Wall clock time and date at job start Wed Apr 1 2020 02:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09003 * 109.45470 * 185.80868 * 3 2 1 5 5 N 1.46920 * 109.45792 * 305.77809 * 3 2 1 6 6 C 1.38094 * 110.99788 * 305.11019 * 5 3 2 7 7 N 1.32264 * 119.90517 * 330.17056 * 6 5 3 8 8 C 1.31973 * 121.86456 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.27558 * 179.97438 * 8 7 6 10 10 C 1.38688 * 121.44660 * 359.97438 * 8 7 6 11 11 C 1.38003 * 119.62444 * 0.02562 * 10 8 7 12 12 C 1.40997 * 118.28581 * 0.25407 * 11 10 8 13 13 C 1.41018 * 120.70865 * 179.75099 * 12 11 10 14 14 H 1.08007 * 119.99972 * 207.83533 * 13 12 11 15 15 C 1.39945 * 120.00129 * 27.82913 * 13 12 11 16 16 N 1.30873 * 119.99751 * 9.55515 * 15 13 12 17 17 Si 1.86796 * 120.00082 * 189.54866 * 15 13 12 18 18 H 1.48491 * 109.47520 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47033 * 120.00246 * 17 15 13 20 20 H 1.48502 * 109.47332 * 239.99938 * 17 15 13 21 21 C 1.46854 * 111.16078 * 181.04672 * 5 3 2 22 22 C 1.53047 * 109.59859 * 297.91250 * 21 5 3 23 23 C 1.53202 * 109.21893 * 59.54143 * 22 21 5 24 24 C 1.52641 * 109.43787 * 65.85965 * 3 2 1 25 25 C 1.54126 * 109.82996 * 60.75435 * 24 3 2 26 26 C 1.54707 * 101.68135 * 215.58263 * 25 24 3 27 27 C 1.51316 * 104.20422 * 24.49469 * 26 25 24 28 28 O 1.21286 * 124.94444 * 163.80249 * 27 26 25 29 29 N 1.34529 * 110.10392 * 343.80126 * 27 26 25 30 30 H 1.09007 * 109.46728 * 282.63617 * 1 2 3 31 31 H 1.09004 * 109.46690 * 42.63126 * 1 2 3 32 32 H 1.08994 * 109.47263 * 162.63269 * 1 2 3 33 33 H 1.08998 * 109.46631 * 240.00359 * 2 1 3 34 34 H 1.08997 * 109.46734 * 120.00556 * 2 1 3 35 35 H 1.09001 * 109.47418 * 269.97836 * 9 8 7 36 36 H 1.08999 * 109.47064 * 29.98149 * 9 8 7 37 37 H 1.09000 * 109.46909 * 149.98168 * 9 8 7 38 38 H 1.07991 * 120.18388 * 180.02562 * 10 8 7 39 39 H 1.07996 * 120.85815 * 179.97438 * 11 10 8 40 40 H 0.96997 * 119.99543 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.44797 * 57.94939 * 21 5 3 42 42 H 1.08999 * 109.45209 * 177.87421 * 21 5 3 43 43 H 1.08994 * 109.50994 * 299.62204 * 22 21 5 44 44 H 1.08999 * 109.55499 * 179.49018 * 22 21 5 45 45 H 1.08997 * 109.51585 * 183.07854 * 23 22 21 46 46 H 1.08994 * 109.52199 * 62.89986 * 23 22 21 47 47 H 1.09003 * 110.98654 * 333.67383 * 25 24 3 48 48 H 1.08997 * 110.98869 * 97.48018 * 25 24 3 49 49 H 1.08991 * 110.48606 * 143.17883 * 26 25 24 50 50 H 1.09003 * 110.47970 * 265.68908 * 26 25 24 51 51 H 0.97008 * 124.41492 * 179.85080 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1251 1.4439 -0.1040 5 7 1.4396 2.1739 -1.1239 6 6 1.6749 1.5240 -2.3194 7 7 2.7708 0.7993 -2.4715 8 6 3.0340 0.1619 -3.5967 9 6 4.3008 -0.6469 -3.7066 10 6 2.1703 0.2200 -4.6803 11 6 1.0085 0.9590 -4.5877 12 6 0.7437 1.6394 -3.3814 13 6 -0.4256 2.4135 -3.2329 14 1 -0.4338 3.2548 -2.5557 15 6 -1.5752 2.0918 -3.9632 16 7 -1.6297 0.9717 -4.6379 17 14 -3.0320 3.2609 -3.9748 18 1 -2.7202 4.4486 -3.1399 19 1 -3.3076 3.6945 -5.3681 20 1 -4.2262 2.5694 -3.4263 21 6 1.9239 3.5594 -1.1740 22 6 1.5124 4.2936 0.1043 23 6 2.1145 3.5739 1.3153 24 6 1.6544 2.1176 1.3135 25 6 2.2971 1.3664 2.4959 26 6 1.2005 1.4917 3.5799 27 6 -0.0775 1.6893 2.7942 28 8 -1.1964 1.5536 3.2420 29 7 0.2083 2.0374 1.5265 30 1 -0.3633 0.2248 1.0029 31 1 -0.3633 0.7561 -0.6961 32 1 -0.3633 -0.9807 -0.3067 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 5.1038 -0.0148 -4.0857 36 1 4.5736 -1.0302 -2.7233 37 1 4.1413 -1.4808 -4.3902 38 1 2.4057 -0.3100 -5.5912 39 1 0.3220 1.0183 -5.4192 40 1 -2.4267 0.7486 -5.1437 41 1 3.0105 3.5611 -1.2597 42 1 1.4912 4.0641 -2.0377 43 1 0.4256 4.2988 0.1872 44 1 1.8799 5.3192 0.0704 45 1 1.7799 4.0604 2.2315 46 1 3.2023 3.6122 1.2580 47 1 2.4781 0.3218 2.2428 48 1 3.2182 1.8546 2.8142 49 1 1.1457 0.5798 4.1743 50 1 1.3937 2.3524 4.2203 51 1 -0.4572 2.2127 0.8428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165921595.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:37 Heat of formation + Delta-G solvation = -3.832708 kcal Electronic energy + Delta-G solvation = -33079.941121 eV Core-core repulsion = 29171.384193 eV Total energy + Delta-G solvation = -3908.556927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.45014 -40.64481 -39.01589 -36.87084 -36.00456 -34.98225 -33.29755 -32.50064 -32.27614 -30.93997 -29.85514 -29.34768 -26.47189 -25.54756 -25.27755 -23.50739 -22.61371 -22.25996 -21.63426 -21.13744 -20.21798 -19.14052 -17.97455 -17.39209 -17.24073 -17.06852 -16.48442 -16.16609 -15.68727 -15.52472 -15.37017 -15.18780 -14.84827 -14.60121 -14.48839 -14.25811 -13.97354 -13.83844 -13.70445 -13.41309 -13.38754 -13.24675 -13.15339 -13.04613 -12.78216 -12.72449 -12.59769 -12.43328 -12.26912 -12.13695 -11.91835 -11.86534 -11.69738 -11.64198 -11.23196 -11.14330 -11.04824 -10.77968 -10.17053 -10.01589 -9.63104 -9.45163 -8.72863 -8.56577 -6.23645 0.81029 1.09032 1.37840 1.48906 1.50087 1.71046 2.19361 2.56110 2.79869 3.01596 3.52579 3.57227 3.66451 3.81733 4.00598 4.06332 4.13205 4.20913 4.28167 4.38468 4.46432 4.47244 4.49633 4.58225 4.68215 4.73488 4.81327 4.87659 4.92862 4.94665 4.96303 4.97696 5.04303 5.06512 5.13562 5.15556 5.17552 5.19458 5.26114 5.31527 5.38471 5.41367 5.44911 5.47412 5.63628 5.82593 5.89775 6.01321 6.18056 6.26743 6.36968 6.46216 6.78738 6.89979 7.13617 7.37713 7.79005 8.35368 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.005600 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.040715 B = 4999.208869 C = 6514.830617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C 0.105 3.895 4 H 0.059 0.941 5 N -0.453 5.453 6 C 0.191 3.809 7 N -0.496 5.496 8 C -0.006 4.006 9 C -0.067 4.067 10 C -0.165 4.165 11 C -0.155 4.155 12 C 0.050 3.950 13 C -0.438 4.438 14 H 0.084 0.916 15 C 0.032 3.968 16 N -0.831 5.831 17 Si 0.972 3.028 18 H -0.255 1.255 19 H -0.268 1.268 20 H -0.277 1.277 21 C 0.062 3.938 22 C -0.109 4.109 23 C -0.116 4.116 24 C 0.166 3.834 25 C -0.119 4.119 26 C -0.142 4.142 27 C 0.504 3.496 28 O -0.599 6.599 29 N -0.697 5.697 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.014 0.986 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.283 0.717 41 H 0.028 0.972 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.123 0.877 49 H 0.109 0.891 50 H 0.127 0.873 51 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.990 3.588 10.569 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 C -0.004 4.004 4 H 0.077 0.923 5 N -0.174 5.174 6 C -0.042 4.042 7 N -0.209 5.209 8 C -0.145 4.145 9 C -0.125 4.125 10 C -0.186 4.186 11 C -0.181 4.181 12 C 0.045 3.955 13 C -0.469 4.469 14 H 0.102 0.898 15 C -0.182 4.182 16 N -0.458 5.458 17 Si 0.794 3.206 18 H -0.178 1.178 19 H -0.193 1.193 20 H -0.202 1.202 21 C -0.064 4.064 22 C -0.147 4.147 23 C -0.154 4.154 24 C 0.079 3.921 25 C -0.157 4.157 26 C -0.182 4.182 27 C 0.293 3.707 28 O -0.482 6.482 29 N -0.350 5.350 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.142 0.858 49 H 0.127 0.873 50 H 0.145 0.855 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 9.445 3.335 11.479 15.235 hybrid contribution -1.395 0.135 -2.211 2.618 sum 8.049 3.470 9.269 12.757 Atomic orbital electron populations 1.21944 0.96779 0.99570 1.01653 1.21457 0.95432 0.95914 1.01119 1.21543 0.96983 0.92806 0.89061 0.92305 1.59282 1.56467 1.01631 1.00014 1.19576 0.92376 1.01291 0.90940 1.66929 1.18768 1.09710 1.25486 1.20769 0.99332 1.04069 0.90288 1.20305 0.92647 0.97711 1.01798 1.21662 0.95960 1.01558 0.99385 1.21682 0.96729 1.01589 0.98149 1.18338 0.93345 0.93221 0.90629 1.19532 0.94778 1.12168 1.20374 0.89817 1.26659 1.02597 0.95992 0.92925 1.69861 1.29954 1.21507 1.24510 0.85286 0.77210 0.79148 0.78951 1.17795 1.19308 1.20230 1.22104 0.96811 0.88331 0.99198 1.21552 1.01006 0.99161 0.92949 1.21951 1.01776 0.92964 0.98726 1.20935 0.79948 0.96450 0.94741 1.22834 0.98966 1.02183 0.91674 1.22365 0.90934 1.06375 0.98479 1.21624 0.91100 0.74645 0.83331 1.90704 1.27626 1.55300 1.74524 1.46665 1.08941 1.67481 1.11886 0.91894 0.92667 0.96705 0.94027 0.90308 0.91716 0.92124 0.91350 0.86736 0.87081 0.90628 0.95328 0.92743 0.92534 0.89382 0.89488 0.88889 0.89408 0.85834 0.87274 0.85543 0.75292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 8.26 71.98 0.59 -4.84 16 2 C -0.10 -3.45 5.06 30.60 0.15 -3.30 16 3 C 0.10 3.19 1.16 44.79 0.05 3.24 16 4 H 0.06 1.85 7.78 -2.39 -0.02 1.83 16 5 N -0.45 -16.64 2.57 -676.95 -1.74 -18.38 16 6 C 0.19 8.52 4.35 134.05 0.58 9.10 16 7 N -0.50 -21.37 7.53 -179.56 -1.35 -22.72 16 8 C -0.01 -0.25 6.79 42.65 0.29 0.04 16 9 C -0.07 -2.14 10.15 71.24 0.72 -1.42 16 10 C -0.17 -7.44 9.69 22.32 0.22 -7.22 16 11 C -0.15 -7.88 8.77 22.89 0.20 -7.68 16 12 C 0.05 2.55 5.55 -21.06 -0.12 2.43 16 13 C -0.44 -21.95 8.43 23.37 0.20 -21.75 16 14 H 0.08 4.07 6.60 -2.91 -0.02 4.05 16 15 C 0.03 1.55 5.30 85.25 0.45 2.01 16 16 N -0.83 -42.74 10.76 21.83 0.23 -42.50 16 17 Si 0.97 38.38 29.57 68.60 2.03 40.41 16 18 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 19 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 20 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 21 C 0.06 2.03 5.00 86.33 0.43 2.46 16 22 C -0.11 -2.64 5.98 30.68 0.18 -2.46 16 23 C -0.12 -2.20 4.87 30.57 0.15 -2.05 16 24 C 0.17 3.81 0.47 3.79 0.00 3.81 16 25 C -0.12 -1.90 6.00 31.56 0.19 -1.71 16 26 C -0.14 -2.46 6.86 30.63 0.21 -2.25 16 27 C 0.50 14.41 7.28 87.89 0.64 15.05 16 28 O -0.60 -22.91 18.03 -3.05 -0.05 -22.96 16 29 N -0.70 -19.59 2.64 -421.98 -1.11 -20.70 16 30 H 0.06 2.24 4.94 -2.38 -0.01 2.23 16 31 H 0.05 2.46 6.25 -2.38 -0.01 2.44 16 32 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.04 1.69 6.25 -2.39 -0.01 1.68 16 34 H 0.08 2.21 5.91 -2.39 -0.01 2.20 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 38 H 0.11 4.55 8.06 -2.92 -0.02 4.53 16 39 H 0.11 5.97 6.21 -2.91 -0.02 5.95 16 40 H 0.28 13.43 8.30 -92.71 -0.77 12.66 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.05 2.03 7.12 -2.39 -0.02 2.01 16 43 H 0.06 1.55 7.78 -2.39 -0.02 1.54 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 1.45 8.13 -2.39 -0.02 1.43 16 47 H 0.09 1.48 5.73 -2.39 -0.01 1.47 16 48 H 0.12 1.19 7.85 -2.39 -0.02 1.17 16 49 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.41 13.65 7.49 -92.70 -0.69 12.96 16 Total: -1.00 -64.09 379.98 3.41 -60.67 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: 0.26 Total: 42.72 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 5.15 Total: -16.52 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -3.97 Total: -104.31 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -64.09 3.41 -60.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165921595.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.841 kcal (2) G-P(sol) polarization free energy of solvation -64.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds