Wall clock time and date at job start Wed Apr 1 2020 03:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.45777 * 2 1 4 4 C 1.53042 * 109.45808 * 240.03058 * 2 1 3 5 5 C 1.53192 * 109.30864 * 178.62748 * 4 2 1 6 6 N 1.46923 * 108.77631 * 54.63490 * 5 4 2 7 7 C 1.34780 * 120.63147 * 126.36809 * 6 5 4 8 8 O 1.21280 * 120.00499 * 180.02562 * 7 6 5 9 9 C 1.50703 * 119.99971 * 359.97438 * 7 6 5 10 10 C 1.53002 * 109.47292 * 190.00009 * 9 7 6 11 11 C 1.52997 * 109.47084 * 69.99966 * 9 7 6 12 12 F 1.39905 * 109.47157 * 310.00047 * 9 7 6 13 13 C 1.46921 * 118.74057 * 306.64140 * 6 5 4 14 14 C 1.52761 * 109.00830 * 53.30918 * 13 6 5 15 15 H 1.08997 * 109.38292 * 65.51730 * 14 13 6 16 16 C 1.53003 * 109.56288 * 185.55355 * 14 13 6 17 17 N 1.46898 * 109.47314 * 294.96632 * 16 14 13 18 18 C 1.46900 * 110.99663 * 180.02562 * 17 16 14 19 19 C 1.50705 * 109.46604 * 180.02562 * 18 17 16 20 20 O 1.21282 * 120.00239 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99713 * 180.02562 * 19 18 17 22 22 C 1.37096 * 119.99933 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99887 * 359.97438 * 22 21 19 24 24 C 1.38959 * 120.00148 * 179.97438 * 22 21 19 25 25 N 1.31407 * 119.99555 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00144 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46991 * 59.99836 * 26 24 22 28 28 H 1.48492 * 109.47108 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47060 * 300.00211 * 26 24 22 30 30 H 1.08995 * 109.46748 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46663 * 299.97092 * 1 2 3 32 32 H 1.09000 * 109.47200 * 59.97112 * 1 2 3 33 33 H 1.08996 * 109.49998 * 58.67820 * 4 2 1 34 34 H 1.08997 * 109.49242 * 298.57546 * 4 2 1 35 35 H 1.09000 * 109.58830 * 294.84620 * 5 4 2 36 36 H 1.09008 * 109.70208 * 174.49025 * 5 4 2 37 37 H 1.08995 * 109.47208 * 179.97438 * 10 9 7 38 38 H 1.08992 * 109.47060 * 300.00111 * 10 9 7 39 39 H 1.09004 * 109.46930 * 60.00025 * 10 9 7 40 40 H 1.09001 * 109.47375 * 299.99958 * 11 9 7 41 41 H 1.09002 * 109.47045 * 60.00033 * 11 9 7 42 42 H 1.09000 * 109.47140 * 179.97438 * 11 9 7 43 43 H 1.09002 * 109.58979 * 173.14313 * 13 6 5 44 44 H 1.09002 * 109.58297 * 293.57188 * 13 6 5 45 45 H 1.08998 * 109.46758 * 54.97107 * 16 14 13 46 46 H 1.09005 * 109.46831 * 174.96573 * 16 14 13 47 47 H 1.00897 * 110.99926 * 303.95458 * 17 16 14 48 48 H 1.09000 * 109.47260 * 299.99530 * 18 17 16 49 49 H 1.08994 * 109.47540 * 60.00029 * 18 17 16 50 50 H 0.97006 * 120.00141 * 359.97438 * 21 19 18 51 51 H 0.97005 * 120.00134 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6889 -1.2640 6 7 4.0676 -1.2493 0.0003 7 6 4.9610 -2.2584 0.0004 8 8 5.3627 -2.7127 1.0507 9 6 5.4600 -2.8232 -1.3047 10 6 6.2571 -4.1012 -1.0359 11 6 6.3605 -1.7960 -1.9938 12 9 4.3710 -3.1181 -2.1320 13 6 3.5669 -0.6927 1.2644 14 6 2.0396 -0.7208 1.2501 15 1 1.6970 -1.7555 1.2386 16 6 1.5026 -0.0189 2.4990 17 7 1.8923 -0.7792 3.6940 18 6 1.3922 -0.1336 4.9150 19 6 1.8112 -0.9400 6.1172 20 8 2.4619 -1.9530 5.9712 21 7 1.4620 -0.5360 7.3547 22 6 1.8436 -1.2692 8.4484 23 1 2.4237 -2.1708 8.3183 24 6 1.4839 -0.8524 9.7243 25 7 0.7785 0.2449 9.8824 26 14 2.0033 -1.8519 11.2144 27 1 3.4854 -1.9290 11.2666 28 1 1.4972 -1.1997 12.4487 29 1 1.4396 -3.2220 11.1124 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6575 -0.2207 -2.1398 34 1 1.6976 -1.7556 -1.2382 35 1 3.9145 0.3405 -1.3671 36 1 3.9438 -1.2835 -2.0984 37 1 6.6176 -4.5099 -1.9798 38 1 7.1055 -3.8714 -0.3914 39 1 5.6155 -4.8330 -0.5449 40 1 5.7927 -0.8855 -2.1854 41 1 7.2089 -1.5662 -1.3492 42 1 6.7218 -2.2046 -2.9375 43 1 3.9342 -1.2912 2.0981 44 1 3.9097 0.3364 1.3717 45 1 1.9178 0.9873 2.5571 46 1 0.4155 0.0393 2.4439 47 1 1.5740 -1.7348 3.6342 48 1 1.8064 0.8719 4.9902 49 1 0.3044 -0.0765 4.8765 50 1 0.9412 0.2741 7.4715 51 1 0.5271 0.5358 10.7731 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132590939.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:56 Heat of formation + Delta-G solvation = -151.172159 kcal Electronic energy + Delta-G solvation = -31136.821077 eV Core-core repulsion = 26791.105807 eV Total energy + Delta-G solvation = -4345.715270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.16490 -41.38414 -40.19543 -39.35049 -36.83876 -35.92089 -35.01413 -34.59421 -33.30540 -32.42634 -29.49965 -28.93772 -28.33917 -26.81851 -25.44641 -24.86780 -23.20500 -22.70216 -21.38289 -20.86330 -20.23688 -19.90415 -18.61736 -17.83892 -17.63392 -17.11476 -16.90145 -16.58083 -16.33029 -16.00394 -15.90392 -15.69917 -15.57756 -15.30313 -15.11368 -14.47756 -14.43056 -14.30703 -14.06251 -14.02621 -13.68411 -13.54286 -13.41594 -13.33985 -13.21300 -13.15860 -13.02209 -12.95374 -12.74637 -12.66299 -12.57542 -12.45595 -12.13898 -12.09581 -11.96602 -11.72833 -11.52823 -11.34370 -11.26902 -10.72307 -10.36053 -10.03745 -9.74650 -9.27764 -8.48593 -5.97407 1.29891 1.37858 1.39389 1.50642 1.80243 2.03619 2.27669 2.90456 3.04078 3.18364 3.36867 3.48239 3.55350 3.69205 3.72012 3.79010 3.92502 4.00159 4.21557 4.30382 4.34238 4.47004 4.49636 4.52614 4.55494 4.58023 4.60114 4.63978 4.68335 4.71494 4.78813 4.86413 4.88885 4.94234 5.02531 5.03622 5.07458 5.11154 5.11689 5.22924 5.38534 5.39924 5.47463 5.53691 5.87884 6.10328 6.25474 6.34308 6.58681 6.92703 7.10792 7.54147 8.10594 8.68634 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.002268 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.084156 B =12342.607545 C =13812.003427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 H 0.090 0.910 4 C -0.123 4.123 5 C 0.081 3.919 6 N -0.598 5.598 7 C 0.484 3.516 8 O -0.571 6.571 9 C 0.107 3.893 10 C -0.159 4.159 11 C -0.171 4.171 12 F -0.193 7.193 13 C 0.122 3.878 14 C -0.083 4.083 15 H 0.052 0.948 16 C 0.067 3.933 17 N -0.687 5.687 18 C 0.068 3.932 19 C 0.435 3.565 20 O -0.626 6.626 21 N -0.572 5.572 22 C -0.336 4.336 23 H 0.075 0.925 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.267 1.267 29 H -0.272 1.272 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.339 0.661 48 H 0.106 0.894 49 H 0.068 0.932 50 H 0.397 0.603 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 4.090 -30.983 31.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.040 4.040 6 N -0.329 5.329 7 C 0.271 3.729 8 O -0.450 6.450 9 C 0.085 3.915 10 C -0.217 4.217 11 C -0.228 4.228 12 F -0.174 7.174 13 C 0.000 4.000 14 C -0.102 4.102 15 H 0.070 0.930 16 C -0.062 4.062 17 N -0.319 5.319 18 C -0.065 4.065 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.093 0.907 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.191 1.191 29 H -0.198 1.198 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.071 0.929 47 H 0.157 0.843 48 H 0.124 0.876 49 H 0.086 0.914 50 H 0.231 0.769 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.074 3.593 -30.333 30.815 hybrid contribution -1.119 -0.585 1.413 1.894 sum 2.956 3.008 -28.920 29.226 Atomic orbital electron populations 1.21884 0.94186 1.01680 1.02718 1.21124 0.96402 0.99879 0.92520 0.89180 1.21938 0.94142 1.01057 0.98930 1.22513 0.95529 1.00866 0.85045 1.48296 1.41517 1.34232 1.08888 1.21552 0.79663 0.80013 0.91676 1.90768 1.58730 1.60859 1.34631 1.21227 0.85184 0.99140 0.85916 1.22198 1.00541 0.94525 1.04399 1.22528 0.99593 0.98075 1.02643 1.92822 1.57009 1.94383 1.73184 1.21460 0.94135 0.99001 0.85400 1.21359 0.94090 0.99563 0.95225 0.92987 1.22151 0.98777 0.97786 0.87486 1.60083 1.64839 1.05950 1.00984 1.21519 0.98913 0.98163 0.87883 1.20976 0.83939 0.87590 0.85234 1.90508 1.44848 1.29400 1.86483 1.41917 1.48980 1.25328 1.04766 1.19612 1.33514 1.07933 0.85534 0.90661 1.26031 0.96377 0.97655 1.01104 1.69659 1.37849 1.23289 1.25174 0.85004 0.78571 0.78065 0.76784 1.19862 1.19132 1.19752 0.93653 0.92223 0.90833 0.87600 0.92894 0.88886 0.87116 0.87757 0.90162 0.92834 0.89365 0.89906 0.87504 0.91959 0.90323 0.89618 0.92883 0.84340 0.87581 0.91411 0.76874 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.82 71.98 0.63 -1.22 16 2 C -0.08 -1.10 2.23 -10.76 -0.02 -1.13 16 3 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.12 -1.48 5.36 30.67 0.16 -1.32 16 5 C 0.08 1.06 4.89 86.36 0.42 1.48 16 6 N -0.60 -13.17 2.98 -819.73 -2.44 -15.61 16 7 C 0.48 12.83 6.77 87.66 0.59 13.42 16 8 O -0.57 -21.10 15.39 -3.03 -0.05 -21.15 16 9 C 0.11 1.92 1.20 -11.54 -0.01 1.91 16 10 C -0.16 -2.81 8.28 71.98 0.60 -2.21 16 11 C -0.17 -1.76 8.60 71.98 0.62 -1.14 16 12 F -0.19 -3.48 14.34 44.97 0.64 -2.83 16 13 C 0.12 3.12 5.51 86.22 0.47 3.60 16 14 C -0.08 -1.77 2.01 -10.86 -0.02 -1.79 16 15 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 16 C 0.07 1.53 4.84 86.30 0.42 1.94 16 17 N -0.69 -22.92 5.69 -517.93 -2.95 -25.87 16 18 C 0.07 2.39 6.17 85.56 0.53 2.92 16 19 C 0.43 21.75 7.82 87.66 0.69 22.44 16 20 O -0.63 -37.02 15.78 -3.04 -0.05 -37.07 16 21 N -0.57 -30.47 5.29 -306.99 -1.62 -32.10 16 22 C -0.34 -19.83 9.68 84.04 0.81 -19.02 16 23 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 25 N -0.92 -50.50 13.05 21.67 0.28 -50.22 16 26 Si 0.99 44.24 29.55 68.60 2.03 46.26 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.78 6.29 -2.39 -0.02 0.77 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 1.27 3.85 -2.38 -0.01 1.26 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.50 7.99 -2.39 -0.02 1.48 16 39 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.09 0.70 5.98 -2.39 -0.01 0.69 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 2.24 6.78 -2.39 -0.02 2.22 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.05 1.06 6.14 -2.38 -0.01 1.05 16 47 H 0.34 12.45 8.43 -89.70 -0.76 11.69 16 48 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 49 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.40 19.85 7.90 -92.70 -0.73 19.12 16 51 H 0.28 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -78.50 402.01 1.67 -76.83 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: -0.54 Total: 42.04 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.36 Total: 19.71 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -6.73 Total: -123.79 kcal Atomic # 8 Polarization: -58.13 SS G_CDS: -0.09 Total: -58.22 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.64 Total: -2.83 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -78.50 1.67 -76.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132590939.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.342 kcal (2) G-P(sol) polarization free energy of solvation -78.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds