0.91579 1.02215 0.88301 1.21711 0.95672 1.03055 0.99136 1.22908 0.78550 0.99911 1.01699 0.93324 0.91408 0.91959 0.88590 0.90144 0.90870 0.92550 0.92693 0.94011 0.92344 0.90417 0.83651 0.90933 0.87924 0.78044 0.92911 0.91852 0.90239 0.92105 0.87119 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 8.71 71.98 0.63 -2.79 16 2 C -0.11 -1.64 2.75 -10.79 -0.03 -1.67 16 3 C -0.14 -1.34 9.11 71.98 0.66 -0.68 16 4 C 0.09 1.49 3.23 29.85 0.10 1.58 16 5 H 0.14 1.04 6.11 -2.39 -0.01 1.02 16 6 F -0.20 -4.16 16.03 44.97 0.72 -3.44 16 7 C 0.49 11.86 7.19 87.66 0.63 12.49 16 8 O -0.56 -19.03 14.12 -3.02 -0.04 -19.07 16 9 N -0.61 -12.19 3.33 -811.76 -2.70 -14.89 16 10 C 0.12 2.95 6.28 86.73 0.54 3.50 16 11 C -0.08 -1.41 2.60 -9.61 -0.03 -1.43 16 12 H 0.09 1.51 8.04 -2.38 -0.02 1.50 16 13 C 0.07 1.42 5.00 86.31 0.43 1.85 16 14 N -0.69 -20.58 5.93 -517.94 -3.07 -23.65 16 15 C 0.07 2.22 6.17 85.56 0.53 2.75 16 16 C 0.44 21.03 7.82 87.66 0.69 21.72 16 17 O -0.62 -35.28 15.78 -3.08 -0.05 -35.33 16 18 N -0.59 -30.10 5.28 -306.98 -1.62 -31.73 16 19 C -0.41 -23.89 9.68 84.04 0.81 -23.08 16 20 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 21 C -0.04 -2.33 5.50 84.92 0.47 -1.86 16 22 N -0.92 -51.34 13.68 21.66 0.30 -51.04 16 23 Si 1.14 49.40 29.92 68.60 2.05 51.45 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 27 C -0.09 -0.80 3.09 -9.40 -0.03 -0.83 16 28 H 0.10 0.81 8.05 -2.38 -0.02 0.79 16 29 C -0.14 -0.81 9.31 71.98 0.67 -0.14 16 30 C 0.09 0.89 6.03 86.86 0.52 1.41 16 31 H 0.05 1.04 7.68 -2.39 -0.02 1.03 16 32 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 1.72 5.25 -2.39 -0.01 1.71 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.62 7.94 -2.39 -0.02 0.60 16 38 H 0.05 1.58 7.77 -2.39 -0.02 1.57 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.47 8.06 -2.39 -0.02 1.45 16 42 H 0.34 10.87 8.43 -89.69 -0.76 10.11 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.39 17.96 6.73 -92.71 -0.62 17.33 16 46 H 0.26 14.03 6.78 -92.71 -0.63 13.40 16 47 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.06 0.38 8.07 -2.39 -0.02 0.36 16 50 H 0.11 0.40 6.73 -2.39 -0.02 0.38 16 51 H 0.09 0.73 7.98 -2.39 -0.02 0.71 16 Total: -1.00 -81.41 410.07 1.87 -79.54 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.30 Total: 35.35 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 6.59 Total: 12.81 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -7.10 Total: -121.31 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -0.09 Total: -54.40 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.72 Total: -3.44 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.45 kcal Total: -81.41 1.87 -79.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106548758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.798 kcal (2) G-P(sol) polarization free energy of solvation -81.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds