Wall clock time and date at job start Wed Apr 1 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47119 * 2 1 4 4 C 1.50697 * 109.47180 * 120.00286 * 2 1 3 5 5 O 1.21280 * 120.00031 * 277.29686 * 4 2 1 6 6 N 1.34773 * 120.00226 * 97.29460 * 4 2 1 7 7 C 1.48303 * 126.49952 * 355.16400 * 6 4 2 8 8 C 1.55419 * 107.00469 * 185.39665 * 7 6 4 9 9 C 1.53543 * 101.68848 * 22.52554 * 8 7 6 10 10 H 1.09002 * 111.07286 * 78.81165 * 9 8 7 11 11 C 1.51863 * 115.73670 * 206.54209 * 9 8 7 12 12 N 1.47644 * 107.09311 * 174.38793 * 11 9 8 13 13 C 1.39081 * 111.00136 * 174.60877 * 12 11 9 14 14 C 1.38743 * 119.65913 * 180.27758 * 13 12 11 15 15 C 1.40776 * 118.66791 * 180.19915 * 14 13 12 16 16 C 1.41549 * 120.99359 * 179.79787 * 15 14 13 17 17 H 1.08003 * 119.99940 * 336.29629 * 16 15 14 18 18 C 1.40023 * 120.00375 * 156.29175 * 16 15 14 19 19 N 1.30749 * 119.99828 * 339.90087 * 18 16 15 20 20 Si 1.86799 * 120.00287 * 159.89552 * 18 16 15 21 21 H 1.48502 * 109.46825 * 85.24968 * 20 18 16 22 22 H 1.48493 * 109.47032 * 325.24696 * 20 18 16 23 23 H 1.48496 * 109.47044 * 205.24398 * 20 18 16 24 24 C 1.41186 * 118.01343 * 359.52919 * 15 14 13 25 25 C 1.36553 * 119.14777 * 0.24601 * 24 15 14 26 26 N 1.32100 * 121.26799 * 359.97438 * 25 24 15 27 27 C 1.46357 * 113.66064 * 300.57420 * 12 11 9 28 28 C 1.53867 * 111.69007 * 55.74381 * 27 12 11 29 29 C 1.45224 * 126.49930 * 175.16485 * 6 4 2 30 30 H 1.09004 * 109.18605 * 265.21116 * 29 6 4 31 31 H 1.09000 * 109.47143 * 299.99741 * 1 2 3 32 32 H 1.09001 * 109.47332 * 59.99826 * 1 2 3 33 33 H 1.09005 * 109.47210 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47143 * 240.00259 * 2 1 3 35 35 H 1.09000 * 109.47253 * 61.12499 * 3 2 1 36 36 H 1.09000 * 109.47477 * 181.12509 * 3 2 1 37 37 H 1.08998 * 109.47388 * 301.12783 * 3 2 1 38 38 H 1.09005 * 109.92257 * 66.06262 * 7 6 4 39 39 H 1.08999 * 109.92341 * 304.73293 * 7 6 4 40 40 H 1.09001 * 110.97716 * 264.42394 * 8 7 6 41 41 H 1.09002 * 111.01138 * 140.64329 * 8 7 6 42 42 H 1.08996 * 109.93274 * 54.98942 * 11 9 8 43 43 H 1.09003 * 109.92860 * 293.77688 * 11 9 8 44 44 H 1.08000 * 120.66454 * 359.97433 * 14 13 12 45 45 H 0.96998 * 120.00436 * 179.97438 * 19 18 16 46 46 H 1.08002 * 120.42907 * 180.27132 * 24 15 14 47 47 H 1.07996 * 119.36838 * 179.97438 * 25 24 15 48 48 H 1.09007 * 109.03608 * 176.31560 * 27 12 11 49 49 H 1.09003 * 109.03450 * 295.17055 * 27 12 11 50 50 H 1.09003 * 109.93803 * 184.57844 * 28 27 12 51 51 H 1.08998 * 110.00553 * 63.39882 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.1087 -0.1164 2.2850 6 7 2.3967 -2.0060 1.1589 7 6 2.2694 -2.8944 -0.0217 8 6 2.6944 -4.3185 0.4330 9 6 2.4754 -4.2387 1.9506 10 1 1.4202 -4.3496 2.2007 11 6 3.3340 -5.1680 2.7906 12 7 3.0712 -4.8406 4.2060 13 6 3.7274 -5.7274 5.0529 14 6 3.5984 -5.5872 6.4272 15 6 4.2750 -6.4939 7.2650 16 6 4.1813 -6.3937 8.6739 17 1 3.9309 -5.4485 9.1326 18 6 4.4131 -7.5200 9.4729 19 7 4.3264 -8.7176 8.9555 20 14 4.8464 -7.3116 11.2779 21 1 3.5996 -7.1857 12.0748 22 1 5.6703 -6.0884 11.4511 23 1 5.6134 -8.4951 11.7427 24 6 5.0452 -7.5096 6.6580 25 6 5.1090 -7.5715 5.2954 26 7 4.4647 -6.7013 4.5387 27 6 3.3824 -3.4539 4.5557 28 6 2.6311 -2.4579 3.6551 29 6 2.9884 -2.7969 2.2235 30 1 4.0736 -2.7796 2.1219 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6932 1.9504 0.8999 36 1 3.1298 1.4426 -0.0202 37 1 1.6602 1.9621 -0.8797 38 1 2.9260 -2.5478 -0.8198 39 1 1.2355 -2.9077 -0.3668 40 1 3.7424 -4.5062 0.1991 41 1 2.0544 -5.0789 -0.0145 42 1 4.3877 -5.0084 2.5617 43 1 3.0626 -6.2049 2.5925 44 1 2.9939 -4.7962 6.8459 45 1 4.4873 -9.4979 9.5088 46 1 5.5769 -8.2287 7.2636 47 1 5.6974 -8.3467 4.8274 48 1 3.1005 -3.2771 5.5938 49 1 4.4549 -3.2921 4.4476 50 1 2.9442 -1.4395 3.8851 51 1 1.5560 -2.5584 3.8037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166083226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:37 Heat of formation + Delta-G solvation = -18.591880 kcal Electronic energy + Delta-G solvation = -30399.154671 eV Core-core repulsion = 26489.957738 eV Total energy + Delta-G solvation = -3909.196933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.00355 -40.74159 -39.46010 -37.48724 -35.90209 -35.39804 -33.44023 -33.09544 -32.59362 -30.08728 -29.53814 -28.08690 -27.86083 -26.09109 -24.62247 -23.99721 -22.99857 -22.63418 -22.09680 -21.15538 -19.72388 -19.28569 -18.11858 -17.62694 -17.17786 -16.76920 -16.68190 -16.49015 -16.13546 -15.90477 -15.41766 -15.21315 -15.15345 -14.94374 -14.59557 -14.46450 -14.29431 -14.13824 -13.81130 -13.66058 -13.37833 -13.30425 -13.06867 -13.01431 -12.97158 -12.84033 -12.76647 -12.53674 -12.35778 -12.13763 -12.07531 -12.01180 -11.85266 -11.80306 -11.69962 -11.33065 -11.22347 -10.59282 -10.50838 -10.00912 -9.91039 -9.64811 -8.81948 -8.64585 -6.59110 0.87545 0.94455 1.36549 1.48190 1.55202 1.61060 1.93440 2.16094 2.58017 2.79280 3.22541 3.55268 3.64484 3.69887 3.75551 3.88580 3.96543 4.02506 4.11815 4.13877 4.24312 4.29230 4.39076 4.45430 4.48234 4.61642 4.64628 4.74587 4.76447 4.79461 4.82035 4.85810 4.87830 4.90686 4.93364 4.96111 4.98849 5.01863 5.09267 5.13018 5.20063 5.25137 5.29511 5.30286 5.33195 5.44608 5.52741 5.74506 5.93911 6.05791 6.34964 6.55995 6.60691 6.79114 6.83510 7.17184 7.67560 8.20079 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022166 B = 0.002312 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.920036 B =12107.511987 C =13036.883440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.523 3.477 5 O -0.582 6.582 6 N -0.613 5.613 7 C 0.101 3.899 8 C -0.114 4.114 9 C -0.097 4.097 10 H 0.086 0.914 11 C 0.100 3.900 12 N -0.494 5.494 13 C 0.315 3.685 14 C -0.312 4.312 15 C 0.117 3.883 16 C -0.489 4.489 17 H 0.079 0.921 18 C 0.042 3.958 19 N -0.807 5.807 20 Si 0.985 3.015 21 H -0.260 1.260 22 H -0.259 1.259 23 H -0.261 1.261 24 C -0.250 4.250 25 C 0.104 3.896 26 N -0.606 5.606 27 C 0.079 3.921 28 C -0.095 4.095 29 C 0.128 3.872 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.038 0.962 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.294 0.706 46 H 0.112 0.888 47 H 0.148 0.852 48 H 0.073 0.927 49 H 0.026 0.974 50 H 0.077 0.923 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 11.104 -20.152 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C -0.193 4.193 4 C 0.313 3.687 5 O -0.462 6.462 6 N -0.345 5.345 7 C -0.019 4.019 8 C -0.152 4.152 9 C -0.116 4.116 10 H 0.104 0.896 11 C -0.027 4.027 12 N -0.212 5.212 13 C 0.086 3.914 14 C -0.337 4.337 15 C 0.109 3.891 16 C -0.519 4.519 17 H 0.097 0.903 18 C -0.177 4.177 19 N -0.431 5.431 20 Si 0.805 3.195 21 H -0.184 1.184 22 H -0.183 1.183 23 H -0.185 1.185 24 C -0.273 4.273 25 C -0.046 4.046 26 N -0.327 5.327 27 C -0.048 4.048 28 C -0.133 4.133 29 C 0.023 3.977 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.117 0.883 45 H 0.105 0.895 46 H 0.130 0.870 47 H 0.166 0.834 48 H 0.092 0.908 49 H 0.044 0.956 50 H 0.095 0.905 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.893 11.170 -20.464 23.822 hybrid contribution 0.929 -0.167 2.348 2.530 sum -3.964 11.003 -18.116 21.564 Atomic orbital electron populations 1.21720 0.91567 1.02901 1.03262 1.21334 0.98536 0.97461 0.95098 1.21687 1.00857 0.93828 1.02956 1.21216 0.76112 0.80120 0.91228 1.90665 1.56016 1.66510 1.33020 1.48440 1.61780 1.09872 1.14446 1.22771 1.03577 0.88486 0.87106 1.22532 1.03799 0.96596 0.92312 1.22259 1.00256 0.92654 0.96471 0.89555 1.21568 0.97397 0.99647 0.84105 1.58394 1.55403 1.02600 1.04823 1.19398 0.90263 0.92100 0.89629 1.21371 1.11409 1.08476 0.92474 1.18052 0.87199 0.89800 0.94088 1.19839 1.43517 0.97262 0.91281 0.90322 1.26848 0.91038 0.93627 1.06156 1.69828 1.32538 0.99932 1.40841 0.85171 0.79567 0.79460 0.75293 1.18432 1.18334 1.18496 1.21785 1.06206 1.04088 0.95217 1.21874 0.96051 0.95843 0.90837 1.67293 1.15887 1.09263 1.40243 1.22005 0.97417 0.85171 1.00190 1.21416 1.00443 0.97994 0.93489 1.21301 0.96736 0.91158 0.88474 0.92416 0.93778 0.88792 0.91818 0.86550 0.93537 0.93112 0.89050 0.88450 0.88648 0.89651 0.87324 0.94330 0.90388 0.88258 0.89462 0.87023 0.83444 0.90846 0.95557 0.90469 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.18 71.98 0.66 -0.99 16 2 C -0.10 -1.47 2.95 -11.54 -0.03 -1.51 16 3 C -0.14 -1.97 8.90 71.98 0.64 -1.32 16 4 C 0.52 12.29 6.77 87.66 0.59 12.89 16 5 O -0.58 -19.02 14.51 -3.03 -0.04 -19.07 16 6 N -0.61 -12.96 3.28 -789.69 -2.59 -15.55 16 7 C 0.10 1.23 6.15 86.86 0.53 1.76 16 8 C -0.11 -1.66 6.57 31.61 0.21 -1.45 16 9 C -0.10 -2.33 2.78 -10.14 -0.03 -2.35 16 10 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 11 C 0.10 3.23 4.36 85.79 0.37 3.60 16 12 N -0.49 -19.52 4.56 -701.97 -3.20 -22.72 16 13 C 0.32 15.05 6.47 132.90 0.86 15.91 16 14 C -0.31 -16.32 9.00 23.01 0.21 -16.11 16 15 C 0.12 6.49 5.60 -21.12 -0.12 6.37 16 16 C -0.49 -26.56 9.10 23.52 0.21 -26.35 16 17 H 0.08 4.15 7.92 -2.91 -0.02 4.12 16 18 C 0.04 2.07 5.13 85.29 0.44 2.51 16 19 N -0.81 -41.32 11.09 21.84 0.24 -41.08 16 20 Si 0.99 37.39 29.60 68.60 2.03 39.42 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 23 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 24 C -0.25 -13.27 8.75 22.60 0.20 -13.07 16 25 C 0.10 5.02 11.10 84.26 0.94 5.96 16 26 N -0.61 -28.94 8.70 -194.48 -1.69 -30.63 16 27 C 0.08 2.88 5.13 86.70 0.44 3.33 16 28 C -0.09 -3.00 5.05 30.36 0.15 -2.84 16 29 C 0.13 3.37 2.53 45.55 0.12 3.48 16 30 H 0.06 1.62 7.89 -2.38 -0.02 1.60 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.12 0.98 7.10 -2.39 -0.02 0.97 16 35 H 0.05 0.88 7.82 -2.39 -0.02 0.87 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 0.73 7.98 -2.38 -0.02 0.71 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.20 8.13 -2.39 -0.02 1.18 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.04 1.30 7.97 -2.39 -0.02 1.28 16 43 H 0.08 2.69 7.78 -2.39 -0.02 2.67 16 44 H 0.10 5.07 6.96 -2.91 -0.02 5.05 16 45 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 46 H 0.11 6.03 6.29 -2.91 -0.02 6.01 16 47 H 0.15 6.08 8.06 -2.91 -0.02 6.05 16 48 H 0.07 2.83 6.61 -2.38 -0.02 2.82 16 49 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.08 2.61 6.76 -2.39 -0.02 2.60 16 51 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -68.94 395.59 2.05 -66.89 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.91 Total: 32.92 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 6.40 Total: -10.19 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -7.24 Total: -109.97 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.04 Total: -19.07 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -68.94 2.05 -66.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166083226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.298 kcal (2) G-P(sol) polarization free energy of solvation -68.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds