Wall clock time and date at job start Wed Apr 1 2020 03:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.44949 * 2 1 4 4 C 1.53043 * 109.45478 * 119.96552 * 2 1 3 5 5 C 1.53194 * 109.31141 * 181.38621 * 4 2 1 6 6 N 1.46929 * 108.88954 * 305.29169 * 5 4 2 7 7 C 1.34774 * 120.63109 * 233.67324 * 6 5 4 8 8 O 1.21516 * 120.00124 * 172.27592 * 7 6 5 9 9 C 1.48176 * 119.99857 * 352.27639 * 7 6 5 10 10 C 1.39313 * 119.72008 * 170.49650 * 9 7 6 11 11 C 1.38594 * 119.05493 * 179.70879 * 10 9 7 12 12 C 1.38623 * 118.48821 * 0.55428 * 11 10 9 13 13 C 1.50693 * 120.32519 * 179.75343 * 12 11 10 14 14 C 1.52999 * 117.50107 * 188.59987 * 13 12 11 15 15 C 1.52993 * 117.50323 * 119.97516 * 13 12 11 16 16 C 1.38568 * 119.35278 * 359.72366 * 12 11 10 17 17 N 1.31523 * 120.90111 * 359.97438 * 16 12 11 18 18 C 1.47206 * 118.55600 * 53.54122 * 6 5 4 19 19 C 1.53037 * 109.45892 * 240.02854 * 2 1 3 20 20 H 1.09000 * 109.49964 * 298.56961 * 19 2 1 21 21 C 1.52999 * 109.49719 * 58.63628 * 19 2 1 22 22 N 1.46502 * 109.47293 * 184.99767 * 21 19 2 23 23 C 1.36930 * 119.99943 * 179.97438 * 22 21 19 24 24 H 1.08001 * 120.00570 * 359.97438 * 23 22 21 25 25 C 1.38817 * 119.99901 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99885 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99948 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46961 * 90.00639 * 27 25 23 29 29 H 1.48507 * 109.47095 * 210.00261 * 27 25 23 30 30 H 1.48498 * 109.47056 * 330.00265 * 27 25 23 31 31 H 1.09003 * 109.47127 * 300.03910 * 1 2 3 32 32 H 1.08999 * 109.46692 * 60.03672 * 1 2 3 33 33 H 1.08996 * 109.47067 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.50159 * 61.43611 * 4 2 1 35 35 H 1.09002 * 109.49869 * 301.33326 * 4 2 1 36 36 H 1.09005 * 109.58755 * 65.14773 * 5 4 2 37 37 H 1.09000 * 109.59008 * 185.43235 * 5 4 2 38 38 H 1.08001 * 120.47019 * 359.97438 * 10 9 7 39 39 H 1.07991 * 120.75393 * 180.27755 * 11 10 9 40 40 H 1.09002 * 115.54926 * 334.30066 * 13 12 11 41 41 H 1.09004 * 117.50087 * 359.97438 * 14 13 12 42 42 H 1.09001 * 117.50622 * 145.01492 * 14 13 12 43 43 H 1.09004 * 117.50151 * 214.97709 * 15 13 12 44 44 H 1.09002 * 117.50133 * 359.97289 * 15 13 12 45 45 H 1.08001 * 119.54745 * 180.02562 * 16 12 11 46 46 H 1.08999 * 109.53344 * 186.67065 * 18 6 5 47 47 H 1.09000 * 109.67750 * 66.36561 * 18 6 5 48 48 H 1.09004 * 109.47132 * 304.99754 * 21 19 2 49 49 H 1.09002 * 109.47290 * 64.99337 * 21 19 2 50 50 H 0.97006 * 119.99654 * 359.97438 * 22 21 19 51 51 H 0.96999 * 119.99360 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5713 -0.6886 1.2644 6 7 4.0707 -1.2501 0.0018 7 6 4.9644 -2.2589 0.0048 8 8 5.2638 -2.8084 -1.0369 9 6 5.5817 -2.6980 1.2782 10 6 6.3479 -3.8611 1.3094 11 6 6.9240 -4.2558 2.5065 12 6 6.7040 -3.4794 3.6337 13 6 7.3059 -3.8731 4.9580 14 6 6.8624 -3.0912 6.1960 15 6 8.2646 -2.8820 5.6208 16 6 5.9259 -2.3376 3.5308 17 7 5.3959 -1.9828 2.3805 18 6 3.5714 -0.6887 -1.2641 19 6 2.0399 -0.7209 -1.2500 20 1 1.6978 -1.7557 -1.2382 21 6 1.5022 -0.0195 -2.4989 22 7 1.8912 -0.7778 -3.6905 23 6 1.5192 -0.3389 -4.9331 24 1 0.9387 0.5662 -5.0347 25 6 1.8882 -1.0572 -6.0622 26 7 2.5952 -2.1604 -5.9383 27 14 1.3801 -0.4587 -7.7572 28 1 2.4259 0.4474 -8.2963 29 1 1.2178 -1.6227 -8.6651 30 1 0.0927 0.2748 -7.6579 31 1 -0.3633 0.5144 0.8897 32 1 -0.3633 0.5133 -0.8903 33 1 -0.3633 -1.0276 0.0005 34 1 1.6978 -1.7557 1.2384 35 1 1.6572 -0.2207 2.1399 36 1 3.9143 0.3409 1.3675 37 1 3.9416 -1.2824 2.1001 38 1 6.4944 -4.4446 0.4124 39 1 7.5267 -5.1502 2.5609 40 1 7.5155 -4.9356 5.0818 41 1 6.1355 -2.2916 6.0526 42 1 6.7799 -3.6391 7.1346 43 1 9.1047 -3.2924 6.1812 44 1 8.4604 -1.9453 5.0989 45 1 5.7528 -1.7302 4.4069 46 1 3.9417 -1.2847 -2.0982 47 1 3.9143 0.3405 -1.3698 48 1 0.4151 0.0381 -2.4437 49 1 1.9168 0.9869 -2.5574 50 1 2.4123 -1.5909 -3.5992 51 1 2.8527 -2.6625 -6.7273 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133278238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:47 Heat of formation + Delta-G solvation = 28.646781 kcal Electronic energy + Delta-G solvation = -30037.328544 eV Core-core repulsion = 26130.180033 eV Total energy + Delta-G solvation = -3907.148511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.09914 -40.75123 -39.20224 -37.96980 -36.64052 -35.17989 -33.63484 -33.49339 -32.21384 -31.33085 -29.32075 -27.55408 -26.07451 -25.13039 -24.89494 -24.04507 -23.10357 -22.58485 -21.94526 -21.45122 -20.58642 -19.17597 -18.48203 -18.19569 -17.10214 -16.76007 -16.67574 -16.47692 -16.05874 -15.82100 -15.59316 -15.47653 -15.32429 -15.17893 -14.78049 -14.58695 -14.37536 -14.30547 -14.12012 -13.97210 -13.58157 -13.05245 -12.96754 -12.78361 -12.75958 -12.64282 -12.57789 -12.29249 -12.17132 -12.05696 -11.96604 -11.91429 -11.80726 -11.42663 -11.41164 -11.24035 -11.18946 -10.95142 -10.81588 -9.93980 -9.92024 -9.59906 -9.00988 -7.94887 -5.25598 -0.49074 0.14710 1.43785 1.47424 1.55805 1.58183 1.85633 2.54650 2.61610 2.94372 3.10834 3.37495 3.50454 3.56473 3.68379 3.81785 3.84879 3.86388 3.89013 4.00005 4.09307 4.13914 4.17130 4.24780 4.31213 4.33247 4.51041 4.59660 4.61588 4.67194 4.74998 4.79385 4.87379 4.91278 4.94494 4.95246 5.05457 5.06999 5.10423 5.11196 5.17505 5.22492 5.26885 5.30682 5.31853 5.43060 5.47379 5.48863 5.56545 5.76726 6.25355 6.31773 6.60835 7.02622 7.30425 8.06830 8.29715 9.28758 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.002394 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.998093 B =11693.501608 C =13003.558677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.083 0.917 4 C -0.121 4.121 5 C 0.069 3.931 6 N -0.587 5.587 7 C 0.552 3.448 8 O -0.582 6.582 9 C 0.055 3.945 10 C -0.116 4.116 11 C -0.071 4.071 12 C -0.069 4.069 13 C -0.131 4.131 14 C -0.166 4.166 15 C -0.165 4.165 16 C 0.089 3.911 17 N -0.448 5.448 18 C 0.124 3.876 19 C -0.086 4.086 20 H 0.047 0.953 21 C 0.158 3.842 22 N -0.748 5.748 23 C -0.244 4.244 24 H 0.080 0.920 25 C -0.083 4.083 26 N -0.973 5.973 27 Si 0.979 3.021 28 H -0.286 1.286 29 H -0.296 1.296 30 H -0.265 1.265 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.157 0.843 38 H 0.137 0.863 39 H 0.171 0.829 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.194 0.806 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.036 0.964 49 H 0.024 0.976 50 H 0.369 0.631 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.149 -0.036 33.452 34.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.159 4.159 5 C -0.052 4.052 6 N -0.317 5.317 7 C 0.340 3.660 8 O -0.462 6.462 9 C -0.081 4.081 10 C -0.137 4.137 11 C -0.096 4.096 12 C -0.071 4.071 13 C -0.150 4.150 14 C -0.202 4.202 15 C -0.202 4.202 16 C -0.071 4.071 17 N -0.159 5.159 18 C 0.002 3.998 19 C -0.106 4.106 20 H 0.066 0.934 21 C 0.032 3.968 22 N -0.391 5.391 23 C -0.376 4.376 24 H 0.098 0.902 25 C -0.274 4.274 26 N -0.624 5.624 27 Si 0.807 3.193 28 H -0.214 1.214 29 H -0.223 1.223 30 H -0.189 1.189 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.173 0.827 38 H 0.155 0.845 39 H 0.188 0.812 40 H 0.149 0.851 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.112 0.888 45 H 0.210 0.790 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.042 0.958 50 H 0.201 0.799 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.679 0.581 32.700 33.594 hybrid contribution 0.502 -1.076 -1.968 2.299 sum 8.181 -0.495 30.731 31.805 Atomic orbital electron populations 1.21853 0.94144 1.01619 1.02476 1.21115 0.96540 0.99527 0.92659 0.89901 1.22011 0.95013 1.00536 0.98342 1.23272 0.93955 1.01402 0.86582 1.48177 1.41032 1.33753 1.08776 1.18598 0.79654 0.79713 0.88052 1.90812 1.64361 1.56593 1.34433 1.20780 1.00089 0.95243 0.91966 1.22170 0.95458 0.95587 1.00484 1.21736 0.97152 1.00558 0.90147 1.20637 0.96076 0.94839 0.95580 1.21059 1.05459 0.99448 0.89045 1.23229 0.97852 1.02675 0.96472 1.23135 0.94351 0.99917 1.02747 1.23403 0.92957 0.95167 0.95537 1.67432 1.19336 1.30243 0.98921 1.21530 0.94471 0.98223 0.85608 1.21532 0.93615 0.99447 0.95967 0.93425 1.20914 0.97238 0.93822 0.84874 1.42690 1.65192 1.29127 1.02057 1.19679 1.26779 1.06192 0.84938 0.90205 1.25704 1.01672 0.97986 1.02079 1.69886 1.44457 1.18907 1.29143 0.85058 0.78198 0.76701 0.79302 1.21353 1.22278 1.18949 0.90142 0.93020 0.93694 0.93164 0.87328 0.90737 0.82705 0.84514 0.81154 0.85114 0.87444 0.86755 0.86968 0.88849 0.78983 0.92972 0.90945 0.94667 0.95811 0.79911 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.82 71.98 0.63 -2.76 16 2 C -0.08 -2.05 2.23 -10.76 -0.02 -2.08 16 3 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.12 -2.62 5.36 30.67 0.16 -2.46 16 5 C 0.07 1.64 5.88 86.36 0.51 2.15 16 6 N -0.59 -19.75 2.98 -821.21 -2.45 -22.20 16 7 C 0.55 20.46 7.66 86.88 0.67 21.13 16 8 O -0.58 -27.21 15.81 -3.77 -0.06 -27.27 16 9 C 0.05 1.52 6.58 41.91 0.28 1.80 16 10 C -0.12 -2.76 9.63 22.61 0.22 -2.54 16 11 C -0.07 -1.08 9.88 22.45 0.22 -0.86 16 12 C -0.07 -0.87 5.63 -19.70 -0.11 -0.98 16 13 C -0.13 -0.90 6.06 -11.54 -0.07 -0.97 16 14 C -0.17 -0.67 9.87 30.59 0.30 -0.37 16 15 C -0.16 -0.88 10.17 30.59 0.31 -0.56 16 16 C 0.09 1.25 10.47 84.82 0.89 2.14 16 17 N -0.45 -9.57 6.12 -184.90 -1.13 -10.70 16 18 C 0.12 4.86 5.54 86.31 0.48 5.33 16 19 C -0.09 -3.13 1.92 -10.72 -0.02 -3.15 16 20 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 21 C 0.16 6.78 5.41 86.38 0.47 7.25 16 22 N -0.75 -41.63 5.38 -343.44 -1.85 -43.48 16 23 C -0.24 -14.54 9.99 84.04 0.84 -13.70 16 24 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 25 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 26 N -0.97 -64.65 13.06 21.65 0.28 -64.37 16 27 Si 0.98 48.84 29.55 68.60 2.03 50.86 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 29 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 30 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.35 6.29 -2.39 -0.02 1.33 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.16 3.40 4.00 -67.88 -0.27 3.12 16 38 H 0.14 3.55 7.67 -2.91 -0.02 3.53 16 39 H 0.17 1.55 8.06 -2.92 -0.02 1.52 16 40 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.11 0.30 6.20 -2.39 -0.01 0.28 16 42 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 44 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.19 1.40 6.03 -2.91 -0.02 1.38 16 46 H 0.05 2.57 6.23 -2.39 -0.01 2.56 16 47 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.04 1.48 6.14 -2.38 -0.01 1.46 16 49 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.37 22.63 6.90 -92.70 -0.64 21.99 16 51 H 0.25 16.05 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -81.38 400.33 3.08 -78.30 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.04 Total: 34.10 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 6.22 Total: 4.75 kcal Atomic # 7 Polarization: -135.60 SS G_CDS: -5.15 Total: -140.75 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.06 Total: -27.27 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.86 kcal Total: -81.38 3.08 -78.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133278238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.949 kcal (2) G-P(sol) polarization free energy of solvation -81.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds