Wall clock time and date at job start Wed Apr 1 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46143 * 2 1 4 4 C 1.53047 * 109.46123 * 119.97181 * 2 1 3 5 5 C 1.53187 * 109.31279 * 181.37293 * 4 2 1 6 6 N 1.46917 * 108.78023 * 305.36463 * 5 4 2 7 7 C 1.34775 * 120.63506 * 233.59021 * 6 5 4 8 8 O 1.21289 * 120.00202 * 174.28669 * 7 6 5 9 9 C 1.50696 * 119.99744 * 354.28985 * 7 6 5 10 10 C 1.50697 * 115.55057 * 304.11427 * 9 7 6 11 11 C 1.38682 * 120.41762 * 330.15505 * 10 9 7 12 12 C 1.38622 * 118.42143 * 179.78243 * 11 10 9 13 13 C 1.38230 * 119.16104 * 0.46945 * 12 11 10 14 14 N 1.31860 * 120.76480 * 359.77014 * 13 12 11 15 15 C 1.31887 * 121.72255 * 0.02562 * 14 13 12 16 16 C 1.53004 * 117.49857 * 158.44777 * 9 7 6 17 17 C 1.53001 * 117.50351 * 89.78441 * 9 7 6 18 18 C 1.46930 * 118.73782 * 53.60539 * 6 5 4 19 19 C 1.53036 * 109.45264 * 240.03455 * 2 1 3 20 20 H 1.09000 * 109.49466 * 298.57221 * 19 2 1 21 21 C 1.53001 * 109.49661 * 58.66855 * 19 2 1 22 22 N 1.46502 * 109.46934 * 185.00174 * 21 19 2 23 23 C 1.36938 * 119.99634 * 179.97438 * 22 21 19 24 24 H 1.08001 * 120.00171 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99699 * 180.02562 * 23 22 21 26 26 N 1.31623 * 119.99998 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00188 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47036 * 89.99786 * 27 25 23 29 29 H 1.48498 * 109.47397 * 210.00224 * 27 25 23 30 30 H 1.48500 * 109.47287 * 330.00054 * 27 25 23 31 31 H 1.09002 * 109.47072 * 300.02399 * 1 2 3 32 32 H 1.08996 * 109.46957 * 60.02641 * 1 2 3 33 33 H 1.08998 * 109.47143 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.49757 * 301.32488 * 4 2 1 35 35 H 1.08998 * 109.49673 * 61.41842 * 4 2 1 36 36 H 1.08998 * 109.58504 * 65.15413 * 5 4 2 37 37 H 1.09007 * 109.58586 * 185.57537 * 5 4 2 38 38 H 1.07998 * 120.78526 * 0.02562 * 11 10 9 39 39 H 1.07996 * 120.42081 * 180.26614 * 12 11 10 40 40 H 1.08006 * 119.62208 * 179.79139 * 13 12 11 41 41 H 1.07996 * 119.61612 * 179.97438 * 15 14 13 42 42 H 1.08997 * 117.49801 * 359.97438 * 16 9 7 43 43 H 1.09002 * 117.49938 * 145.02408 * 16 9 7 44 44 H 1.08993 * 117.49999 * 214.97843 * 17 9 7 45 45 H 1.08996 * 117.49574 * 359.97438 * 17 9 7 46 46 H 1.08997 * 109.59084 * 186.60460 * 18 6 5 47 47 H 1.09003 * 109.70317 * 66.25547 * 18 6 5 48 48 H 1.09003 * 109.47049 * 305.00239 * 21 19 2 49 49 H 1.08997 * 109.46984 * 65.00118 * 21 19 2 50 50 H 0.97003 * 119.99906 * 0.02562 * 22 21 19 51 51 H 0.96996 * 120.00125 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2501 5 6 3.5714 -0.6890 1.2640 6 7 4.0677 -1.2492 -0.0002 7 6 4.9617 -2.2578 -0.0003 8 8 5.2856 -2.7810 -1.0456 9 6 5.5590 -2.7354 1.2982 10 6 6.2451 -1.6791 2.1254 11 6 6.8481 -0.5902 1.5140 12 6 7.4635 0.3592 2.3150 13 6 7.4642 0.1851 3.6863 14 7 6.8849 -0.8657 4.2331 15 6 6.2867 -1.7864 3.5025 16 6 6.1458 -4.1481 1.3285 17 6 4.8258 -3.8516 2.0448 18 6 3.5712 -0.6889 -1.2644 19 6 2.0397 -0.7207 -1.2501 20 1 1.6974 -1.7556 -1.2383 21 6 1.5026 -0.0187 -2.4990 22 7 1.8913 -0.7770 -3.6907 23 6 1.5197 -0.3375 -4.9332 24 1 0.9404 0.5684 -5.0347 25 6 1.8875 -1.0563 -6.0623 26 7 1.5308 -0.6336 -7.2567 27 14 2.8888 -2.6234 -5.8868 28 1 1.9722 -3.7839 -5.7509 29 1 3.7410 -2.8038 -7.0895 30 1 3.7494 -2.5285 -4.6802 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8902 33 1 -0.3633 -1.0276 0.0005 34 1 1.6574 -0.2208 2.1399 35 1 1.6976 -1.7557 1.2383 36 1 3.9145 0.3404 1.3672 37 1 3.9417 -1.2850 2.0982 38 1 6.8351 -0.4824 0.4394 39 1 7.9392 1.2221 1.8731 40 1 7.9444 0.9185 4.3173 41 1 5.8234 -2.6336 3.9860 42 1 6.0994 -4.7322 0.4094 43 1 7.0278 -4.3136 1.9472 44 1 4.8400 -3.8221 3.1342 45 1 3.9112 -4.2402 1.5970 46 1 3.9413 -1.2848 -2.0986 47 1 3.9143 0.3403 -1.3701 48 1 0.4155 0.0395 -2.4439 49 1 1.9178 0.9874 -2.5570 50 1 2.4113 -1.5908 -3.5994 51 1 1.7882 -1.1356 -8.0457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133065375.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:37 Heat of formation + Delta-G solvation = 40.721583 kcal Electronic energy + Delta-G solvation = -31238.554330 eV Core-core repulsion = 27331.929421 eV Total energy + Delta-G solvation = -3906.624908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36300 -39.97855 -38.48889 -36.75801 -35.17217 -33.83763 -32.77241 -31.95050 -31.21058 -30.27043 -28.48802 -26.43802 -25.05035 -24.06619 -23.65904 -22.99686 -22.65816 -21.94597 -21.13959 -19.98987 -18.85728 -18.01331 -17.50955 -17.09014 -16.51655 -16.11333 -15.59822 -15.04599 -15.00461 -14.90359 -14.49840 -14.35904 -14.15209 -14.07507 -13.60069 -13.41911 -13.26352 -13.22210 -13.05454 -12.75343 -12.56562 -12.39360 -12.04102 -11.84955 -11.81809 -11.72805 -11.38102 -11.25328 -11.03403 -10.96672 -10.88369 -10.67990 -10.36956 -10.20744 -10.11698 -10.06957 -9.97511 -9.60571 -9.53368 -9.18651 -8.87251 -8.64025 -7.19511 -5.73950 -3.09386 0.66265 0.89474 2.37519 2.80554 3.23172 3.43841 3.50757 3.52760 3.60349 3.92295 4.14834 4.18358 4.34891 4.49180 4.57666 4.60570 4.61877 4.64233 4.73576 4.76616 4.86092 5.00552 5.05716 5.15765 5.17561 5.27928 5.32973 5.40678 5.49537 5.53144 5.53826 5.58155 5.62052 5.69684 5.74846 5.75869 5.77101 5.83204 5.85298 5.87422 5.99740 6.08480 6.23351 6.27634 6.32236 6.35277 6.48599 6.70532 6.76048 7.32658 7.56905 8.01695 8.08633 8.45094 9.24234 9.97137 10.16373 11.44329 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.003330 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.645741 B = 8405.458342 C = 9238.633135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.110 3.890 6 N -0.602 5.602 7 C 0.550 3.450 8 O -0.527 6.527 9 C -0.122 4.122 10 C -0.089 4.089 11 C -0.063 4.063 12 C -0.163 4.163 13 C 0.093 3.907 14 N -0.479 5.479 15 C 0.099 3.901 16 C -0.131 4.131 17 C -0.153 4.153 18 C 0.117 3.883 19 C -0.105 4.105 20 H 0.074 0.926 21 C 0.163 3.837 22 N -0.757 5.757 23 C -0.244 4.244 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.935 5.935 27 Si 0.879 3.121 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.273 1.273 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.070 0.930 48 H 0.036 0.964 49 H 0.027 0.973 50 H 0.361 0.639 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.465 -0.586 27.731 29.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.013 4.013 6 N -0.334 5.334 7 C 0.336 3.664 8 O -0.403 6.403 9 C -0.126 4.126 10 C -0.091 4.091 11 C -0.089 4.089 12 C -0.183 4.183 13 C -0.064 4.064 14 N -0.187 5.187 15 C -0.058 4.058 16 C -0.168 4.168 17 C -0.190 4.190 18 C -0.005 4.005 19 C -0.125 4.125 20 H 0.092 0.908 21 C 0.035 3.965 22 N -0.403 5.403 23 C -0.374 4.374 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.583 5.583 27 Si 0.709 3.291 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.198 1.198 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.174 0.826 41 H 0.173 0.827 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.116 0.884 47 H 0.088 0.912 48 H 0.054 0.946 49 H 0.044 0.956 50 H 0.195 0.805 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.559 -0.797 27.886 29.181 hybrid contribution 0.686 -0.865 -1.038 1.515 sum 9.244 -1.661 26.848 28.444 Atomic orbital electron populations 1.21887 0.94737 1.02014 1.01931 1.21076 0.96137 0.99380 0.93640 0.90941 1.21987 0.94468 1.01623 0.98526 1.21774 0.94662 0.98993 0.85866 1.48048 1.42566 1.35012 1.07817 1.19287 0.78926 0.79391 0.88777 1.90765 1.61036 1.55723 1.32793 1.20049 1.05674 0.90500 0.96344 1.19782 0.99377 0.95485 0.94435 1.21480 0.93984 0.92595 1.00867 1.22168 1.00714 1.00303 0.95122 1.22805 0.95728 0.94952 0.92901 1.67744 1.08211 1.02298 1.40406 1.22628 0.96055 0.97450 0.89696 1.23140 0.97030 0.93395 1.03270 1.23219 0.97404 0.98723 0.99661 1.21778 0.94008 0.99190 0.85486 1.21760 0.94320 1.00827 0.95544 0.90800 1.20709 0.97431 0.94057 0.84279 1.42779 1.66128 1.28772 1.02590 1.19035 1.28501 1.07953 0.81890 0.89233 1.24649 1.00554 0.98648 0.95111 1.69703 1.50926 1.40618 0.97032 0.86622 0.80609 0.84630 0.77233 1.21128 1.21691 1.19842 0.93092 0.91454 0.92765 0.90774 0.91438 0.91703 0.89847 0.84994 0.84469 0.82602 0.82662 0.86900 0.87654 0.87292 0.87521 0.88401 0.91192 0.94609 0.95555 0.80546 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.82 37.16 0.33 -1.30 16 2 C -0.08 -0.95 2.23 -90.58 -0.20 -1.15 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.20 5.36 -26.61 -0.14 -1.34 16 5 C 0.11 1.07 5.44 -3.72 -0.02 1.05 16 6 N -0.60 -7.73 2.97 -172.77 -0.51 -8.24 16 7 C 0.55 7.73 5.96 -10.99 -0.07 7.66 16 8 O -0.53 -9.84 15.90 5.55 0.09 -9.75 16 9 C -0.12 -1.24 1.35 -156.81 -0.21 -1.45 16 10 C -0.09 -0.82 3.53 -104.48 -0.37 -1.18 16 11 C -0.06 -0.60 9.16 -39.28 -0.36 -0.96 16 12 C -0.16 -1.27 10.11 -39.44 -0.40 -1.67 16 13 C 0.09 0.73 11.18 -17.54 -0.20 0.53 16 14 N -0.48 -4.46 10.36 -13.25 -0.14 -4.60 16 15 C 0.10 0.83 10.45 -17.55 -0.18 0.65 16 16 C -0.13 -1.19 9.72 -26.69 -0.26 -1.45 16 17 C -0.15 -1.17 9.31 -26.69 -0.25 -1.42 16 18 C 0.12 1.81 5.53 -3.71 -0.02 1.79 16 19 C -0.10 -1.58 1.92 -90.50 -0.17 -1.75 16 20 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 21 C 0.16 3.07 5.41 -4.04 -0.02 3.05 16 22 N -0.76 -18.28 5.18 -59.91 -0.31 -18.59 16 23 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 24 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -29.95 13.97 55.49 0.78 -29.18 16 27 Si 0.88 23.19 27.74 -169.99 -4.71 18.48 16 28 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 30 H -0.27 -7.01 6.52 56.52 0.37 -6.64 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.82 6.29 -51.93 -0.33 0.50 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.72 5.17 -51.92 -0.27 0.45 16 38 H 0.13 1.41 7.44 -52.49 -0.39 1.02 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.16 0.98 5.97 -52.49 -0.31 0.67 16 42 H 0.11 1.20 7.84 -51.93 -0.41 0.79 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.11 0.56 6.14 -51.93 -0.32 0.24 16 45 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.10 1.89 6.21 -51.93 -0.32 1.57 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.04 0.68 6.14 -51.93 -0.32 0.36 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.36 8.80 4.76 -40.82 -0.19 8.60 16 51 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -35.07 396.30 -9.59 -44.65 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -7.95 Total: 7.29 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.80 Total: -6.04 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.19 Total: -60.61 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.71 Total: 18.48 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.07 -9.59 -44.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133065375.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.376 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds