Wall clock time and date at job start Wed Apr 1 2020 02:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46902 * 2 1 4 4 H 1.08999 * 109.47450 * 305.00005 * 3 2 1 5 5 F 1.39905 * 109.47214 * 65.00054 * 3 2 1 6 6 C 1.50702 * 109.47029 * 184.99748 * 3 2 1 7 7 O 1.21272 * 120.00534 * 315.00388 * 6 3 2 8 8 N 1.34781 * 119.99361 * 134.99844 * 6 3 2 9 9 C 1.46500 * 119.99726 * 180.02562 * 8 6 3 10 10 C 1.53001 * 109.47536 * 174.35964 * 9 8 6 11 11 N 1.46908 * 109.46736 * 305.31952 * 10 9 8 12 12 C 1.46900 * 110.99506 * 305.20666 * 11 10 9 13 13 C 1.50703 * 109.46680 * 185.17450 * 12 11 10 14 14 O 1.21297 * 120.00048 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00269 * 179.97438 * 13 12 11 16 16 C 1.37092 * 119.99868 * 179.97438 * 15 13 12 17 17 H 1.07993 * 120.00756 * 0.02562 * 16 15 13 18 18 C 1.38959 * 119.99459 * 179.97438 * 16 15 13 19 19 N 1.31412 * 119.99500 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00202 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47233 * 89.99585 * 20 18 16 22 22 H 1.48497 * 109.47488 * 209.99515 * 20 18 16 23 23 H 1.48504 * 109.47196 * 329.99717 * 20 18 16 24 24 C 1.52995 * 109.47454 * 185.32018 * 10 9 8 25 25 C 1.52999 * 109.47091 * 179.97438 * 24 10 9 26 26 C 1.53004 * 109.47157 * 59.99989 * 25 24 10 27 27 C 1.53003 * 109.46594 * 299.99754 * 26 25 24 28 28 C 1.52998 * 109.46711 * 65.31473 * 10 9 8 29 29 H 1.09000 * 109.47732 * 59.99877 * 1 2 3 30 30 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47379 * 299.99522 * 1 2 3 32 32 H 1.08999 * 109.47379 * 240.00478 * 2 1 3 33 33 H 1.09002 * 109.47099 * 119.99722 * 2 1 3 34 34 H 0.96994 * 120.00212 * 0.02562 * 8 6 3 35 35 H 1.09003 * 109.47567 * 294.35973 * 9 8 6 36 36 H 1.09008 * 109.47117 * 54.35713 * 9 8 6 37 37 H 1.00894 * 111.00052 * 69.15897 * 11 10 9 38 38 H 1.08996 * 109.47404 * 305.16978 * 12 11 10 39 39 H 1.08992 * 109.47462 * 65.18114 * 12 11 10 40 40 H 0.97000 * 119.99839 * 0.02562 * 15 13 12 41 41 H 0.97001 * 119.99847 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.47043 * 300.00016 * 24 10 9 43 43 H 1.08996 * 109.47450 * 59.99432 * 24 10 9 44 44 H 1.08992 * 109.47299 * 299.99804 * 25 24 10 45 45 H 1.09006 * 109.46975 * 179.97438 * 25 24 10 46 46 H 1.08993 * 109.46858 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.47308 * 59.99469 * 26 25 24 48 48 H 1.08992 * 109.47346 * 299.99869 * 27 26 25 49 49 H 1.09001 * 109.46947 * 179.97438 * 27 26 25 50 50 H 1.08996 * 109.47477 * 300.00333 * 28 10 9 51 51 H 1.08997 * 109.47212 * 60.01083 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 9 1.6698 2.0680 1.1955 6 6 3.5418 1.4444 -0.1238 7 8 4.2063 0.6812 0.5446 8 7 4.1465 2.2942 -0.9774 9 6 5.6065 2.2957 -1.0982 10 6 6.0242 3.2432 -2.2246 11 7 5.3284 2.8684 -3.4630 12 6 5.5614 1.4555 -3.7907 13 6 4.9405 1.1410 -5.1274 14 8 4.3613 2.0086 -5.7463 15 7 5.0296 -0.1041 -5.6356 16 6 4.4643 -0.3903 -6.8513 17 1 3.9479 0.3820 -7.4020 18 6 4.5567 -1.6739 -7.3755 19 7 4.0153 -1.9481 -8.5411 20 14 5.4505 -3.0095 -6.4235 21 1 4.4902 -3.7100 -5.5334 22 1 6.0440 -3.9829 -7.3749 23 1 6.5280 -2.3974 -5.6051 24 6 7.5358 3.1452 -2.4393 25 6 7.9534 4.0922 -3.5661 26 6 7.5839 5.5282 -3.1886 27 6 6.0722 5.6261 -2.9739 28 6 5.6547 4.6789 -1.8465 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6150 2.9048 -1.5118 35 1 6.0485 2.6300 -0.1596 36 1 5.9534 1.2873 -1.3243 37 1 4.3412 3.0663 -3.3971 38 1 6.6337 1.2647 -3.8343 39 1 5.1111 0.8255 -3.0237 40 1 5.4931 -0.7979 -5.1409 41 1 4.0794 -2.8442 -8.9069 42 1 8.0521 3.4232 -1.5204 43 1 7.7991 2.1223 -2.7086 44 1 7.4372 3.8138 -4.4847 45 1 9.0304 4.0227 -3.7188 46 1 7.8810 6.2028 -3.9915 47 1 8.1001 5.8067 -2.2698 48 1 5.5560 5.3477 -3.8926 49 1 5.8090 6.6490 -2.7046 50 1 4.5778 4.7487 -1.6935 51 1 6.1710 4.9570 -0.9277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115668670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:48 Heat of formation + Delta-G solvation = -159.315231 kcal Electronic energy + Delta-G solvation = -31967.748163 eV Core-core repulsion = 27621.679783 eV Total energy + Delta-G solvation = -4346.068380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.98633 -41.54736 -40.33575 -39.70120 -36.33719 -35.97957 -35.01554 -34.61900 -33.71600 -31.73918 -31.42350 -29.13043 -28.10898 -26.50162 -25.63867 -23.70688 -23.05531 -21.81631 -21.65125 -21.22615 -20.26215 -19.89001 -19.02996 -18.01787 -17.83716 -17.16739 -17.02656 -16.61827 -16.41926 -16.23624 -16.05015 -15.81383 -15.43877 -15.10288 -15.01622 -14.89349 -14.79515 -14.54026 -14.26600 -14.09429 -14.00008 -13.87946 -13.35504 -13.23485 -13.15274 -12.97677 -12.94124 -12.72343 -12.65698 -12.58569 -12.41950 -12.08114 -12.00067 -11.90980 -11.84204 -11.50984 -11.34677 -11.13679 -10.90862 -10.82358 -10.42707 -10.29807 -10.23563 -9.31101 -8.41202 -6.00849 1.22970 1.28723 1.32714 1.41371 1.80920 1.97033 2.21075 2.68298 3.15627 3.28437 3.35878 3.45209 3.60338 3.63603 3.71312 3.84726 3.91887 4.11950 4.27698 4.32339 4.34431 4.35698 4.44773 4.45614 4.49502 4.60420 4.63287 4.67219 4.70371 4.77315 4.80775 4.99996 5.00421 5.07428 5.08356 5.15666 5.17335 5.28937 5.40477 5.42697 5.47472 5.50777 5.53273 5.75809 5.91948 6.04221 6.19091 6.39544 6.60034 6.89340 6.89687 7.41060 7.97156 8.76290 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.006780 B = 0.004424 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4128.553815 B = 6328.221304 C = 9332.805540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.083 3.917 4 H 0.131 0.869 5 F -0.199 7.199 6 C 0.491 3.509 7 O -0.559 6.559 8 N -0.708 5.708 9 C 0.088 3.912 10 C 0.115 3.885 11 N -0.651 5.651 12 C 0.060 3.940 13 C 0.454 3.546 14 O -0.605 6.605 15 N -0.595 5.595 16 C -0.323 4.323 17 H 0.059 0.941 18 C -0.011 4.011 19 N -0.933 5.933 20 Si 0.956 3.044 21 H -0.259 1.259 22 H -0.275 1.275 23 H -0.236 1.236 24 C -0.102 4.102 25 C -0.111 4.111 26 C -0.112 4.112 27 C -0.112 4.112 28 C -0.101 4.101 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.411 0.589 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.343 0.657 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.386 0.614 41 H 0.278 0.722 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.054 0.946 49 H 0.066 0.934 50 H 0.067 0.933 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 9.853 20.878 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C 0.044 3.956 4 H 0.149 0.851 5 F -0.180 7.180 6 C 0.276 3.724 7 O -0.437 6.437 8 N -0.361 5.361 9 C -0.038 4.038 10 C 0.023 3.977 11 N -0.284 5.284 12 C -0.072 4.072 13 C 0.242 3.758 14 O -0.489 6.489 15 N -0.236 5.236 16 C -0.452 4.452 17 H 0.077 0.923 18 C -0.210 4.210 19 N -0.574 5.574 20 Si 0.777 3.223 21 H -0.183 1.183 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.140 4.140 25 C -0.149 4.149 26 C -0.149 4.149 27 C -0.150 4.150 28 C -0.138 4.138 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.249 0.751 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.126 0.874 39 H 0.082 0.918 40 H 0.221 0.779 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.086 0.914 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.701 10.024 20.377 23.009 hybrid contribution -0.537 -1.269 0.138 1.385 sum 3.165 8.755 20.516 22.529 Atomic orbital electron populations 1.21763 0.92726 1.03363 1.02940 1.21993 0.98555 0.93099 1.04378 1.21789 0.90613 0.97139 0.86096 0.85132 1.92861 1.92000 1.84050 1.49059 1.21330 0.91170 0.80193 0.79732 1.90715 1.67108 1.40610 1.45299 1.46015 1.08553 1.38981 1.42525 1.22238 0.79600 1.01249 1.00682 1.21311 0.95835 0.94936 0.85571 1.60181 1.16689 1.17428 1.34059 1.21625 1.02155 0.91177 0.92262 1.20862 0.83759 0.81907 0.89314 1.90549 1.47557 1.47291 1.63484 1.42075 1.51828 1.10744 1.18977 1.18991 1.33158 0.97004 0.96085 0.92274 1.25995 0.98139 0.99867 0.96995 1.69792 1.45705 1.22664 1.19237 0.85481 0.79569 0.78312 0.78927 1.18321 1.20032 1.15908 1.21547 0.92395 1.00110 0.99972 1.21360 0.99955 0.95139 0.98418 1.21457 0.96119 0.96085 1.01253 1.21407 0.96213 0.98620 0.98720 1.21590 1.01442 0.91726 0.99072 0.91277 0.91078 0.91932 0.89762 0.90898 0.75122 0.90196 0.91483 0.83665 0.87361 0.91836 0.77910 0.91227 0.89512 0.92003 0.93193 0.92081 0.92798 0.91111 0.92709 0.91573 0.91435 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.83 71.98 0.71 -1.55 16 2 C -0.14 -2.63 5.41 30.59 0.17 -2.46 16 3 C 0.08 1.50 3.77 29.85 0.11 1.62 16 4 H 0.13 1.59 7.99 -2.39 -0.02 1.57 16 5 F -0.20 -4.24 16.75 44.97 0.75 -3.49 16 6 C 0.49 10.91 7.17 87.66 0.63 11.54 16 7 O -0.56 -16.76 16.60 -3.00 -0.05 -16.81 16 8 N -0.71 -12.41 5.04 -463.05 -2.33 -14.74 16 9 C 0.09 1.56 3.87 86.38 0.33 1.89 16 10 C 0.11 1.97 0.30 3.52 0.00 1.97 16 11 N -0.65 -15.71 4.01 -474.15 -1.90 -17.61 16 12 C 0.06 1.71 5.28 85.56 0.45 2.16 16 13 C 0.45 19.38 7.83 87.66 0.69 20.07 16 14 O -0.61 -31.44 15.89 -3.08 -0.05 -31.49 16 15 N -0.59 -27.35 5.09 -306.98 -1.56 -28.91 16 16 C -0.32 -18.52 10.16 84.04 0.85 -17.67 16 17 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 18 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 19 N -0.93 -55.65 13.96 21.67 0.30 -55.35 16 20 Si 0.96 38.87 27.74 68.60 1.90 40.77 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 22 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.24 -8.20 6.52 99.48 0.65 -7.55 16 24 C -0.10 -1.71 4.51 30.59 0.14 -1.58 16 25 C -0.11 -2.17 5.77 30.60 0.18 -1.99 16 26 C -0.11 -1.87 5.92 30.60 0.18 -1.69 16 27 C -0.11 -1.92 5.77 30.61 0.18 -1.74 16 28 C -0.10 -1.44 4.68 30.61 0.14 -1.29 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.92 7.94 -2.39 -0.02 0.90 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.54 8.05 -2.39 -0.02 1.52 16 34 H 0.41 5.69 6.29 -92.71 -0.58 5.10 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.38 6.76 -2.38 -0.02 1.36 16 37 H 0.34 8.38 7.28 -89.70 -0.65 7.73 16 38 H 0.11 2.77 6.22 -2.39 -0.01 2.76 16 39 H 0.06 1.63 6.60 -2.39 -0.02 1.61 16 40 H 0.39 15.09 5.76 -92.71 -0.53 14.56 16 41 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.06 1.09 6.42 -2.39 -0.02 1.08 16 44 H 0.05 1.32 7.60 -2.39 -0.02 1.31 16 45 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.05 1.26 7.60 -2.39 -0.02 1.24 16 49 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.07 0.86 7.09 -2.39 -0.02 0.85 16 51 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -76.39 400.27 1.42 -74.97 By element: Atomic # 1 Polarization: 44.39 SS G_CDS: -0.87 Total: 43.53 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 5.22 Total: 9.14 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -5.49 Total: -116.61 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -0.10 Total: -48.30 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.75 Total: -3.49 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.90 Total: 40.77 kcal Total: -76.39 1.42 -74.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115668670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.345 kcal (2) G-P(sol) polarization free energy of solvation -76.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds