Wall clock time and date at job start Wed Apr 1 2020 03:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.30265 * 2 1 4 4 C 1.54392 * 110.43248 * 237.76345 * 2 1 3 5 5 N 1.48147 * 104.61886 * 264.95364 * 4 2 1 6 6 C 1.34773 * 127.84096 * 140.39586 * 5 4 2 7 7 O 1.21551 * 120.00184 * 175.19773 * 6 5 4 8 8 C 1.47842 * 119.99639 * 355.18985 * 6 5 4 9 9 C 1.40024 * 120.55783 * 43.35382 * 8 6 5 10 10 C 1.38361 * 118.28592 * 179.73172 * 9 8 6 11 11 C 1.38354 * 119.29930 * 0.55519 * 10 9 8 12 12 N 1.31922 * 121.08599 * 359.70277 * 11 10 9 13 13 C 1.31699 * 121.87634 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.71399 * 179.97438 * 13 12 11 15 15 C 1.52999 * 117.50183 * 2.18540 * 14 13 12 16 16 C 1.53000 * 117.49877 * 293.55938 * 14 13 12 17 17 C 1.48148 * 104.31871 * 320.41227 * 5 4 2 18 18 C 1.54289 * 110.34407 * 122.17635 * 2 1 3 19 19 C 1.53001 * 110.33842 * 359.97438 * 18 2 1 20 20 C 1.52995 * 110.34151 * 237.85083 * 18 2 1 21 21 N 1.46502 * 109.47042 * 180.02562 * 20 18 2 22 22 C 1.36941 * 119.99778 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99914 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99538 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00214 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99958 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47100 * 90.00083 * 26 24 22 28 28 H 1.48495 * 109.47588 * 210.00295 * 26 24 22 29 29 H 1.48505 * 109.46885 * 330.00654 * 26 24 22 30 30 H 1.08999 * 109.47147 * 297.82357 * 1 2 3 31 31 H 1.09004 * 109.47357 * 57.82499 * 1 2 3 32 32 H 1.08999 * 109.47121 * 177.82424 * 1 2 3 33 33 H 1.09001 * 110.40605 * 23.73317 * 4 2 1 34 34 H 1.08997 * 110.40778 * 146.04456 * 4 2 1 35 35 H 1.08002 * 120.85722 * 359.97438 * 9 8 6 36 36 H 1.08002 * 120.34920 * 180.26025 * 10 9 8 37 37 H 1.08002 * 119.45445 * 179.72292 * 11 10 9 38 38 H 1.08999 * 115.54474 * 147.89448 * 14 13 12 39 39 H 1.09001 * 117.49725 * 359.97438 * 15 14 13 40 40 H 1.08995 * 117.49921 * 145.01675 * 15 14 13 41 41 H 1.08998 * 117.49509 * 214.97628 * 16 14 13 42 42 H 1.08997 * 117.49968 * 0.02562 * 16 14 13 43 43 H 1.09001 * 110.41089 * 280.79885 * 17 5 4 44 44 H 1.09000 * 110.40370 * 158.37189 * 17 5 4 45 45 H 1.08996 * 109.47420 * 298.52694 * 19 18 2 46 46 H 1.08998 * 109.47476 * 58.52710 * 19 18 2 47 47 H 1.09000 * 109.46839 * 178.52739 * 19 18 2 48 48 H 1.09005 * 109.46906 * 299.99567 * 20 18 2 49 49 H 1.09000 * 109.47726 * 59.99804 * 20 18 2 50 50 H 0.96996 * 120.00132 * 359.97438 * 21 20 18 51 51 H 0.97011 * 120.00088 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7717 -1.2238 5 7 2.3177 -2.1430 -0.7212 6 6 2.0831 -3.3102 -1.3528 7 8 2.4233 -4.3582 -0.8394 8 6 1.4118 -3.3161 -2.6700 9 6 1.7707 -2.3889 -3.6560 10 6 1.1158 -2.4403 -4.8737 11 6 0.1288 -3.3893 -5.0722 12 7 -0.1922 -4.2470 -4.1227 13 6 0.4064 -4.2422 -2.9497 14 6 0.0005 -5.2442 -1.8998 15 6 -1.0726 -6.2674 -2.2771 16 6 -1.4090 -5.1247 -1.3167 17 6 2.8824 -1.9400 0.6333 18 6 2.0664 -0.7704 1.2245 19 6 0.9061 -1.3010 2.0690 20 6 2.9670 0.1334 2.0687 21 7 3.4657 -0.6163 3.2243 22 6 4.2969 -0.0092 4.1275 23 1 4.5852 1.0222 3.9876 24 6 4.7689 -0.7195 5.2228 25 7 4.4180 -1.9765 5.3929 26 14 5.9034 0.1084 6.4545 27 1 5.0932 0.7400 7.5269 28 1 6.8104 -0.9048 7.0510 29 1 6.7083 1.1484 5.7647 30 1 -0.3633 0.4797 0.9088 31 1 -0.3634 0.5472 -0.8699 32 1 -0.3633 -1.0269 -0.0390 33 1 1.3253 -0.7881 -2.0205 34 1 2.9957 -0.3213 -1.5792 35 1 2.5416 -1.6552 -3.4721 36 1 1.3692 -1.7438 -5.6594 37 1 -0.3871 -3.4287 -6.0202 38 1 0.7959 -5.5720 -1.2305 39 1 -1.4853 -6.2156 -3.2846 40 1 -0.9832 -7.2688 -1.8562 41 1 -1.5409 -5.3746 -0.2640 42 1 -2.0428 -4.3217 -1.6928 43 1 3.9373 -1.6733 0.5693 44 1 2.7524 -2.8378 1.2376 45 1 0.3111 -0.4645 2.4353 46 1 0.2805 -1.9521 1.4586 47 1 1.3003 -1.8643 2.9148 48 1 3.8091 0.4728 1.4654 49 1 2.3961 0.9956 2.4134 50 1 3.2071 -1.5427 3.3497 51 1 4.7482 -2.4730 6.1581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182001207.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:31 Heat of formation + Delta-G solvation = 26.681415 kcal Electronic energy + Delta-G solvation = -31010.682238 eV Core-core repulsion = 27103.448503 eV Total energy + Delta-G solvation = -3907.233735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.06910 -40.94961 -39.29085 -37.86948 -36.52280 -34.76598 -33.49181 -33.07951 -32.21150 -31.18375 -28.72568 -27.45990 -26.73078 -25.53447 -25.50050 -24.59933 -23.28001 -22.48679 -21.84032 -20.89150 -19.88654 -19.20053 -18.24210 -18.00276 -17.36793 -17.11522 -16.89130 -16.43625 -16.18145 -15.62580 -15.46781 -15.40248 -15.22245 -14.88154 -14.75944 -14.62897 -14.48677 -14.21743 -13.83460 -13.74841 -13.41475 -13.23136 -13.04980 -12.85875 -12.81567 -12.62379 -12.46660 -12.45411 -12.41276 -12.09021 -11.96296 -11.78047 -11.52050 -11.48134 -11.41324 -11.27124 -11.14379 -10.92153 -10.84934 -10.44735 -9.92801 -9.74265 -8.96590 -7.92850 -5.21180 -0.28854 0.15970 1.47177 1.48878 1.55295 1.57199 1.83347 2.55674 2.56947 2.99821 3.15854 3.25048 3.40994 3.51145 3.54274 3.68366 3.77816 3.87172 3.95215 4.08370 4.13890 4.17528 4.19931 4.22825 4.26659 4.32186 4.46556 4.50912 4.59616 4.64862 4.69360 4.70787 4.75143 4.81350 4.85237 4.93391 4.97971 5.00254 5.03297 5.05542 5.05880 5.13090 5.16924 5.23836 5.26808 5.36002 5.42571 5.51972 5.56865 5.62636 6.28705 6.44651 6.89134 6.97668 7.35397 8.12853 8.34260 9.30789 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.002764 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.725421 B =10127.726282 C =10672.091922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.110 0.890 4 C 0.098 3.902 5 N -0.608 5.608 6 C 0.579 3.421 7 O -0.579 6.579 8 C -0.189 4.189 9 C -0.044 4.044 10 C -0.167 4.167 11 C 0.119 3.881 12 N -0.501 5.501 13 C 0.197 3.803 14 C -0.156 4.156 15 C -0.142 4.142 16 C -0.153 4.153 17 C 0.126 3.874 18 C -0.065 4.065 19 C -0.122 4.122 20 C 0.168 3.832 21 N -0.744 5.744 22 C -0.239 4.239 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.972 3.028 27 H -0.288 1.288 28 H -0.300 1.300 29 H -0.267 1.267 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.161 0.839 36 H 0.184 0.816 37 H 0.196 0.804 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.027 0.973 48 H 0.029 0.971 49 H 0.031 0.969 50 H 0.373 0.627 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.806 3.534 -26.048 29.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.128 0.872 4 C -0.023 4.023 5 N -0.339 5.339 6 C 0.369 3.631 7 O -0.459 6.459 8 C -0.194 4.194 9 C -0.070 4.070 10 C -0.186 4.186 11 C -0.038 4.038 12 N -0.210 5.210 13 C 0.060 3.940 14 C -0.175 4.175 15 C -0.179 4.179 16 C -0.191 4.191 17 C 0.003 3.997 18 C -0.066 4.066 19 C -0.180 4.180 20 C 0.041 3.959 21 N -0.387 5.387 22 C -0.371 4.371 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.801 3.199 27 H -0.215 1.215 28 H -0.227 1.227 29 H -0.192 1.192 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.178 0.822 36 H 0.201 0.799 37 H 0.213 0.787 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.049 0.951 50 H 0.206 0.794 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.191 2.443 -25.943 29.207 hybrid contribution 1.659 0.067 1.791 2.442 sum -11.533 2.510 -24.152 26.882 Atomic orbital electron populations 1.21869 0.93360 1.01422 1.02832 1.22158 0.97176 0.99939 0.91585 0.87182 1.22962 1.02435 0.79512 0.97429 1.48922 1.61544 1.06373 1.17084 1.18116 0.78042 0.81980 0.84940 1.90736 1.54227 1.32422 1.68551 1.20496 1.01973 1.01532 0.95403 1.22125 0.97711 0.94859 0.92258 1.22516 0.96988 1.01149 0.97937 1.23657 0.93514 0.88695 0.97939 1.67486 1.27921 1.25050 1.00567 1.20314 0.90149 0.91794 0.91781 1.21263 0.94508 1.01401 1.00320 1.22960 0.99645 0.94202 1.01075 1.22947 0.94655 1.01847 0.99611 1.22231 0.97054 0.97971 0.82454 1.21568 0.95119 0.94459 0.95491 1.21758 0.97118 1.00738 0.98344 1.20894 0.94359 0.93223 0.87415 1.42645 1.57180 1.12779 1.26114 1.19650 1.19689 0.96022 1.01733 0.90284 1.25561 1.03432 0.96742 1.01311 1.69837 1.50862 1.10051 1.31536 0.85158 0.78402 0.77143 0.79170 1.21475 1.22702 1.19181 0.92020 0.90389 0.93886 0.87858 0.88406 0.82162 0.79851 0.78711 0.87050 0.87013 0.87725 0.88135 0.88366 0.91607 0.93482 0.91287 0.92607 0.95367 0.95361 0.95135 0.79449 0.94235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.93 71.98 0.57 -1.90 16 2 C -0.09 -1.80 3.30 -9.88 -0.03 -1.84 16 3 H 0.11 1.86 7.71 -2.39 -0.02 1.84 16 4 C 0.10 1.78 5.11 86.54 0.44 2.22 16 5 N -0.61 -16.96 3.32 -811.36 -2.69 -19.65 16 6 C 0.58 18.30 7.12 86.79 0.62 18.92 16 7 O -0.58 -23.62 14.93 -3.87 -0.06 -23.68 16 8 C -0.19 -4.63 5.42 -19.99 -0.11 -4.73 16 9 C -0.04 -0.67 7.94 22.73 0.18 -0.49 16 10 C -0.17 -1.66 10.10 22.33 0.23 -1.44 16 11 C 0.12 1.52 11.17 84.71 0.95 2.47 16 12 N -0.50 -10.45 9.28 -182.84 -1.70 -12.14 16 13 C 0.20 4.99 6.49 42.89 0.28 5.27 16 14 C -0.16 -4.25 5.38 -11.54 -0.06 -4.31 16 15 C -0.14 -3.05 10.02 30.60 0.31 -2.75 16 16 C -0.15 -3.45 10.23 30.60 0.31 -3.14 16 17 C 0.13 4.33 5.69 86.53 0.49 4.82 16 18 C -0.07 -1.97 0.73 -51.28 -0.04 -2.01 16 19 C -0.12 -3.98 7.07 71.98 0.51 -3.47 16 20 C 0.17 6.23 4.87 86.38 0.42 6.65 16 21 N -0.74 -37.20 5.13 -343.45 -1.76 -38.96 16 22 C -0.24 -13.22 9.99 84.03 0.84 -12.38 16 23 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 24 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 25 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 26 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 27 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 28 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 29 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 30 H 0.06 1.16 6.84 -2.39 -0.02 1.14 16 31 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.04 0.90 6.76 -2.39 -0.02 0.89 16 33 H 0.10 1.41 5.78 -2.39 -0.01 1.40 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.16 1.78 6.76 -2.91 -0.02 1.76 16 36 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 37 H 0.20 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.11 3.76 5.85 -2.39 -0.01 3.75 16 39 H 0.11 2.27 7.54 -2.39 -0.02 2.26 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 2.41 7.83 -2.39 -0.02 2.39 16 44 H 0.05 1.97 7.65 -2.39 -0.02 1.96 16 45 H 0.07 2.05 6.89 -2.39 -0.02 2.04 16 46 H 0.05 1.70 6.71 -2.39 -0.02 1.69 16 47 H 0.03 1.12 6.78 -2.39 -0.02 1.10 16 48 H 0.03 1.03 8.10 -2.38 -0.02 1.01 16 49 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 50 H 0.37 20.40 6.19 -92.71 -0.57 19.82 16 51 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -76.99 399.16 2.84 -74.15 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: 0.37 Total: 34.47 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 6.37 Total: -2.18 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -5.87 Total: -131.37 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.06 Total: -23.68 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -76.99 2.84 -74.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182001207.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.834 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds