Wall clock time and date at job start Wed Apr 1 2020 03:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.44949 * 2 1 4 4 C 1.53043 * 109.45478 * 119.96552 * 2 1 3 5 5 C 1.53194 * 109.31141 * 181.38621 * 4 2 1 6 6 N 1.46929 * 108.88954 * 305.29169 * 5 4 2 7 7 C 1.34774 * 120.63109 * 233.67324 * 6 5 4 8 8 O 1.21516 * 120.00124 * 172.27592 * 7 6 5 9 9 C 1.48176 * 119.99857 * 352.27639 * 7 6 5 10 10 C 1.39313 * 119.72008 * 170.49650 * 9 7 6 11 11 C 1.38594 * 119.05493 * 179.70879 * 10 9 7 12 12 C 1.38623 * 118.48821 * 0.55428 * 11 10 9 13 13 C 1.50693 * 120.32519 * 179.75343 * 12 11 10 14 14 C 1.52999 * 117.50107 * 188.59987 * 13 12 11 15 15 C 1.52993 * 117.50323 * 119.97516 * 13 12 11 16 16 C 1.38568 * 119.35278 * 359.72366 * 12 11 10 17 17 N 1.31523 * 120.90111 * 359.97438 * 16 12 11 18 18 C 1.47206 * 118.55600 * 53.54122 * 6 5 4 19 19 C 1.53037 * 109.45892 * 240.02854 * 2 1 3 20 20 H 1.09000 * 109.49964 * 298.56961 * 19 2 1 21 21 C 1.52999 * 109.49719 * 58.63628 * 19 2 1 22 22 N 1.46502 * 109.47293 * 184.99767 * 21 19 2 23 23 C 1.36930 * 119.99943 * 179.97438 * 22 21 19 24 24 H 1.08001 * 120.00570 * 359.97438 * 23 22 21 25 25 C 1.38817 * 119.99901 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99885 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99948 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46961 * 90.00639 * 27 25 23 29 29 H 1.48507 * 109.47095 * 210.00261 * 27 25 23 30 30 H 1.48498 * 109.47056 * 330.00265 * 27 25 23 31 31 H 1.09003 * 109.47127 * 300.03910 * 1 2 3 32 32 H 1.08999 * 109.46692 * 60.03672 * 1 2 3 33 33 H 1.08996 * 109.47067 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.50159 * 61.43611 * 4 2 1 35 35 H 1.09002 * 109.49869 * 301.33326 * 4 2 1 36 36 H 1.09005 * 109.58755 * 65.14773 * 5 4 2 37 37 H 1.09000 * 109.59008 * 185.43235 * 5 4 2 38 38 H 1.08001 * 120.47019 * 359.97438 * 10 9 7 39 39 H 1.07991 * 120.75393 * 180.27755 * 11 10 9 40 40 H 1.09002 * 115.54926 * 334.30066 * 13 12 11 41 41 H 1.09004 * 117.50087 * 359.97438 * 14 13 12 42 42 H 1.09001 * 117.50622 * 145.01492 * 14 13 12 43 43 H 1.09004 * 117.50151 * 214.97709 * 15 13 12 44 44 H 1.09002 * 117.50133 * 359.97289 * 15 13 12 45 45 H 1.08001 * 119.54745 * 180.02562 * 16 12 11 46 46 H 1.08999 * 109.53344 * 186.67065 * 18 6 5 47 47 H 1.09000 * 109.67750 * 66.36561 * 18 6 5 48 48 H 1.09004 * 109.47132 * 304.99754 * 21 19 2 49 49 H 1.09002 * 109.47290 * 64.99337 * 21 19 2 50 50 H 0.97006 * 119.99654 * 359.97438 * 22 21 19 51 51 H 0.96999 * 119.99360 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5713 -0.6886 1.2644 6 7 4.0707 -1.2501 0.0018 7 6 4.9644 -2.2589 0.0048 8 8 5.2638 -2.8084 -1.0369 9 6 5.5817 -2.6980 1.2782 10 6 6.3479 -3.8611 1.3094 11 6 6.9240 -4.2558 2.5065 12 6 6.7040 -3.4794 3.6337 13 6 7.3059 -3.8731 4.9580 14 6 6.8624 -3.0912 6.1960 15 6 8.2646 -2.8820 5.6208 16 6 5.9259 -2.3376 3.5308 17 7 5.3959 -1.9828 2.3805 18 6 3.5714 -0.6887 -1.2641 19 6 2.0399 -0.7209 -1.2500 20 1 1.6978 -1.7557 -1.2382 21 6 1.5022 -0.0195 -2.4989 22 7 1.8912 -0.7778 -3.6905 23 6 1.5192 -0.3389 -4.9331 24 1 0.9387 0.5662 -5.0347 25 6 1.8882 -1.0572 -6.0622 26 7 2.5952 -2.1604 -5.9383 27 14 1.3801 -0.4587 -7.7572 28 1 2.4259 0.4474 -8.2963 29 1 1.2178 -1.6227 -8.6651 30 1 0.0927 0.2748 -7.6579 31 1 -0.3633 0.5144 0.8897 32 1 -0.3633 0.5133 -0.8903 33 1 -0.3633 -1.0276 0.0005 34 1 1.6978 -1.7557 1.2384 35 1 1.6572 -0.2207 2.1399 36 1 3.9143 0.3409 1.3675 37 1 3.9416 -1.2824 2.1001 38 1 6.4944 -4.4446 0.4124 39 1 7.5267 -5.1502 2.5609 40 1 7.5155 -4.9356 5.0818 41 1 6.1355 -2.2916 6.0526 42 1 6.7799 -3.6391 7.1346 43 1 9.1047 -3.2924 6.1812 44 1 8.4604 -1.9453 5.0989 45 1 5.7528 -1.7302 4.4069 46 1 3.9417 -1.2847 -2.0982 47 1 3.9143 0.3405 -1.3698 48 1 0.4151 0.0381 -2.4437 49 1 1.9168 0.9869 -2.5574 50 1 2.4123 -1.5909 -3.5992 51 1 2.8527 -2.6625 -6.7273 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133278238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:48 Heat of formation + Delta-G solvation = 49.455672 kcal Electronic energy + Delta-G solvation = -30036.426202 eV Core-core repulsion = 26130.180033 eV Total energy + Delta-G solvation = -3906.246170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15995 -39.66567 -37.97853 -37.33292 -34.92726 -33.70689 -32.77567 -31.79786 -31.27942 -29.65186 -28.15884 -26.02135 -24.89786 -24.36041 -23.09439 -23.04238 -22.76237 -21.26061 -21.09347 -20.32891 -19.32767 -17.55752 -17.37745 -16.89193 -16.16818 -15.76327 -15.32438 -15.21478 -15.05671 -14.76121 -14.48975 -14.24820 -13.96824 -13.77885 -13.63891 -13.34892 -13.26517 -12.98575 -12.75235 -12.48311 -12.42585 -12.21784 -12.00027 -11.74775 -11.56892 -11.50722 -11.36447 -10.94363 -10.89867 -10.83582 -10.69265 -10.54873 -10.26434 -10.13127 -10.06906 -10.01636 -9.89830 -9.53659 -9.17177 -8.97526 -8.77721 -8.33348 -6.80885 -5.65205 -2.94477 0.36759 0.88133 2.64252 3.07154 3.32822 3.50092 3.54433 3.56714 3.67154 3.83615 4.06747 4.29245 4.40570 4.44181 4.52909 4.59430 4.66553 4.90791 4.93153 5.00743 5.06630 5.07675 5.11815 5.31473 5.34757 5.40741 5.49886 5.54147 5.58153 5.66382 5.68477 5.76917 5.78472 5.81201 5.84958 5.91850 6.06780 6.07563 6.11793 6.15956 6.27430 6.33325 6.43239 6.44005 6.56645 6.66249 6.82851 6.90905 6.99655 7.37065 7.63800 7.78708 8.29646 8.52679 9.63455 10.22512 10.56837 11.57168 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.002394 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.998093 B =11693.501608 C =13003.558677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.129 4.129 5 C 0.072 3.928 6 N -0.588 5.588 7 C 0.562 3.438 8 O -0.524 6.524 9 C 0.083 3.917 10 C -0.106 4.106 11 C -0.074 4.074 12 C -0.086 4.086 13 C -0.120 4.120 14 C -0.174 4.174 15 C -0.166 4.166 16 C 0.088 3.912 17 N -0.442 5.442 18 C 0.118 3.882 19 C -0.100 4.100 20 H 0.073 0.927 21 C 0.159 3.841 22 N -0.733 5.733 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.015 4.015 26 N -0.930 5.930 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.161 0.839 46 H 0.102 0.898 47 H 0.067 0.933 48 H 0.027 0.973 49 H 0.018 0.982 50 H 0.385 0.615 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.449 -1.432 29.415 30.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.167 4.167 5 C -0.051 4.051 6 N -0.319 5.319 7 C 0.348 3.652 8 O -0.399 6.399 9 C -0.055 4.055 10 C -0.126 4.126 11 C -0.100 4.100 12 C -0.088 4.088 13 C -0.139 4.139 14 C -0.211 4.211 15 C -0.203 4.203 16 C -0.071 4.071 17 N -0.154 5.154 18 C -0.004 4.004 19 C -0.119 4.119 20 H 0.091 0.909 21 C 0.031 3.969 22 N -0.378 5.378 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.211 4.211 26 N -0.578 5.578 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.209 1.209 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.178 0.822 46 H 0.121 0.879 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.036 0.964 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.020 -0.873 28.606 29.721 hybrid contribution 0.339 -0.651 -0.912 1.171 sum 8.358 -1.524 27.693 28.967 Atomic orbital electron populations 1.21885 0.95193 1.01831 1.01552 1.21119 0.95762 0.99356 0.94238 0.91218 1.22024 0.95767 1.00974 0.97938 1.22961 0.93395 1.00641 0.88074 1.48053 1.41395 1.34018 1.08466 1.17898 0.80005 0.80230 0.87092 1.90861 1.62443 1.54634 1.32001 1.21352 0.97809 0.93552 0.92748 1.22165 0.94953 0.95999 0.99493 1.21440 0.97681 0.99594 0.91291 1.20308 0.97818 0.95982 0.94699 1.20979 1.04446 0.98388 0.90043 1.23095 0.98156 1.03020 0.96786 1.23069 0.93643 1.00564 1.03065 1.22843 0.93738 0.94624 0.95847 1.67634 1.18540 1.30391 0.98794 1.21842 0.93924 0.99023 0.85572 1.21684 0.94353 1.00725 0.95167 0.90852 1.20729 0.96815 0.94013 0.85386 1.42428 1.65358 1.29154 1.00814 1.19202 1.27753 1.06274 0.83826 0.91275 1.24761 1.00968 0.97565 0.97779 1.69683 1.42495 1.17224 1.28420 0.86210 0.77974 0.77411 0.84708 1.21793 1.21848 1.20852 0.93318 0.91747 0.92883 0.92036 0.91182 0.92116 0.84028 0.83053 0.84002 0.86436 0.88094 0.88031 0.88112 0.88341 0.82192 0.87926 0.91472 0.95524 0.96430 0.78105 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.82 37.16 0.33 -1.56 16 2 C -0.09 -1.17 2.23 -90.58 -0.20 -1.37 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.54 5.36 -26.61 -0.14 -1.68 16 5 C 0.07 0.90 5.88 -3.71 -0.02 0.88 16 6 N -0.59 -9.41 2.98 -173.53 -0.52 -9.93 16 7 C 0.56 9.62 7.66 -12.18 -0.09 9.52 16 8 O -0.52 -10.96 15.81 5.35 0.08 -10.88 16 9 C 0.08 1.11 6.58 -83.01 -0.55 0.56 16 10 C -0.11 -1.20 9.63 -39.05 -0.38 -1.58 16 11 C -0.07 -0.62 9.88 -39.31 -0.39 -1.01 16 12 C -0.09 -0.66 5.63 -104.36 -0.59 -1.24 16 13 C -0.12 -0.63 6.06 -91.78 -0.56 -1.19 16 14 C -0.17 -0.71 9.87 -26.73 -0.26 -0.98 16 15 C -0.17 -0.74 10.17 -26.74 -0.27 -1.02 16 16 C 0.09 0.74 10.47 -17.56 -0.18 0.56 16 17 N -0.44 -4.98 6.12 -9.79 -0.06 -5.04 16 18 C 0.12 2.14 5.54 -3.56 -0.02 2.12 16 19 C -0.10 -1.75 1.92 -90.50 -0.17 -1.92 16 20 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 21 C 0.16 3.31 5.41 -4.04 -0.02 3.29 16 22 N -0.73 -19.45 5.38 -59.91 -0.32 -19.77 16 23 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 24 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 25 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 26 N -0.93 -29.51 13.06 55.49 0.72 -28.78 16 27 Si 0.91 23.23 29.55 -169.99 -5.02 18.20 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 29 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 30 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.89 6.29 -51.93 -0.33 0.56 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.14 1.67 4.00 -85.10 -0.34 1.33 16 38 H 0.15 1.75 7.67 -52.49 -0.40 1.35 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.37 6.20 -51.93 -0.32 0.05 16 42 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.16 0.92 6.03 -52.49 -0.32 0.61 16 46 H 0.10 2.27 6.23 -51.93 -0.32 1.95 16 47 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.03 0.56 6.14 -51.93 -0.32 0.24 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.38 10.96 6.90 -40.82 -0.28 10.67 16 51 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 400.33 15.07 6.03 6.03 Total: -1.00 -34.60 400.33 -10.95 -45.55 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.10 Total: 8.86 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.77 Total: -4.25 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -0.18 Total: -63.52 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.60 -10.95 -45.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133278238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.003 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds