Wall clock time and date at job start Wed Apr 1 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46902 * 2 1 4 4 H 1.08999 * 109.47450 * 305.00005 * 3 2 1 5 5 F 1.39905 * 109.47214 * 65.00054 * 3 2 1 6 6 C 1.50702 * 109.47029 * 184.99748 * 3 2 1 7 7 O 1.21272 * 120.00534 * 315.00388 * 6 3 2 8 8 N 1.34781 * 119.99361 * 134.99844 * 6 3 2 9 9 C 1.46500 * 119.99726 * 180.02562 * 8 6 3 10 10 C 1.53001 * 109.47536 * 174.35964 * 9 8 6 11 11 N 1.46908 * 109.46736 * 305.31952 * 10 9 8 12 12 C 1.46900 * 110.99506 * 305.20666 * 11 10 9 13 13 C 1.50703 * 109.46680 * 185.17450 * 12 11 10 14 14 O 1.21297 * 120.00048 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00269 * 179.97438 * 13 12 11 16 16 C 1.37092 * 119.99868 * 179.97438 * 15 13 12 17 17 H 1.07993 * 120.00756 * 0.02562 * 16 15 13 18 18 C 1.38959 * 119.99459 * 179.97438 * 16 15 13 19 19 N 1.31412 * 119.99500 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00202 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47233 * 89.99585 * 20 18 16 22 22 H 1.48497 * 109.47488 * 209.99515 * 20 18 16 23 23 H 1.48504 * 109.47196 * 329.99717 * 20 18 16 24 24 C 1.52995 * 109.47454 * 185.32018 * 10 9 8 25 25 C 1.52999 * 109.47091 * 179.97438 * 24 10 9 26 26 C 1.53004 * 109.47157 * 59.99989 * 25 24 10 27 27 C 1.53003 * 109.46594 * 299.99754 * 26 25 24 28 28 C 1.52998 * 109.46711 * 65.31473 * 10 9 8 29 29 H 1.09000 * 109.47732 * 59.99877 * 1 2 3 30 30 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47379 * 299.99522 * 1 2 3 32 32 H 1.08999 * 109.47379 * 240.00478 * 2 1 3 33 33 H 1.09002 * 109.47099 * 119.99722 * 2 1 3 34 34 H 0.96994 * 120.00212 * 0.02562 * 8 6 3 35 35 H 1.09003 * 109.47567 * 294.35973 * 9 8 6 36 36 H 1.09008 * 109.47117 * 54.35713 * 9 8 6 37 37 H 1.00894 * 111.00052 * 69.15897 * 11 10 9 38 38 H 1.08996 * 109.47404 * 305.16978 * 12 11 10 39 39 H 1.08992 * 109.47462 * 65.18114 * 12 11 10 40 40 H 0.97000 * 119.99839 * 0.02562 * 15 13 12 41 41 H 0.97001 * 119.99847 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.47043 * 300.00016 * 24 10 9 43 43 H 1.08996 * 109.47450 * 59.99432 * 24 10 9 44 44 H 1.08992 * 109.47299 * 299.99804 * 25 24 10 45 45 H 1.09006 * 109.46975 * 179.97438 * 25 24 10 46 46 H 1.08993 * 109.46858 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.47308 * 59.99469 * 26 25 24 48 48 H 1.08992 * 109.47346 * 299.99869 * 27 26 25 49 49 H 1.09001 * 109.46947 * 179.97438 * 27 26 25 50 50 H 1.08996 * 109.47477 * 300.00333 * 28 10 9 51 51 H 1.08997 * 109.47212 * 60.01083 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 9 1.6698 2.0680 1.1955 6 6 3.5418 1.4444 -0.1238 7 8 4.2063 0.6812 0.5446 8 7 4.1465 2.2942 -0.9774 9 6 5.6065 2.2957 -1.0982 10 6 6.0242 3.2432 -2.2246 11 7 5.3284 2.8684 -3.4630 12 6 5.5614 1.4555 -3.7907 13 6 4.9405 1.1410 -5.1274 14 8 4.3613 2.0086 -5.7463 15 7 5.0296 -0.1041 -5.6356 16 6 4.4643 -0.3903 -6.8513 17 1 3.9479 0.3820 -7.4020 18 6 4.5567 -1.6739 -7.3755 19 7 4.0153 -1.9481 -8.5411 20 14 5.4505 -3.0095 -6.4235 21 1 4.4902 -3.7100 -5.5334 22 1 6.0440 -3.9829 -7.3749 23 1 6.5280 -2.3974 -5.6051 24 6 7.5358 3.1452 -2.4393 25 6 7.9534 4.0922 -3.5661 26 6 7.5839 5.5282 -3.1886 27 6 6.0722 5.6261 -2.9739 28 6 5.6547 4.6789 -1.8465 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6150 2.9048 -1.5118 35 1 6.0485 2.6300 -0.1596 36 1 5.9534 1.2873 -1.3243 37 1 4.3412 3.0663 -3.3971 38 1 6.6337 1.2647 -3.8343 39 1 5.1111 0.8255 -3.0237 40 1 5.4931 -0.7979 -5.1409 41 1 4.0794 -2.8442 -8.9069 42 1 8.0521 3.4232 -1.5204 43 1 7.7991 2.1223 -2.7086 44 1 7.4372 3.8138 -4.4847 45 1 9.0304 4.0227 -3.7188 46 1 7.8810 6.2028 -3.9915 47 1 8.1001 5.8067 -2.2698 48 1 5.5560 5.3477 -3.8926 49 1 5.8090 6.6490 -2.7046 50 1 4.5778 4.7487 -1.6935 51 1 6.1710 4.9570 -0.9277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115668670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:50 Heat of formation + Delta-G solvation = -135.619884 kcal Electronic energy + Delta-G solvation = -31966.720655 eV Core-core repulsion = 27621.679783 eV Total energy + Delta-G solvation = -4345.040873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.14445 -40.60835 -39.21959 -38.13695 -35.41017 -34.23952 -34.14196 -33.48103 -31.69415 -30.92897 -30.46116 -28.31442 -26.61971 -25.69473 -23.98945 -22.86625 -22.27717 -20.97779 -20.77316 -19.41116 -19.02684 -18.39252 -18.16900 -17.18125 -16.44651 -16.17919 -15.65396 -15.59144 -15.38726 -15.10374 -14.84419 -14.66037 -14.32092 -14.13224 -13.95697 -13.88923 -13.60136 -13.24696 -13.16292 -12.97146 -12.63016 -12.56877 -12.33121 -12.25254 -12.23679 -12.16648 -11.85995 -11.72957 -11.57105 -11.36218 -11.19531 -11.17081 -11.04392 -10.62133 -10.54159 -10.32106 -10.05946 -10.00752 -9.99160 -9.59787 -9.42786 -8.66402 -8.22905 -8.18091 -6.34233 -3.85600 2.15265 2.64956 3.00576 3.04706 3.13353 3.70458 3.92324 4.07675 4.10754 4.20733 4.33647 4.43291 4.44769 4.61250 4.69539 4.83709 5.05204 5.07813 5.09221 5.16124 5.17690 5.23145 5.36754 5.37788 5.39216 5.45511 5.49947 5.52161 5.59389 5.68717 5.69531 5.79717 5.80011 5.84487 5.85877 5.94289 5.95010 6.00485 6.17203 6.21581 6.23854 6.35265 6.59434 6.97846 7.03642 7.41570 7.54828 7.76777 8.11165 8.56479 8.91963 9.39488 9.79497 10.78818 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.006780 B = 0.004424 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4128.553815 B = 6328.221304 C = 9332.805540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.142 4.142 3 C 0.083 3.917 4 H 0.102 0.898 5 F -0.191 7.191 6 C 0.494 3.506 7 O -0.520 6.520 8 N -0.718 5.718 9 C 0.084 3.916 10 C 0.106 3.894 11 N -0.642 5.642 12 C 0.041 3.959 13 C 0.451 3.549 14 O -0.563 6.563 15 N -0.591 5.591 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.043 3.957 19 N -0.881 5.881 20 Si 0.877 3.123 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.270 1.270 24 C -0.101 4.101 25 C -0.113 4.113 26 C -0.113 4.113 27 C -0.114 4.114 28 C -0.104 4.104 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.344 0.656 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.082 0.918 49 H 0.053 0.947 50 H 0.058 0.942 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 9.817 18.017 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.043 3.957 4 H 0.119 0.881 5 F -0.172 7.172 6 C 0.277 3.723 7 O -0.395 6.395 8 N -0.372 5.372 9 C -0.041 4.041 10 C 0.014 3.986 11 N -0.274 5.274 12 C -0.091 4.091 13 C 0.237 3.763 14 O -0.445 6.445 15 N -0.230 5.230 16 C -0.433 4.433 17 H 0.137 0.863 18 C -0.160 4.160 19 N -0.521 5.521 20 Si 0.704 3.296 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.195 1.195 24 C -0.139 4.139 25 C -0.150 4.150 26 C -0.151 4.151 27 C -0.151 4.151 28 C -0.142 4.142 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.164 0.836 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.202 0.798 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.334 9.941 17.506 20.267 hybrid contribution -0.077 -1.426 1.094 1.799 sum 2.257 8.515 18.600 20.581 Atomic orbital electron populations 1.21771 0.93954 1.02842 1.02511 1.21999 0.97515 0.93258 1.05196 1.21649 0.91777 0.96677 0.85572 0.88054 1.92878 1.92049 1.83922 1.48319 1.20979 0.90435 0.80686 0.80175 1.90733 1.66147 1.38939 1.43633 1.46054 1.08402 1.39522 1.43185 1.22266 0.79579 1.01862 1.00385 1.21294 0.95992 0.94182 0.87169 1.60208 1.16364 1.19011 1.31866 1.21815 1.01794 0.89370 0.96153 1.19670 0.85626 0.83190 0.87840 1.90565 1.46140 1.46098 1.61702 1.42218 1.51230 1.09478 1.20088 1.19412 1.32002 0.97695 0.94227 0.86277 1.25026 0.97601 0.97334 0.96074 1.69619 1.43924 1.21577 1.16941 0.86709 0.80139 0.82561 0.80210 1.19654 1.20123 1.19511 1.21504 0.92557 1.00506 0.99375 1.21416 0.99927 0.94114 0.99570 1.21461 0.96061 0.96996 1.00568 1.21454 0.96395 0.97684 0.99613 1.21580 1.00562 0.93174 0.98876 0.92067 0.91572 0.92047 0.89468 0.89521 0.76285 0.91027 0.90458 0.83603 0.89168 0.93662 0.79790 0.91602 0.91732 0.91649 0.89781 0.92763 0.92325 0.92955 0.89931 0.92807 0.92333 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.83 37.15 0.37 -0.90 16 2 C -0.14 -1.39 5.41 -26.73 -0.14 -1.54 16 3 C 0.08 0.83 3.77 -27.88 -0.11 0.72 16 4 H 0.10 0.75 7.99 -51.93 -0.42 0.34 16 5 F -0.19 -2.19 16.75 2.25 0.04 -2.15 16 6 C 0.49 5.93 7.17 -10.98 -0.08 5.85 16 7 O -0.52 -8.11 16.60 5.56 0.09 -8.02 16 8 N -0.72 -7.18 5.04 -60.29 -0.30 -7.48 16 9 C 0.08 0.87 3.87 -4.04 -0.02 0.86 16 10 C 0.11 1.04 0.30 -131.60 -0.04 1.01 16 11 N -0.64 -8.21 4.01 -101.22 -0.41 -8.61 16 12 C 0.04 0.62 5.28 -4.97 -0.03 0.60 16 13 C 0.45 9.62 7.83 -10.98 -0.09 9.54 16 14 O -0.56 -14.18 15.89 5.54 0.09 -14.09 16 15 N -0.59 -13.62 5.09 -10.96 -0.06 -13.68 16 16 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 17 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 18 C 0.04 1.15 5.50 -17.46 -0.10 1.06 16 19 N -0.88 -25.39 13.96 55.50 0.77 -24.62 16 20 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 24 C -0.10 -0.99 4.51 -26.73 -0.12 -1.12 16 25 C -0.11 -1.20 5.77 -26.73 -0.15 -1.35 16 26 C -0.11 -1.07 5.92 -26.73 -0.16 -1.23 16 27 C -0.11 -1.09 5.77 -26.70 -0.15 -1.24 16 28 C -0.10 -0.90 4.68 -26.70 -0.12 -1.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 7.94 -51.93 -0.41 0.09 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.93 8.05 -51.93 -0.42 0.52 16 34 H 0.40 3.31 6.29 -40.82 -0.26 3.05 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.91 6.76 -51.92 -0.35 0.56 16 37 H 0.34 4.42 7.28 -39.30 -0.29 4.14 16 38 H 0.09 1.27 6.22 -51.93 -0.32 0.95 16 39 H 0.05 0.64 6.60 -51.93 -0.34 0.30 16 40 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.68 6.42 -51.93 -0.33 0.34 16 44 H 0.08 1.13 7.60 -51.93 -0.39 0.74 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.97 7.60 -51.93 -0.39 0.58 16 49 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.47 7.09 -51.93 -0.37 0.10 16 51 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -32.92 400.27 -7.86 -40.78 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -8.31 Total: 14.65 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -1.09 Total: 2.66 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.01 Total: -54.39 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.18 Total: -22.11 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.92 -7.86 -40.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115668670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.842 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds