Wall clock time and date at job start Wed Apr 1 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47119 * 2 1 4 4 C 1.50697 * 109.47180 * 120.00286 * 2 1 3 5 5 O 1.21280 * 120.00031 * 277.29686 * 4 2 1 6 6 N 1.34773 * 120.00226 * 97.29460 * 4 2 1 7 7 C 1.48303 * 126.49952 * 355.16400 * 6 4 2 8 8 C 1.55419 * 107.00469 * 185.39665 * 7 6 4 9 9 C 1.53543 * 101.68848 * 22.52554 * 8 7 6 10 10 H 1.09002 * 111.07286 * 78.81165 * 9 8 7 11 11 C 1.51863 * 115.73670 * 206.54209 * 9 8 7 12 12 N 1.47644 * 107.09311 * 174.38793 * 11 9 8 13 13 C 1.39081 * 111.00136 * 174.60877 * 12 11 9 14 14 C 1.38743 * 119.65913 * 180.27758 * 13 12 11 15 15 C 1.40776 * 118.66791 * 180.19915 * 14 13 12 16 16 C 1.41549 * 120.99359 * 179.79787 * 15 14 13 17 17 H 1.08003 * 119.99940 * 336.29629 * 16 15 14 18 18 C 1.40023 * 120.00375 * 156.29175 * 16 15 14 19 19 N 1.30749 * 119.99828 * 339.90087 * 18 16 15 20 20 Si 1.86799 * 120.00287 * 159.89552 * 18 16 15 21 21 H 1.48502 * 109.46825 * 85.24968 * 20 18 16 22 22 H 1.48493 * 109.47032 * 325.24696 * 20 18 16 23 23 H 1.48496 * 109.47044 * 205.24398 * 20 18 16 24 24 C 1.41186 * 118.01343 * 359.52919 * 15 14 13 25 25 C 1.36553 * 119.14777 * 0.24601 * 24 15 14 26 26 N 1.32100 * 121.26799 * 359.97438 * 25 24 15 27 27 C 1.46357 * 113.66064 * 300.57420 * 12 11 9 28 28 C 1.53867 * 111.69007 * 55.74381 * 27 12 11 29 29 C 1.45224 * 126.49930 * 175.16485 * 6 4 2 30 30 H 1.09004 * 109.18605 * 265.21116 * 29 6 4 31 31 H 1.09000 * 109.47143 * 299.99741 * 1 2 3 32 32 H 1.09001 * 109.47332 * 59.99826 * 1 2 3 33 33 H 1.09005 * 109.47210 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47143 * 240.00259 * 2 1 3 35 35 H 1.09000 * 109.47253 * 61.12499 * 3 2 1 36 36 H 1.09000 * 109.47477 * 181.12509 * 3 2 1 37 37 H 1.08998 * 109.47388 * 301.12783 * 3 2 1 38 38 H 1.09005 * 109.92257 * 66.06262 * 7 6 4 39 39 H 1.08999 * 109.92341 * 304.73293 * 7 6 4 40 40 H 1.09001 * 110.97716 * 264.42394 * 8 7 6 41 41 H 1.09002 * 111.01138 * 140.64329 * 8 7 6 42 42 H 1.08996 * 109.93274 * 54.98942 * 11 9 8 43 43 H 1.09003 * 109.92860 * 293.77688 * 11 9 8 44 44 H 1.08000 * 120.66454 * 359.97433 * 14 13 12 45 45 H 0.96998 * 120.00436 * 179.97438 * 19 18 16 46 46 H 1.08002 * 120.42907 * 180.27132 * 24 15 14 47 47 H 1.07996 * 119.36838 * 179.97438 * 25 24 15 48 48 H 1.09007 * 109.03608 * 176.31560 * 27 12 11 49 49 H 1.09003 * 109.03450 * 295.17055 * 27 12 11 50 50 H 1.09003 * 109.93803 * 184.57844 * 28 27 12 51 51 H 1.08998 * 110.00553 * 63.39882 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.1087 -0.1164 2.2850 6 7 2.3967 -2.0060 1.1589 7 6 2.2694 -2.8944 -0.0217 8 6 2.6944 -4.3185 0.4330 9 6 2.4754 -4.2387 1.9506 10 1 1.4202 -4.3496 2.2007 11 6 3.3340 -5.1680 2.7906 12 7 3.0712 -4.8406 4.2060 13 6 3.7274 -5.7274 5.0529 14 6 3.5984 -5.5872 6.4272 15 6 4.2750 -6.4939 7.2650 16 6 4.1813 -6.3937 8.6739 17 1 3.9309 -5.4485 9.1326 18 6 4.4131 -7.5200 9.4729 19 7 4.3264 -8.7176 8.9555 20 14 4.8464 -7.3116 11.2779 21 1 3.5996 -7.1857 12.0748 22 1 5.6703 -6.0884 11.4511 23 1 5.6134 -8.4951 11.7427 24 6 5.0452 -7.5096 6.6580 25 6 5.1090 -7.5715 5.2954 26 7 4.4647 -6.7013 4.5387 27 6 3.3824 -3.4539 4.5557 28 6 2.6311 -2.4579 3.6551 29 6 2.9884 -2.7969 2.2235 30 1 4.0736 -2.7796 2.1219 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6932 1.9504 0.8999 36 1 3.1298 1.4426 -0.0202 37 1 1.6602 1.9621 -0.8797 38 1 2.9260 -2.5478 -0.8198 39 1 1.2355 -2.9077 -0.3668 40 1 3.7424 -4.5062 0.1991 41 1 2.0544 -5.0789 -0.0145 42 1 4.3877 -5.0084 2.5617 43 1 3.0626 -6.2049 2.5925 44 1 2.9939 -4.7962 6.8459 45 1 4.4873 -9.4979 9.5088 46 1 5.5769 -8.2287 7.2636 47 1 5.6974 -8.3467 4.8274 48 1 3.1005 -3.2771 5.5938 49 1 4.4549 -3.2921 4.4476 50 1 2.9442 -1.4395 3.8851 51 1 1.5560 -2.5584 3.8037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166083226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:38 Heat of formation + Delta-G solvation = -2.381959 kcal Electronic energy + Delta-G solvation = -30398.451756 eV Core-core repulsion = 26489.957738 eV Total energy + Delta-G solvation = -3908.494018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.91066 -39.26911 -38.10937 -36.09606 -34.68130 -34.00881 -32.29794 -31.74847 -30.72670 -28.80888 -28.01229 -27.49266 -25.97196 -24.97328 -23.44600 -22.60665 -21.99852 -21.00172 -20.51473 -19.92742 -18.76069 -17.56652 -17.15801 -16.23026 -15.83969 -15.56299 -15.21262 -14.90297 -14.72297 -14.56613 -14.33262 -14.09638 -13.85522 -13.44672 -13.41678 -13.29883 -12.98349 -12.89990 -12.52851 -12.43841 -12.33919 -12.24423 -11.97223 -11.93185 -11.49711 -11.45658 -11.44432 -11.33042 -11.25840 -11.02855 -10.92459 -10.80944 -10.75253 -10.34586 -10.19235 -9.90922 -9.52123 -9.37285 -8.83718 -8.71021 -8.04329 -7.98693 -6.97170 -6.81786 -4.59426 2.52230 2.75250 2.80114 2.82406 3.01564 3.05489 3.22744 3.84516 4.05595 4.24292 4.38141 4.52027 4.60907 4.67054 4.72098 4.82345 4.98237 5.05772 5.14994 5.24329 5.30350 5.37714 5.41599 5.48972 5.50462 5.52440 5.56635 5.59830 5.65883 5.77214 5.80653 5.83253 5.85094 5.93063 5.99292 6.10036 6.19856 6.28273 6.33463 6.37094 6.51427 6.67904 6.86279 6.91954 7.01744 7.15551 7.42815 7.44336 7.53731 7.73597 7.92459 8.09506 8.25912 8.52032 8.75393 8.78247 9.59349 10.04191 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022166 B = 0.002312 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.920036 B =12107.511987 C =13036.883440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C -0.136 4.136 4 C 0.533 3.467 5 O -0.534 6.534 6 N -0.612 5.612 7 C 0.103 3.897 8 C -0.123 4.123 9 C -0.106 4.106 10 H 0.092 0.908 11 C 0.095 3.905 12 N -0.490 5.490 13 C 0.311 3.689 14 C -0.287 4.287 15 C 0.143 3.857 16 C -0.456 4.456 17 H 0.081 0.919 18 C 0.080 3.920 19 N -0.780 5.780 20 Si 0.909 3.091 21 H -0.267 1.267 22 H -0.259 1.259 23 H -0.275 1.275 24 C -0.227 4.227 25 C 0.102 3.898 26 N -0.605 5.605 27 C 0.072 3.928 28 C -0.110 4.110 29 C 0.128 3.872 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.284 0.716 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.087 0.913 49 H 0.033 0.967 50 H 0.087 0.913 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 10.993 -17.607 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.194 4.194 4 C 0.321 3.679 5 O -0.411 6.411 6 N -0.346 5.346 7 C -0.019 4.019 8 C -0.162 4.162 9 C -0.125 4.125 10 H 0.111 0.889 11 C -0.032 4.032 12 N -0.208 5.208 13 C 0.083 3.917 14 C -0.312 4.312 15 C 0.135 3.865 16 C -0.486 4.486 17 H 0.099 0.901 18 C -0.140 4.140 19 N -0.405 5.405 20 Si 0.733 3.267 21 H -0.192 1.192 22 H -0.183 1.183 23 H -0.200 1.200 24 C -0.250 4.250 25 C -0.048 4.048 26 N -0.326 5.326 27 C -0.055 4.055 28 C -0.148 4.148 29 C 0.024 3.976 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.095 0.905 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.105 0.895 49 H 0.051 0.949 50 H 0.105 0.895 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.463 11.067 -17.860 21.480 hybrid contribution 0.833 -0.129 1.607 1.815 sum -3.630 10.937 -16.253 19.924 Atomic orbital electron populations 1.21710 0.92548 1.02474 1.02985 1.21260 0.97905 0.97753 0.96279 1.21676 1.01168 0.93778 1.02779 1.20363 0.76907 0.80106 0.90496 1.90686 1.54016 1.65419 1.30940 1.48305 1.62489 1.09707 1.14050 1.22485 1.01319 0.90061 0.88048 1.22493 1.02719 0.95091 0.95872 1.22387 1.01683 0.94481 0.93975 0.88941 1.21542 0.96903 0.99227 0.85557 1.58404 1.56369 1.02530 1.03528 1.19103 0.91218 0.91935 0.89467 1.21270 1.10460 1.08073 0.91443 1.17668 0.86615 0.88983 0.93228 1.19566 1.41779 0.96488 0.90796 0.90055 1.25971 0.92001 0.94494 1.01538 1.69803 1.32854 0.99049 1.38754 0.86313 0.79673 0.79247 0.81503 1.19216 1.18320 1.19993 1.21800 1.05104 1.03699 0.94385 1.21432 0.96498 0.95582 0.91271 1.67140 1.15754 1.09095 1.40601 1.22074 0.97570 0.85644 1.00198 1.21624 1.01538 0.99506 0.92124 1.21463 0.96930 0.90140 0.89043 0.91674 0.91681 0.91439 0.92308 0.89569 0.91249 0.92526 0.91848 0.91255 0.91064 0.90202 0.89631 0.93763 0.89385 0.88024 0.90545 0.86150 0.86410 0.89486 0.94850 0.89467 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.18 37.16 0.34 -0.69 16 2 C -0.11 -0.94 2.95 -91.78 -0.27 -1.21 16 3 C -0.14 -1.11 8.90 37.15 0.33 -0.78 16 4 C 0.53 6.59 6.77 -10.99 -0.07 6.51 16 5 O -0.53 -8.56 14.51 5.56 0.08 -8.48 16 6 N -0.61 -7.09 3.28 -163.53 -0.54 -7.62 16 7 C 0.10 0.84 6.15 -1.76 -0.01 0.83 16 8 C -0.12 -1.11 6.57 -25.16 -0.17 -1.28 16 9 C -0.11 -1.34 2.78 -89.61 -0.25 -1.59 16 10 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 11 C 0.10 1.56 4.36 -3.99 -0.02 1.54 16 12 N -0.49 -9.44 4.56 -173.23 -0.79 -10.23 16 13 C 0.31 7.21 6.47 -154.98 -1.00 6.21 16 14 C -0.29 -7.15 9.00 -38.44 -0.35 -7.50 16 15 C 0.14 3.82 5.60 -106.56 -0.60 3.22 16 16 C -0.46 -11.91 9.10 -37.65 -0.34 -12.26 16 17 H 0.08 2.04 7.92 -52.48 -0.42 1.63 16 18 C 0.08 1.97 5.13 -17.34 -0.09 1.89 16 19 N -0.78 -19.69 11.09 55.55 0.62 -19.07 16 20 Si 0.91 18.18 29.60 -169.99 -5.03 13.15 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 24 C -0.23 -5.84 8.75 -39.07 -0.34 -6.18 16 25 C 0.10 2.44 11.10 -18.04 -0.20 2.24 16 26 N -0.61 -14.30 8.70 -12.82 -0.11 -14.41 16 27 C 0.07 1.26 5.13 -3.67 -0.02 1.24 16 28 C -0.11 -1.67 5.05 -27.09 -0.14 -1.81 16 29 C 0.13 1.72 2.53 -68.13 -0.17 1.55 16 30 H 0.07 0.93 7.89 -51.93 -0.41 0.52 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.57 7.10 -51.93 -0.37 0.20 16 35 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.45 7.98 -51.93 -0.41 0.04 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.04 0.75 7.97 -51.93 -0.41 0.34 16 43 H 0.09 1.54 7.78 -51.93 -0.40 1.14 16 44 H 0.10 2.43 6.96 -52.49 -0.37 2.06 16 45 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 46 H 0.12 3.14 6.29 -52.49 -0.33 2.81 16 47 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 48 H 0.09 1.57 6.61 -51.92 -0.34 1.22 16 49 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.09 1.40 6.76 -51.93 -0.35 1.05 16 51 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -29.92 395.59 -11.60 -41.52 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.43 Total: 7.24 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.36 Total: -8.07 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.82 Total: -51.33 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.92 -11.60 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166083226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.143 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds