Wall clock time and date at job start Wed Apr 1 2020 03:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46143 * 2 1 4 4 C 1.53047 * 109.46123 * 119.97181 * 2 1 3 5 5 C 1.53187 * 109.31279 * 181.37293 * 4 2 1 6 6 N 1.46917 * 108.78023 * 305.36463 * 5 4 2 7 7 C 1.34775 * 120.63506 * 233.59021 * 6 5 4 8 8 O 1.21289 * 120.00202 * 174.28669 * 7 6 5 9 9 C 1.50696 * 119.99744 * 354.28985 * 7 6 5 10 10 C 1.50697 * 115.55057 * 304.11427 * 9 7 6 11 11 C 1.38682 * 120.41762 * 330.15505 * 10 9 7 12 12 C 1.38622 * 118.42143 * 179.78243 * 11 10 9 13 13 C 1.38230 * 119.16104 * 0.46945 * 12 11 10 14 14 N 1.31860 * 120.76480 * 359.77014 * 13 12 11 15 15 C 1.31887 * 121.72255 * 0.02562 * 14 13 12 16 16 C 1.53004 * 117.49857 * 158.44777 * 9 7 6 17 17 C 1.53001 * 117.50351 * 89.78441 * 9 7 6 18 18 C 1.46930 * 118.73782 * 53.60539 * 6 5 4 19 19 C 1.53036 * 109.45264 * 240.03455 * 2 1 3 20 20 H 1.09000 * 109.49466 * 298.57221 * 19 2 1 21 21 C 1.53001 * 109.49661 * 58.66855 * 19 2 1 22 22 N 1.46502 * 109.46934 * 185.00174 * 21 19 2 23 23 C 1.36938 * 119.99634 * 179.97438 * 22 21 19 24 24 H 1.08001 * 120.00171 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99699 * 180.02562 * 23 22 21 26 26 N 1.31623 * 119.99998 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00188 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47036 * 89.99786 * 27 25 23 29 29 H 1.48498 * 109.47397 * 210.00224 * 27 25 23 30 30 H 1.48500 * 109.47287 * 330.00054 * 27 25 23 31 31 H 1.09002 * 109.47072 * 300.02399 * 1 2 3 32 32 H 1.08996 * 109.46957 * 60.02641 * 1 2 3 33 33 H 1.08998 * 109.47143 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.49757 * 301.32488 * 4 2 1 35 35 H 1.08998 * 109.49673 * 61.41842 * 4 2 1 36 36 H 1.08998 * 109.58504 * 65.15413 * 5 4 2 37 37 H 1.09007 * 109.58586 * 185.57537 * 5 4 2 38 38 H 1.07998 * 120.78526 * 0.02562 * 11 10 9 39 39 H 1.07996 * 120.42081 * 180.26614 * 12 11 10 40 40 H 1.08006 * 119.62208 * 179.79139 * 13 12 11 41 41 H 1.07996 * 119.61612 * 179.97438 * 15 14 13 42 42 H 1.08997 * 117.49801 * 359.97438 * 16 9 7 43 43 H 1.09002 * 117.49938 * 145.02408 * 16 9 7 44 44 H 1.08993 * 117.49999 * 214.97843 * 17 9 7 45 45 H 1.08996 * 117.49574 * 359.97438 * 17 9 7 46 46 H 1.08997 * 109.59084 * 186.60460 * 18 6 5 47 47 H 1.09003 * 109.70317 * 66.25547 * 18 6 5 48 48 H 1.09003 * 109.47049 * 305.00239 * 21 19 2 49 49 H 1.08997 * 109.46984 * 65.00118 * 21 19 2 50 50 H 0.97003 * 119.99906 * 0.02562 * 22 21 19 51 51 H 0.96996 * 120.00125 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2501 5 6 3.5714 -0.6890 1.2640 6 7 4.0677 -1.2492 -0.0002 7 6 4.9617 -2.2578 -0.0003 8 8 5.2856 -2.7810 -1.0456 9 6 5.5590 -2.7354 1.2982 10 6 6.2451 -1.6791 2.1254 11 6 6.8481 -0.5902 1.5140 12 6 7.4635 0.3592 2.3150 13 6 7.4642 0.1851 3.6863 14 7 6.8849 -0.8657 4.2331 15 6 6.2867 -1.7864 3.5025 16 6 6.1458 -4.1481 1.3285 17 6 4.8258 -3.8516 2.0448 18 6 3.5712 -0.6889 -1.2644 19 6 2.0397 -0.7207 -1.2501 20 1 1.6974 -1.7556 -1.2383 21 6 1.5026 -0.0187 -2.4990 22 7 1.8913 -0.7770 -3.6907 23 6 1.5197 -0.3375 -4.9332 24 1 0.9404 0.5684 -5.0347 25 6 1.8875 -1.0563 -6.0623 26 7 1.5308 -0.6336 -7.2567 27 14 2.8888 -2.6234 -5.8868 28 1 1.9722 -3.7839 -5.7509 29 1 3.7410 -2.8038 -7.0895 30 1 3.7494 -2.5285 -4.6802 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8902 33 1 -0.3633 -1.0276 0.0005 34 1 1.6574 -0.2208 2.1399 35 1 1.6976 -1.7557 1.2383 36 1 3.9145 0.3404 1.3672 37 1 3.9417 -1.2850 2.0982 38 1 6.8351 -0.4824 0.4394 39 1 7.9392 1.2221 1.8731 40 1 7.9444 0.9185 4.3173 41 1 5.8234 -2.6336 3.9860 42 1 6.0994 -4.7322 0.4094 43 1 7.0278 -4.3136 1.9472 44 1 4.8400 -3.8221 3.1342 45 1 3.9112 -4.2402 1.5970 46 1 3.9413 -1.2848 -2.0986 47 1 3.9143 0.3403 -1.3701 48 1 0.4155 0.0395 -2.4439 49 1 1.9178 0.9874 -2.5570 50 1 2.4113 -1.5908 -3.5994 51 1 1.7882 -1.1356 -8.0457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133065375.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:35 Heat of formation + Delta-G solvation = 18.437404 kcal Electronic energy + Delta-G solvation = -31239.520644 eV Core-core repulsion = 27331.929421 eV Total energy + Delta-G solvation = -3907.591223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.19676 -40.83010 -39.53243 -37.64790 -36.80643 -35.14206 -33.73563 -33.41626 -31.96623 -31.75631 -29.46333 -27.89788 -26.03644 -24.73516 -24.69470 -24.43640 -23.35095 -22.79842 -22.60675 -21.17133 -19.81127 -19.62311 -18.68030 -17.90036 -17.41413 -17.00737 -16.76733 -16.39464 -16.03125 -15.98910 -15.68787 -15.44178 -15.21274 -14.99027 -14.87392 -14.67289 -14.37155 -14.26935 -14.17588 -14.01782 -13.78915 -13.43529 -13.25331 -13.01660 -12.88949 -12.72134 -12.66472 -12.45905 -12.30031 -12.12186 -11.97231 -11.91910 -11.83066 -11.75940 -11.38354 -11.28009 -11.06764 -10.95013 -10.72328 -10.36928 -9.81815 -9.74553 -9.32895 -8.09286 -5.40834 0.06206 0.25148 1.29771 1.33051 1.35299 1.39636 1.80224 2.40144 2.55180 2.93842 3.22770 3.28144 3.28985 3.47856 3.58980 3.68075 3.72274 3.77491 3.85088 3.90572 3.94555 3.99588 4.01937 4.20106 4.27558 4.32160 4.45351 4.47525 4.53158 4.58733 4.66039 4.70509 4.74107 4.76249 4.86013 4.88838 4.89455 4.91746 5.02966 5.08291 5.10427 5.11990 5.16863 5.21339 5.26649 5.39931 5.47922 5.53184 5.69631 5.71012 6.15950 6.30257 6.97494 7.01710 7.02229 7.79292 7.95844 9.12421 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.003330 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.645741 B = 8405.458342 C = 9238.633135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.081 0.919 4 C -0.120 4.120 5 C 0.109 3.891 6 N -0.596 5.596 7 C 0.544 3.456 8 O -0.587 6.587 9 C -0.130 4.130 10 C -0.090 4.090 11 C -0.081 4.081 12 C -0.161 4.161 13 C 0.093 3.907 14 N -0.494 5.494 15 C 0.104 3.896 16 C -0.138 4.138 17 C -0.127 4.127 18 C 0.121 3.879 19 C -0.091 4.091 20 H 0.060 0.940 21 C 0.159 3.841 22 N -0.762 5.762 23 C -0.229 4.229 24 H 0.065 0.935 25 C -0.055 4.055 26 N -0.979 5.979 27 Si 0.943 3.057 28 H -0.277 1.277 29 H -0.292 1.292 30 H -0.269 1.269 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.155 0.845 40 H 0.182 0.818 41 H 0.180 0.820 42 H 0.088 0.912 43 H 0.125 0.875 44 H 0.145 0.855 45 H 0.101 0.899 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.041 0.959 49 H 0.028 0.972 50 H 0.361 0.639 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.787 -0.657 32.435 33.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.099 0.901 4 C -0.158 4.158 5 C -0.013 4.013 6 N -0.327 5.327 7 C 0.332 3.668 8 O -0.467 6.467 9 C -0.134 4.134 10 C -0.092 4.092 11 C -0.107 4.107 12 C -0.180 4.180 13 C -0.063 4.063 14 N -0.203 5.203 15 C -0.053 4.053 16 C -0.175 4.175 17 C -0.164 4.164 18 C -0.002 4.002 19 C -0.111 4.111 20 H 0.078 0.922 21 C 0.033 3.967 22 N -0.407 5.407 23 C -0.360 4.360 24 H 0.083 0.917 25 C -0.247 4.247 26 N -0.630 5.630 27 Si 0.772 3.228 28 H -0.204 1.204 29 H -0.218 1.218 30 H -0.195 1.195 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.172 0.828 40 H 0.199 0.801 41 H 0.197 0.803 42 H 0.107 0.893 43 H 0.143 0.857 44 H 0.163 0.837 45 H 0.120 0.880 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.058 0.942 49 H 0.046 0.954 50 H 0.194 0.806 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.861 -0.844 32.674 33.865 hybrid contribution 0.572 -0.720 -2.477 2.642 sum 9.433 -1.563 30.197 31.675 Atomic orbital electron populations 1.21859 0.94131 1.01942 1.02386 1.21067 0.96541 0.99537 0.92513 0.90073 1.21971 0.93802 1.01630 0.98405 1.22024 0.95055 0.99676 0.84529 1.48089 1.42065 1.34568 1.08005 1.20018 0.78372 0.78784 0.89589 1.90729 1.62953 1.57730 1.35261 1.19894 1.07148 0.91333 0.95027 1.19674 0.99771 0.95029 0.94758 1.21462 0.95307 0.93863 1.00081 1.22352 1.00142 1.00346 0.95196 1.23241 0.95025 0.94982 0.93074 1.67821 1.08769 1.02896 1.40775 1.22905 0.95569 0.97857 0.88971 1.23181 0.98973 0.92340 1.03039 1.23388 0.96222 0.95492 1.01302 1.21496 0.94295 0.98560 0.85816 1.21614 0.93794 1.00052 0.95624 0.92157 1.20922 0.97753 0.93912 0.84119 1.42871 1.65953 1.29181 1.02701 1.19074 1.26620 1.06537 0.83763 0.91736 1.25325 1.02501 1.01987 0.94911 1.69845 1.53055 1.42330 0.97813 0.85594 0.79165 0.81102 0.76988 1.20359 1.21807 1.19471 0.90374 0.93257 0.93115 0.87449 0.91592 0.90719 0.88029 0.87212 0.82751 0.80072 0.80326 0.89328 0.85657 0.83697 0.88031 0.92760 0.90833 0.94163 0.95428 0.80649 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.82 71.98 0.63 -2.21 16 2 C -0.08 -1.58 2.23 -10.77 -0.02 -1.60 16 3 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.12 -1.80 5.36 30.67 0.16 -1.64 16 5 C 0.11 1.80 5.44 86.36 0.47 2.27 16 6 N -0.60 -15.04 2.97 -818.92 -2.43 -17.47 16 7 C 0.54 15.48 5.96 87.66 0.52 16.01 16 8 O -0.59 -23.15 15.90 -3.06 -0.05 -23.20 16 9 C -0.13 -2.47 1.35 -53.67 -0.07 -2.54 16 10 C -0.09 -1.46 3.53 -19.77 -0.07 -1.53 16 11 C -0.08 -1.45 9.16 22.47 0.21 -1.25 16 12 C -0.16 -2.15 10.11 22.36 0.23 -1.92 16 13 C 0.09 1.16 11.18 84.69 0.95 2.10 16 14 N -0.49 -7.46 10.36 -195.83 -2.03 -9.49 16 15 C 0.10 1.36 10.45 84.67 0.89 2.25 16 16 C -0.14 -2.34 9.72 30.62 0.30 -2.04 16 17 C -0.13 -1.59 9.31 30.62 0.29 -1.30 16 18 C 0.12 3.83 5.53 86.36 0.48 4.31 16 19 C -0.09 -2.71 1.92 -10.72 -0.02 -2.73 16 20 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 21 C 0.16 6.07 5.41 86.38 0.47 6.54 16 22 N -0.76 -37.65 5.18 -343.44 -1.78 -39.43 16 23 C -0.23 -13.56 10.47 84.03 0.88 -12.68 16 24 H 0.06 4.09 8.06 -2.91 -0.02 4.07 16 25 C -0.06 -3.41 5.50 84.86 0.47 -2.95 16 26 N -0.98 -64.65 13.97 21.65 0.30 -64.35 16 27 Si 0.94 49.58 27.74 68.60 1.90 51.48 16 28 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 30 H -0.27 -13.85 6.52 99.48 0.65 -13.20 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.14 6.29 -2.39 -0.02 1.12 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.37 5.17 -2.38 -0.01 1.36 16 38 H 0.11 2.43 7.44 -2.91 -0.02 2.41 16 39 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.18 1.36 5.97 -2.91 -0.02 1.34 16 42 H 0.09 1.95 7.84 -2.39 -0.02 1.93 16 43 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.15 0.76 6.14 -2.39 -0.01 0.75 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.05 2.21 6.21 -2.39 -0.01 2.20 16 47 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.04 1.53 6.14 -2.39 -0.01 1.52 16 49 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.36 17.98 4.76 -92.71 -0.44 17.54 16 51 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -80.41 396.30 3.09 -77.32 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.44 Total: 26.06 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 6.74 Total: -0.92 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -5.94 Total: -130.73 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.05 Total: -23.20 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.90 Total: 51.48 kcal Total: -80.41 3.09 -77.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133065375.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.753 kcal (2) G-P(sol) polarization free energy of solvation -80.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds