Wall clock time and date at job start Wed Apr 1 2020 02:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09003 * 109.45470 * 185.80868 * 3 2 1 5 5 N 1.46920 * 109.45792 * 305.77809 * 3 2 1 6 6 C 1.38094 * 110.99788 * 305.11019 * 5 3 2 7 7 N 1.32264 * 119.90517 * 330.17056 * 6 5 3 8 8 C 1.31973 * 121.86456 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.27558 * 179.97438 * 8 7 6 10 10 C 1.38688 * 121.44660 * 359.97438 * 8 7 6 11 11 C 1.38003 * 119.62444 * 0.02562 * 10 8 7 12 12 C 1.40997 * 118.28581 * 0.25407 * 11 10 8 13 13 C 1.41018 * 120.70865 * 179.75099 * 12 11 10 14 14 H 1.08007 * 119.99972 * 207.83533 * 13 12 11 15 15 C 1.39945 * 120.00129 * 27.82913 * 13 12 11 16 16 N 1.30873 * 119.99751 * 9.55515 * 15 13 12 17 17 Si 1.86796 * 120.00082 * 189.54866 * 15 13 12 18 18 H 1.48491 * 109.47520 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47033 * 120.00246 * 17 15 13 20 20 H 1.48502 * 109.47332 * 239.99938 * 17 15 13 21 21 C 1.46854 * 111.16078 * 181.04672 * 5 3 2 22 22 C 1.53047 * 109.59859 * 297.91250 * 21 5 3 23 23 C 1.53202 * 109.21893 * 59.54143 * 22 21 5 24 24 C 1.52641 * 109.43787 * 65.85965 * 3 2 1 25 25 C 1.54126 * 109.82996 * 60.75435 * 24 3 2 26 26 C 1.54707 * 101.68135 * 215.58263 * 25 24 3 27 27 C 1.51316 * 104.20422 * 24.49469 * 26 25 24 28 28 O 1.21286 * 124.94444 * 163.80249 * 27 26 25 29 29 N 1.34529 * 110.10392 * 343.80126 * 27 26 25 30 30 H 1.09007 * 109.46728 * 282.63617 * 1 2 3 31 31 H 1.09004 * 109.46690 * 42.63126 * 1 2 3 32 32 H 1.08994 * 109.47263 * 162.63269 * 1 2 3 33 33 H 1.08998 * 109.46631 * 240.00359 * 2 1 3 34 34 H 1.08997 * 109.46734 * 120.00556 * 2 1 3 35 35 H 1.09001 * 109.47418 * 269.97836 * 9 8 7 36 36 H 1.08999 * 109.47064 * 29.98149 * 9 8 7 37 37 H 1.09000 * 109.46909 * 149.98168 * 9 8 7 38 38 H 1.07991 * 120.18388 * 180.02562 * 10 8 7 39 39 H 1.07996 * 120.85815 * 179.97438 * 11 10 8 40 40 H 0.96997 * 119.99543 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.44797 * 57.94939 * 21 5 3 42 42 H 1.08999 * 109.45209 * 177.87421 * 21 5 3 43 43 H 1.08994 * 109.50994 * 299.62204 * 22 21 5 44 44 H 1.08999 * 109.55499 * 179.49018 * 22 21 5 45 45 H 1.08997 * 109.51585 * 183.07854 * 23 22 21 46 46 H 1.08994 * 109.52199 * 62.89986 * 23 22 21 47 47 H 1.09003 * 110.98654 * 333.67383 * 25 24 3 48 48 H 1.08997 * 110.98869 * 97.48018 * 25 24 3 49 49 H 1.08991 * 110.48606 * 143.17883 * 26 25 24 50 50 H 1.09003 * 110.47970 * 265.68908 * 26 25 24 51 51 H 0.97008 * 124.41492 * 179.85080 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1251 1.4439 -0.1040 5 7 1.4396 2.1739 -1.1239 6 6 1.6749 1.5240 -2.3194 7 7 2.7708 0.7993 -2.4715 8 6 3.0340 0.1619 -3.5967 9 6 4.3008 -0.6469 -3.7066 10 6 2.1703 0.2200 -4.6803 11 6 1.0085 0.9590 -4.5877 12 6 0.7437 1.6394 -3.3814 13 6 -0.4256 2.4135 -3.2329 14 1 -0.4338 3.2548 -2.5557 15 6 -1.5752 2.0918 -3.9632 16 7 -1.6297 0.9717 -4.6379 17 14 -3.0320 3.2609 -3.9748 18 1 -2.7202 4.4486 -3.1399 19 1 -3.3076 3.6945 -5.3681 20 1 -4.2262 2.5694 -3.4263 21 6 1.9239 3.5594 -1.1740 22 6 1.5124 4.2936 0.1043 23 6 2.1145 3.5739 1.3153 24 6 1.6544 2.1176 1.3135 25 6 2.2971 1.3664 2.4959 26 6 1.2005 1.4917 3.5799 27 6 -0.0775 1.6893 2.7942 28 8 -1.1964 1.5536 3.2420 29 7 0.2083 2.0374 1.5265 30 1 -0.3633 0.2248 1.0029 31 1 -0.3633 0.7561 -0.6961 32 1 -0.3633 -0.9807 -0.3067 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 5.1038 -0.0148 -4.0857 36 1 4.5736 -1.0302 -2.7233 37 1 4.1413 -1.4808 -4.3902 38 1 2.4057 -0.3100 -5.5912 39 1 0.3220 1.0183 -5.4192 40 1 -2.4267 0.7486 -5.1437 41 1 3.0105 3.5611 -1.2597 42 1 1.4912 4.0641 -2.0377 43 1 0.4256 4.2988 0.1872 44 1 1.8799 5.3192 0.0704 45 1 1.7799 4.0604 2.2315 46 1 3.2023 3.6122 1.2580 47 1 2.4781 0.3218 2.2428 48 1 3.2182 1.8546 2.8142 49 1 1.1457 0.5798 4.1743 50 1 1.3937 2.3524 4.2203 51 1 -0.4572 2.2127 0.8428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165921595.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:39 Heat of formation + Delta-G solvation = 9.731102 kcal Electronic energy + Delta-G solvation = -33079.352950 eV Core-core repulsion = 29171.384193 eV Total energy + Delta-G solvation = -3907.968756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.25348 -39.12023 -37.61080 -35.53284 -34.26372 -33.68816 -31.86102 -31.28614 -30.75509 -29.49222 -28.54621 -27.72171 -25.05496 -24.39134 -23.70599 -22.09257 -21.14148 -20.95960 -20.21092 -19.88150 -19.02384 -17.35087 -16.68501 -16.09946 -15.78716 -15.59989 -15.10959 -14.61660 -14.27605 -14.16510 -13.97773 -13.86077 -13.69841 -13.30793 -13.08084 -12.88222 -12.57797 -12.54114 -12.44180 -12.08561 -11.99757 -11.83602 -11.70795 -11.54087 -11.44697 -11.38096 -11.01421 -10.96098 -10.94787 -10.75833 -10.65298 -10.50454 -10.33469 -10.15643 -9.87749 -9.71067 -9.57894 -9.38365 -8.61006 -8.34879 -8.22529 -7.78056 -7.10208 -6.81139 -4.42276 2.53590 2.85493 2.85967 3.03904 3.08106 3.13667 3.70657 3.86315 4.28631 4.53903 4.54811 4.62608 4.80259 5.05748 5.11740 5.22297 5.33415 5.44419 5.57643 5.61255 5.66936 5.68654 5.77334 5.82304 5.89501 5.97164 5.98267 6.02135 6.03681 6.09226 6.19154 6.29154 6.33179 6.40576 6.45350 6.47724 6.50572 6.57192 6.71626 6.82861 6.90428 6.95155 7.07233 7.11005 7.19274 7.25546 7.43627 7.55134 7.63948 7.78078 7.97344 8.21128 8.55029 8.58312 8.68631 8.85396 9.53254 10.08905 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.005600 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.040715 B = 4999.208869 C = 6514.830617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C 0.100 3.900 4 H 0.060 0.940 5 N -0.444 5.444 6 C 0.178 3.822 7 N -0.491 5.491 8 C -0.002 4.002 9 C -0.073 4.073 10 C -0.153 4.153 11 C -0.129 4.129 12 C 0.083 3.917 13 C -0.420 4.420 14 H 0.086 0.914 15 C 0.070 3.930 16 N -0.796 5.796 17 Si 0.909 3.091 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.274 1.274 21 C 0.058 3.942 22 C -0.115 4.115 23 C -0.123 4.123 24 C 0.167 3.833 25 C -0.128 4.128 26 C -0.155 4.155 27 C 0.514 3.486 28 O -0.549 6.549 29 N -0.693 5.693 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.280 0.720 41 H 0.029 0.971 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.096 0.904 50 H 0.098 0.902 51 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.520 2.793 7.947 11.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.145 4.145 3 C -0.009 4.009 4 H 0.078 0.922 5 N -0.165 5.165 6 C -0.054 4.054 7 N -0.204 5.204 8 C -0.141 4.141 9 C -0.131 4.131 10 C -0.174 4.174 11 C -0.156 4.156 12 C 0.077 3.923 13 C -0.450 4.450 14 H 0.104 0.896 15 C -0.147 4.147 16 N -0.421 5.421 17 Si 0.734 3.266 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.069 4.069 22 C -0.153 4.153 23 C -0.161 4.161 24 C 0.079 3.921 25 C -0.167 4.167 26 C -0.195 4.195 27 C 0.300 3.700 28 O -0.428 6.428 29 N -0.349 5.349 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.105 0.895 49 H 0.114 0.886 50 H 0.116 0.884 51 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 6.919 2.535 8.859 11.524 hybrid contribution -0.725 0.447 -1.372 1.614 sum 6.194 2.982 7.488 10.165 Atomic orbital electron populations 1.22087 0.95457 1.01688 1.02063 1.21511 0.96912 0.94704 1.01366 1.21514 0.97409 0.93651 0.88320 0.92231 1.59330 1.55737 1.00748 1.00652 1.19305 0.93307 1.02468 0.90339 1.66735 1.18962 1.09308 1.25348 1.19994 0.98277 1.04915 0.90924 1.20271 0.94526 0.97530 1.00734 1.21411 0.96356 1.01548 0.98046 1.21691 0.95815 0.99853 0.98216 1.18008 0.92293 0.92271 0.89736 1.19458 0.94191 1.11786 1.19550 0.89574 1.25971 1.00478 0.94903 0.93378 1.69788 1.29106 1.20038 1.23190 0.86218 0.80468 0.81031 0.78861 1.18273 1.19941 1.19908 1.22131 0.97210 0.89510 0.98022 1.21589 1.01694 0.98102 0.93950 1.21946 1.00623 0.94617 0.98928 1.20786 0.80796 0.95009 0.95509 1.22778 0.97961 1.02317 0.93594 1.22339 0.94003 1.04491 0.98682 1.20807 0.90261 0.75837 0.83095 1.90731 1.25227 1.53193 1.73616 1.46487 1.08266 1.68064 1.12069 0.92989 0.89635 0.95017 0.90721 0.93184 0.93441 0.92868 0.93083 0.88667 0.85212 0.90860 0.95316 0.90186 0.91064 0.91737 0.91737 0.91079 0.89211 0.89503 0.88579 0.88360 0.73631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.26 37.16 0.31 -2.59 16 2 C -0.11 -1.86 5.06 -26.73 -0.14 -1.99 16 3 C 0.10 1.60 1.16 -67.89 -0.08 1.52 16 4 H 0.06 1.01 7.78 -51.93 -0.40 0.61 16 5 N -0.44 -8.10 2.57 -165.32 -0.43 -8.53 16 6 C 0.18 3.87 4.35 -155.02 -0.67 3.20 16 7 N -0.49 -10.58 7.53 -8.11 -0.06 -10.64 16 8 C 0.00 -0.04 6.79 -82.37 -0.56 -0.60 16 9 C -0.07 -1.24 10.15 36.01 0.37 -0.88 16 10 C -0.15 -3.37 9.69 -39.50 -0.38 -3.75 16 11 C -0.13 -3.12 8.77 -38.62 -0.34 -3.46 16 12 C 0.08 1.99 5.55 -106.47 -0.59 1.40 16 13 C -0.42 -9.95 8.43 -37.89 -0.32 -10.27 16 14 H 0.09 1.98 6.60 -52.48 -0.35 1.63 16 15 C 0.07 1.63 5.30 -17.32 -0.09 1.54 16 16 N -0.80 -19.30 10.76 55.55 0.60 -18.71 16 17 Si 0.91 17.95 29.57 -169.99 -5.03 12.92 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 21 C 0.06 0.96 5.00 -3.82 -0.02 0.94 16 22 C -0.12 -1.52 5.98 -26.60 -0.16 -1.68 16 23 C -0.12 -1.42 4.87 -26.77 -0.13 -1.55 16 24 C 0.17 2.16 0.47 -131.61 -0.06 2.10 16 25 C -0.13 -1.34 6.00 -25.24 -0.15 -1.49 16 26 C -0.15 -1.68 6.86 -26.68 -0.18 -1.87 16 27 C 0.51 7.81 7.28 -10.79 -0.08 7.74 16 28 O -0.55 -10.61 18.03 5.55 0.10 -10.51 16 29 N -0.69 -10.19 2.64 -47.27 -0.12 -10.31 16 30 H 0.05 0.92 4.94 -51.93 -0.26 0.66 16 31 H 0.08 1.82 6.25 -51.93 -0.32 1.49 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.52 6.25 -51.93 -0.32 1.20 16 34 H 0.05 0.76 5.91 -51.93 -0.31 0.45 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.13 3.25 6.21 -52.49 -0.33 2.92 16 40 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 1.45 7.12 -51.93 -0.37 1.08 16 43 H 0.07 1.01 7.78 -51.93 -0.40 0.61 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 47 H 0.09 0.97 5.73 -51.93 -0.30 0.67 16 48 H 0.09 0.72 7.85 -51.93 -0.41 0.31 16 49 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.42 6.97 7.49 -40.82 -0.31 6.66 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -27.08 379.98 -10.35 -37.43 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -7.85 Total: 14.33 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -3.28 Total: -11.70 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.01 Total: -48.19 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.10 Total: -10.51 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.08 -10.35 -37.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165921595.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.158 kcal (2) G-P(sol) polarization free energy of solvation -27.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds