Wall clock time and date at job start Wed Apr 1 2020 01:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46908 * 2 1 4 4 C 1.50693 * 109.47374 * 239.99980 * 2 1 3 5 5 O 1.21276 * 119.99999 * 94.49279 * 4 2 1 6 6 N 1.34784 * 119.99881 * 274.49344 * 4 2 1 7 7 C 1.47154 * 125.69029 * 5.29271 * 6 4 2 8 8 C 1.54370 * 106.43434 * 163.03243 * 7 6 4 9 9 C 1.55236 * 103.25628 * 28.59776 * 8 7 6 10 10 H 1.08996 * 111.87956 * 211.57551 * 9 8 7 11 11 C 1.52944 * 107.20762 * 89.55818 * 9 8 7 12 12 N 1.46711 * 109.75032 * 195.20891 * 11 9 8 13 13 C 1.39081 * 110.99742 * 190.33530 * 12 11 9 14 14 C 1.38748 * 119.65641 * 181.14121 * 13 12 11 15 15 C 1.40776 * 118.66919 * 179.97438 * 14 13 12 16 16 C 1.41556 * 120.99342 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00099 * 145.69469 * 16 15 14 18 18 C 1.40026 * 119.99773 * 325.70108 * 16 15 14 19 19 N 1.30744 * 120.00546 * 4.36486 * 18 16 15 20 20 Si 1.86804 * 119.99904 * 184.36635 * 18 16 15 21 21 H 1.48501 * 109.46962 * 59.99876 * 20 18 16 22 22 H 1.48502 * 109.47356 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47091 * 300.00136 * 20 18 16 24 24 C 1.41186 * 118.01539 * 0.02562 * 15 14 13 25 25 C 1.36560 * 119.14517 * 359.97438 * 24 15 14 26 26 N 1.32096 * 121.26838 * 359.72009 * 25 24 15 27 27 C 1.46567 * 110.11148 * 67.01524 * 12 11 9 28 28 C 1.51681 * 110.66751 * 297.28850 * 27 12 11 29 29 C 1.45892 * 125.68887 * 185.60329 * 6 4 2 30 30 H 1.08998 * 105.10225 * 289.66156 * 29 6 4 31 31 H 1.09000 * 109.46977 * 55.00137 * 1 2 3 32 32 H 1.09005 * 109.47267 * 174.99598 * 1 2 3 33 33 H 1.08998 * 109.47899 * 294.99950 * 1 2 3 34 34 H 1.09000 * 109.46561 * 119.99781 * 2 1 3 35 35 H 1.09001 * 109.47321 * 59.99703 * 3 2 1 36 36 H 1.09001 * 109.47145 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.47407 * 300.00081 * 3 2 1 38 38 H 1.08994 * 110.04495 * 282.41767 * 7 6 4 39 39 H 1.09004 * 110.04621 * 43.88982 * 7 6 4 40 40 H 1.09002 * 110.86235 * 270.08152 * 8 7 6 41 41 H 1.09005 * 110.65569 * 147.01721 * 8 7 6 42 42 H 1.09007 * 109.42317 * 75.12263 * 11 9 8 43 43 H 1.09002 * 109.37864 * 315.26570 * 11 9 8 44 44 H 1.07999 * 120.66369 * 0.02657 * 14 13 12 45 45 H 0.97001 * 120.00377 * 179.97438 * 19 18 16 46 46 H 1.07998 * 120.42937 * 180.02562 * 24 15 14 47 47 H 1.08001 * 119.36579 * 180.02562 * 25 24 15 48 48 H 1.08998 * 109.23956 * 176.98311 * 27 12 11 49 49 H 1.09002 * 109.20803 * 57.57426 * 27 12 11 50 50 H 1.09004 * 108.38121 * 283.56184 * 28 27 12 51 51 H 1.09003 * 108.39024 * 166.40801 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3121 -0.0757 -2.2253 6 7 2.1708 -2.0511 -1.2252 7 6 1.7679 -2.9515 -0.1333 8 6 1.7145 -4.3718 -0.7356 9 6 2.7623 -4.3129 -1.8795 10 1 2.4919 -4.9626 -2.7118 11 6 4.1097 -4.7186 -1.2802 12 7 5.1929 -4.3412 -2.1949 13 6 6.4020 -4.8985 -1.7924 14 6 7.5544 -4.6367 -2.5193 15 6 8.7669 -5.2110 -2.0930 16 6 9.9719 -4.9771 -2.7981 17 1 10.9069 -4.9100 -2.2619 18 6 9.9514 -4.8327 -4.1907 19 7 8.8114 -4.8285 -4.8309 20 14 11.5530 -4.6461 -5.1340 21 1 12.4018 -5.8438 -4.9099 22 1 11.2608 -4.5113 -6.5837 23 1 12.2695 -3.4356 -4.6582 24 6 8.7451 -6.0282 -0.9419 25 6 7.5614 -6.2288 -0.2910 26 7 6.4424 -5.6693 -0.7150 27 6 5.2913 -2.8816 -2.2845 28 6 4.0189 -2.2938 -2.8642 29 6 2.7510 -2.8510 -2.2985 30 1 2.0249 -2.8066 -3.1101 31 1 -0.3633 0.5894 -0.8418 32 1 -0.3634 -1.0238 -0.0896 33 1 -0.3635 0.4343 0.9313 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9563 -0.8899 38 1 2.5002 -2.9121 0.6730 39 1 0.7840 -2.6682 0.2408 40 1 0.7229 -4.5877 -1.1335 41 1 1.9991 -5.1159 0.0084 42 1 4.1268 -5.7972 -1.1234 43 1 4.2483 -4.2113 -0.3254 44 1 7.5220 -4.0042 -3.3941 45 1 8.7973 -4.7281 -5.7956 46 1 9.6529 -6.4880 -0.5802 47 1 7.5407 -6.8529 0.5902 48 1 6.1331 -2.6170 -2.9244 49 1 5.4550 -2.4713 -1.2880 50 1 4.0199 -2.4661 -3.9405 51 1 4.0280 -1.2174 -2.6926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166083219.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:33 Heat of formation + Delta-G solvation = -0.857856 kcal Electronic energy + Delta-G solvation = -31054.140112 eV Core-core repulsion = 27145.712185 eV Total energy + Delta-G solvation = -3908.427928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.96688 -39.22949 -38.07181 -35.94947 -34.68179 -33.96915 -32.54554 -31.81579 -30.48580 -28.58761 -28.30730 -27.41319 -25.98288 -24.94822 -23.64955 -22.83814 -22.14410 -21.22376 -20.34697 -19.43283 -18.39319 -17.54176 -17.04971 -16.48285 -15.79552 -15.46812 -15.26547 -15.01319 -14.62265 -14.40103 -14.24368 -14.02971 -13.92854 -13.44707 -13.42966 -13.23205 -12.90258 -12.69210 -12.54285 -12.48357 -12.24214 -12.18576 -12.01348 -11.87574 -11.52019 -11.43855 -11.35985 -11.29206 -11.19101 -11.10186 -10.91611 -10.81848 -10.29637 -10.27570 -10.15992 -10.02318 -9.55839 -9.37757 -8.82991 -8.56066 -8.08381 -7.87028 -6.92321 -6.65900 -4.60859 2.56423 2.71537 2.85623 2.91819 3.05314 3.07226 3.22875 3.91150 4.18376 4.31101 4.46975 4.58630 4.67066 4.71128 4.78736 4.88632 5.01304 5.14018 5.21153 5.32464 5.34516 5.38645 5.47284 5.50920 5.55586 5.58253 5.60097 5.67046 5.70052 5.81200 5.86400 5.88775 5.94841 6.01288 6.05660 6.12546 6.21931 6.35875 6.42324 6.48223 6.57840 6.61294 6.78869 6.93808 7.10908 7.22540 7.45693 7.49817 7.57467 7.71032 7.99552 8.13564 8.26733 8.59811 8.78450 8.80788 9.52588 10.20127 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.002877 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.390754 B = 9729.284198 C =10591.025822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.135 4.135 4 C 0.532 3.468 5 O -0.536 6.536 6 N -0.609 5.609 7 C 0.098 3.902 8 C -0.127 4.127 9 C -0.088 4.088 10 H 0.099 0.901 11 C 0.078 3.922 12 N -0.468 5.468 13 C 0.285 3.715 14 C -0.208 4.208 15 C 0.135 3.865 16 C -0.461 4.461 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.797 5.797 20 Si 0.917 3.083 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.274 4.274 25 C 0.110 3.890 26 N -0.598 5.598 27 C 0.068 3.932 28 C -0.123 4.123 29 C 0.151 3.849 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.138 0.862 45 H 0.281 0.719 46 H 0.100 0.900 47 H 0.119 0.881 48 H 0.087 0.913 49 H 0.027 0.973 50 H 0.076 0.924 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.380 5.808 7.892 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 C -0.192 4.192 4 C 0.321 3.679 5 O -0.413 6.413 6 N -0.344 5.344 7 C -0.025 4.025 8 C -0.166 4.166 9 C -0.107 4.107 10 H 0.117 0.883 11 C -0.050 4.050 12 N -0.186 5.186 13 C 0.060 3.940 14 C -0.232 4.232 15 C 0.127 3.873 16 C -0.493 4.493 17 H 0.097 0.903 18 C -0.145 4.145 19 N -0.423 5.423 20 Si 0.741 3.259 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.298 4.298 25 C -0.044 4.044 26 N -0.318 5.318 27 C -0.058 4.058 28 C -0.161 4.161 29 C 0.048 3.952 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.056 0.944 44 H 0.156 0.844 45 H 0.092 0.908 46 H 0.119 0.881 47 H 0.137 0.863 48 H 0.105 0.895 49 H 0.046 0.954 50 H 0.095 0.905 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.281 5.963 7.070 18.725 hybrid contribution 1.733 0.188 -0.228 1.758 sum -14.548 6.151 6.841 17.213 Atomic orbital electron populations 1.21743 0.92758 1.02427 1.02879 1.21279 0.97723 0.97914 0.96411 1.21649 1.01539 0.93617 1.02422 1.20314 0.77634 0.80216 0.89738 1.90672 1.50581 1.65192 1.34854 1.48347 1.60353 1.05666 1.19991 1.22172 1.00050 0.89906 0.90325 1.22738 0.99625 0.95789 0.98423 1.21916 0.96038 0.94396 0.98361 0.88251 1.21866 0.88180 1.02053 0.92898 1.59363 1.03198 1.08921 1.47095 1.19469 0.88797 0.95054 0.90711 1.21933 0.91262 1.06676 1.03355 1.17752 0.93313 0.86806 0.89456 1.19492 0.94166 1.44011 0.91602 0.90350 1.25924 0.97949 0.92271 0.98324 1.69724 1.26444 1.35891 1.10221 0.86230 0.81608 0.79833 0.78205 1.19000 1.20265 1.18945 1.21704 0.97936 1.06922 1.03196 1.21339 0.88487 0.96977 0.97595 1.67152 1.30408 1.18056 1.16172 1.21797 0.98228 0.86017 0.99804 1.20874 0.92472 1.01676 1.01111 1.19959 0.95801 0.90026 0.89429 0.93279 0.91857 0.92252 0.91419 0.89252 0.91973 0.92278 0.91417 0.91471 0.90783 0.90593 0.89276 0.89411 0.94390 0.84442 0.90770 0.88147 0.86325 0.89475 0.95436 0.90545 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.12 37.16 0.34 -0.72 16 2 C -0.11 -1.07 2.64 -91.78 -0.24 -1.31 16 3 C -0.13 -1.27 8.73 37.16 0.32 -0.95 16 4 C 0.53 7.09 6.59 -10.99 -0.07 7.01 16 5 O -0.54 -9.03 14.51 5.56 0.08 -8.94 16 6 N -0.61 -7.67 3.23 -167.67 -0.54 -8.21 16 7 C 0.10 0.94 5.94 -2.97 -0.02 0.93 16 8 C -0.13 -1.22 6.39 -24.83 -0.16 -1.38 16 9 C -0.09 -1.15 3.45 -89.93 -0.31 -1.46 16 10 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 11 C 0.08 1.31 3.82 -3.96 -0.02 1.29 16 12 N -0.47 -9.45 4.72 -174.50 -0.82 -10.28 16 13 C 0.29 6.78 6.40 -154.97 -0.99 5.79 16 14 C -0.21 -5.39 7.84 -38.43 -0.30 -5.69 16 15 C 0.14 3.58 5.57 -106.55 -0.59 2.99 16 16 C -0.46 -12.06 9.11 -37.65 -0.34 -12.40 16 17 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16 18 C 0.07 1.82 5.44 -17.34 -0.09 1.73 16 19 N -0.80 -20.54 10.66 55.55 0.59 -19.94 16 20 Si 0.92 18.67 29.56 -169.99 -5.03 13.65 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.27 -6.62 9.85 -39.07 -0.38 -7.01 16 25 C 0.11 2.48 11.10 -18.04 -0.20 2.28 16 26 N -0.60 -13.93 8.56 -12.82 -0.11 -14.04 16 27 C 0.07 1.28 5.26 -4.67 -0.02 1.26 16 28 C -0.12 -2.01 5.55 -29.08 -0.16 -2.17 16 29 C 0.15 2.15 2.60 -70.41 -0.18 1.96 16 30 H 0.05 0.71 8.04 -51.93 -0.42 0.29 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.42 6.79 -51.93 -0.35 0.06 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.74 7.58 -51.93 -0.39 0.35 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 38 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.07 0.54 6.59 -51.93 -0.34 0.19 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.79 7.82 -51.93 -0.41 0.39 16 42 H 0.09 1.57 7.47 -51.93 -0.39 1.19 16 43 H 0.04 0.66 7.64 -51.93 -0.40 0.26 16 44 H 0.14 3.72 5.32 -52.49 -0.28 3.44 16 45 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 46 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 47 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 48 H 0.09 1.77 6.64 -51.93 -0.35 1.42 16 49 H 0.03 0.53 8.06 -51.93 -0.42 0.11 16 50 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.09 1.49 5.71 -51.93 -0.30 1.20 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -30.01 390.88 -11.59 -41.59 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -8.22 Total: 8.15 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -3.43 Total: -7.85 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.88 Total: -52.48 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.01 -11.59 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166083219.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.734 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds