Wall clock time and date at job start Wed Apr 1 2020 03:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.30265 * 2 1 4 4 C 1.54392 * 110.43248 * 237.76345 * 2 1 3 5 5 N 1.48147 * 104.61886 * 264.95364 * 4 2 1 6 6 C 1.34773 * 127.84096 * 140.39586 * 5 4 2 7 7 O 1.21551 * 120.00184 * 175.19773 * 6 5 4 8 8 C 1.47842 * 119.99639 * 355.18985 * 6 5 4 9 9 C 1.40024 * 120.55783 * 43.35382 * 8 6 5 10 10 C 1.38361 * 118.28592 * 179.73172 * 9 8 6 11 11 C 1.38354 * 119.29930 * 0.55519 * 10 9 8 12 12 N 1.31922 * 121.08599 * 359.70277 * 11 10 9 13 13 C 1.31699 * 121.87634 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.71399 * 179.97438 * 13 12 11 15 15 C 1.52999 * 117.50183 * 2.18540 * 14 13 12 16 16 C 1.53000 * 117.49877 * 293.55938 * 14 13 12 17 17 C 1.48148 * 104.31871 * 320.41227 * 5 4 2 18 18 C 1.54289 * 110.34407 * 122.17635 * 2 1 3 19 19 C 1.53001 * 110.33842 * 359.97438 * 18 2 1 20 20 C 1.52995 * 110.34151 * 237.85083 * 18 2 1 21 21 N 1.46502 * 109.47042 * 180.02562 * 20 18 2 22 22 C 1.36941 * 119.99778 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99914 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99538 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00214 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99958 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47100 * 90.00083 * 26 24 22 28 28 H 1.48495 * 109.47588 * 210.00295 * 26 24 22 29 29 H 1.48505 * 109.46885 * 330.00654 * 26 24 22 30 30 H 1.08999 * 109.47147 * 297.82357 * 1 2 3 31 31 H 1.09004 * 109.47357 * 57.82499 * 1 2 3 32 32 H 1.08999 * 109.47121 * 177.82424 * 1 2 3 33 33 H 1.09001 * 110.40605 * 23.73317 * 4 2 1 34 34 H 1.08997 * 110.40778 * 146.04456 * 4 2 1 35 35 H 1.08002 * 120.85722 * 359.97438 * 9 8 6 36 36 H 1.08002 * 120.34920 * 180.26025 * 10 9 8 37 37 H 1.08002 * 119.45445 * 179.72292 * 11 10 9 38 38 H 1.08999 * 115.54474 * 147.89448 * 14 13 12 39 39 H 1.09001 * 117.49725 * 359.97438 * 15 14 13 40 40 H 1.08995 * 117.49921 * 145.01675 * 15 14 13 41 41 H 1.08998 * 117.49509 * 214.97628 * 16 14 13 42 42 H 1.08997 * 117.49968 * 0.02562 * 16 14 13 43 43 H 1.09001 * 110.41089 * 280.79885 * 17 5 4 44 44 H 1.09000 * 110.40370 * 158.37189 * 17 5 4 45 45 H 1.08996 * 109.47420 * 298.52694 * 19 18 2 46 46 H 1.08998 * 109.47476 * 58.52710 * 19 18 2 47 47 H 1.09000 * 109.46839 * 178.52739 * 19 18 2 48 48 H 1.09005 * 109.46906 * 299.99567 * 20 18 2 49 49 H 1.09000 * 109.47726 * 59.99804 * 20 18 2 50 50 H 0.96996 * 120.00132 * 359.97438 * 21 20 18 51 51 H 0.97011 * 120.00088 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7717 -1.2238 5 7 2.3177 -2.1430 -0.7212 6 6 2.0831 -3.3102 -1.3528 7 8 2.4233 -4.3582 -0.8394 8 6 1.4118 -3.3161 -2.6700 9 6 1.7707 -2.3889 -3.6560 10 6 1.1158 -2.4403 -4.8737 11 6 0.1288 -3.3893 -5.0722 12 7 -0.1922 -4.2470 -4.1227 13 6 0.4064 -4.2422 -2.9497 14 6 0.0005 -5.2442 -1.8998 15 6 -1.0726 -6.2674 -2.2771 16 6 -1.4090 -5.1247 -1.3167 17 6 2.8824 -1.9400 0.6333 18 6 2.0664 -0.7704 1.2245 19 6 0.9061 -1.3010 2.0690 20 6 2.9670 0.1334 2.0687 21 7 3.4657 -0.6163 3.2243 22 6 4.2969 -0.0092 4.1275 23 1 4.5852 1.0222 3.9876 24 6 4.7689 -0.7195 5.2228 25 7 4.4180 -1.9765 5.3929 26 14 5.9034 0.1084 6.4545 27 1 5.0932 0.7400 7.5269 28 1 6.8104 -0.9048 7.0510 29 1 6.7083 1.1484 5.7647 30 1 -0.3633 0.4797 0.9088 31 1 -0.3634 0.5472 -0.8699 32 1 -0.3633 -1.0269 -0.0390 33 1 1.3253 -0.7881 -2.0205 34 1 2.9957 -0.3213 -1.5792 35 1 2.5416 -1.6552 -3.4721 36 1 1.3692 -1.7438 -5.6594 37 1 -0.3871 -3.4287 -6.0202 38 1 0.7959 -5.5720 -1.2305 39 1 -1.4853 -6.2156 -3.2846 40 1 -0.9832 -7.2688 -1.8562 41 1 -1.5409 -5.3746 -0.2640 42 1 -2.0428 -4.3217 -1.6928 43 1 3.9373 -1.6733 0.5693 44 1 2.7524 -2.8378 1.2376 45 1 0.3111 -0.4645 2.4353 46 1 0.2805 -1.9521 1.4586 47 1 1.3003 -1.8643 2.9148 48 1 3.8091 0.4728 1.4654 49 1 2.3961 0.9956 2.4134 50 1 3.2071 -1.5427 3.3497 51 1 4.7482 -2.4730 6.1581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182001207.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:33 Heat of formation + Delta-G solvation = 46.374741 kcal Electronic energy + Delta-G solvation = -31009.828272 eV Core-core repulsion = 27103.448503 eV Total energy + Delta-G solvation = -3906.379769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.13307 -39.92633 -38.10519 -37.00763 -34.88542 -33.39795 -32.58683 -31.54960 -31.41373 -29.62270 -27.56814 -26.01276 -25.56906 -24.75383 -24.23500 -23.11796 -22.40311 -21.26953 -20.94475 -19.85920 -18.60456 -17.59153 -17.26898 -16.81950 -16.47237 -15.99027 -15.75302 -15.35062 -14.62995 -14.52677 -14.26269 -14.24976 -14.06481 -13.80145 -13.61961 -13.40655 -13.14718 -13.02600 -12.84789 -12.54106 -12.24503 -12.12671 -11.84395 -11.59671 -11.54817 -11.29612 -11.28051 -11.00768 -10.94364 -10.81703 -10.58682 -10.47264 -10.35296 -10.21958 -10.17299 -10.06005 -9.89301 -9.62565 -9.55974 -9.09540 -8.88201 -8.63505 -6.92201 -5.75922 -3.04910 0.49601 0.86599 2.64139 2.90067 3.35046 3.43684 3.48715 3.50720 3.81678 3.96262 4.20756 4.37875 4.44890 4.53718 4.58696 4.71565 4.77109 4.86713 4.88229 4.97349 5.01017 5.11752 5.27435 5.34587 5.37921 5.41342 5.47721 5.55917 5.56422 5.62222 5.68566 5.73556 5.76980 5.78772 5.88087 5.96855 6.01564 6.05084 6.07708 6.13581 6.17503 6.20637 6.25110 6.31391 6.42332 6.56663 6.66480 6.75684 6.85106 7.52398 7.64736 7.69854 8.11100 8.42527 9.53975 10.11101 10.45502 11.46663 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.002764 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.725421 B =10127.726282 C =10672.091922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.098 3.902 5 N -0.611 5.611 6 C 0.584 3.416 7 O -0.527 6.527 8 C -0.167 4.167 9 C -0.044 4.044 10 C -0.186 4.186 11 C 0.119 3.881 12 N -0.485 5.485 13 C 0.214 3.786 14 C -0.134 4.134 15 C -0.156 4.156 16 C -0.159 4.159 17 C 0.121 3.879 18 C -0.074 4.074 19 C -0.132 4.132 20 C 0.168 3.832 21 N -0.730 5.730 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.145 0.855 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.047 0.953 47 H 0.067 0.933 48 H 0.020 0.980 49 H 0.023 0.977 50 H 0.385 0.615 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.849 0.421 -22.430 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.107 0.893 4 C -0.025 4.025 5 N -0.344 5.344 6 C 0.372 3.628 7 O -0.405 6.405 8 C -0.172 4.172 9 C -0.071 4.071 10 C -0.205 4.205 11 C -0.038 4.038 12 N -0.193 5.193 13 C 0.076 3.924 14 C -0.152 4.152 15 C -0.194 4.194 16 C -0.196 4.196 17 C -0.001 4.001 18 C -0.075 4.075 19 C -0.189 4.189 20 C 0.040 3.960 21 N -0.375 5.375 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.177 0.823 38 H 0.162 0.838 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.038 0.962 49 H 0.041 0.959 50 H 0.220 0.780 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.216 -0.742 -22.281 25.421 hybrid contribution 1.394 1.009 0.797 1.896 sum -10.823 0.267 -21.484 24.058 Atomic orbital electron populations 1.21902 0.94508 1.01865 1.01582 1.22138 0.96297 0.99520 0.93729 0.89292 1.22681 1.00527 0.81951 0.97328 1.48908 1.62243 1.04979 1.18243 1.17545 0.78672 0.82566 0.84028 1.90766 1.52191 1.30538 1.66971 1.20672 1.00977 0.99431 0.96135 1.21844 0.97389 0.95472 0.92357 1.22075 0.98822 1.01520 0.98129 1.22922 0.93576 0.89698 0.97579 1.67472 1.27435 1.23746 1.00672 1.20403 0.89250 0.91556 0.91188 1.21397 0.94667 0.99581 0.99560 1.22926 1.01335 0.94145 1.00946 1.22936 0.95749 1.01478 0.99472 1.22528 0.97318 0.99163 0.81047 1.21707 0.96260 0.95081 0.94483 1.21859 0.96801 1.00745 0.99492 1.20708 0.93615 0.92959 0.88676 1.42402 1.57378 1.12908 1.24857 1.19194 1.20549 0.95723 1.01731 0.91258 1.24730 1.01091 0.96070 0.98950 1.69656 1.48950 1.08412 1.30936 0.86212 0.80396 0.78143 0.81541 1.21773 1.21804 1.20824 0.91726 0.93290 0.92462 0.90417 0.90703 0.84103 0.84133 0.82295 0.83772 0.87552 0.88524 0.88084 0.88948 0.90216 0.89473 0.92415 0.93369 0.91428 0.96230 0.95949 0.78026 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 7.93 37.16 0.29 -1.18 16 2 C -0.10 -1.11 3.30 -89.22 -0.29 -1.41 16 3 H 0.09 0.95 7.71 -51.93 -0.40 0.54 16 4 C 0.10 1.04 5.11 -2.41 -0.01 1.02 16 5 N -0.61 -8.47 3.32 -170.42 -0.57 -9.04 16 6 C 0.58 8.86 7.12 -12.33 -0.09 8.77 16 7 O -0.53 -9.83 14.93 5.32 0.08 -9.75 16 8 C -0.17 -2.10 5.42 -104.82 -0.57 -2.67 16 9 C -0.04 -0.42 7.94 -38.87 -0.31 -0.73 16 10 C -0.19 -1.38 10.10 -39.49 -0.40 -1.78 16 11 C 0.12 1.01 11.17 -17.47 -0.20 0.81 16 12 N -0.48 -5.52 9.28 -9.14 -0.08 -5.60 16 13 C 0.21 2.73 6.49 -82.17 -0.53 2.20 16 14 C -0.13 -1.71 5.38 -91.77 -0.49 -2.21 16 15 C -0.16 -1.66 10.02 -26.73 -0.27 -1.92 16 16 C -0.16 -1.73 10.23 -26.73 -0.27 -2.01 16 17 C 0.12 1.97 5.69 -2.41 -0.01 1.96 16 18 C -0.07 -1.12 0.73 -153.11 -0.11 -1.23 16 19 C -0.13 -2.07 7.07 37.16 0.26 -1.80 16 20 C 0.17 3.16 4.87 -4.04 -0.02 3.14 16 21 N -0.73 -17.75 5.13 -59.91 -0.31 -18.06 16 22 C -0.24 -6.59 9.99 -15.06 -0.15 -6.75 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 26 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.06 0.69 6.84 -51.93 -0.36 0.34 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.65 6.76 -51.93 -0.35 0.30 16 33 H 0.08 0.70 5.78 -51.93 -0.30 0.40 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.14 1.08 6.76 -52.49 -0.35 0.73 16 36 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 37 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.14 2.16 5.85 -51.93 -0.30 1.86 16 39 H 0.11 1.11 7.54 -51.93 -0.39 0.72 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.38 7.83 -51.93 -0.41 0.98 16 44 H 0.09 1.64 7.65 -51.93 -0.40 1.24 16 45 H 0.06 0.86 6.89 -51.93 -0.36 0.50 16 46 H 0.05 0.70 6.71 -51.93 -0.35 0.35 16 47 H 0.07 1.26 6.78 -51.93 -0.35 0.91 16 48 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.39 9.93 6.19 -40.82 -0.25 9.67 16 51 H 0.26 7.47 8.31 -40.81 -0.34 7.13 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -32.69 399.16 -10.35 -43.04 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -7.92 Total: 9.63 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -3.27 Total: -6.23 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.23 Total: -59.99 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.69 -10.35 -43.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182001207.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.419 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds