Wall clock time and date at job start Wed Apr 1 2020 03:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.39273 * 2 1 4 4 C 1.54400 * 110.33950 * 237.77401 * 2 1 3 5 5 N 1.48147 * 104.71851 * 217.20367 * 4 2 1 6 6 C 1.34771 * 127.83501 * 219.63770 * 5 4 2 7 7 O 1.21522 * 120.00348 * 356.87409 * 6 5 4 8 8 C 1.48154 * 120.00045 * 176.87472 * 6 5 4 9 9 C 1.39833 * 120.91788 * 28.51685 * 8 6 5 10 10 C 1.38131 * 119.00117 * 179.97438 * 9 8 6 11 11 N 1.31830 * 120.89340 * 0.02875 * 10 9 8 12 12 C 1.31796 * 122.05299 * 359.97239 * 11 10 9 13 13 C 1.50700 * 119.55107 * 180.02562 * 12 11 10 14 14 C 1.53001 * 117.49365 * 163.74629 * 13 12 11 15 15 C 1.53006 * 117.49728 * 95.09119 * 13 12 11 16 16 C 1.38176 * 120.89407 * 359.71592 * 12 11 10 17 17 C 1.48433 * 104.17829 * 39.57225 * 5 4 2 18 18 C 1.54283 * 110.34487 * 122.23819 * 2 1 3 19 19 C 1.52996 * 110.34437 * 359.97438 * 18 2 1 20 20 C 1.52995 * 110.34514 * 237.84121 * 18 2 1 21 21 N 1.46495 * 109.47273 * 179.97438 * 20 18 2 22 22 C 1.36944 * 119.99804 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00249 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99855 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99788 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00089 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46910 * 60.00490 * 26 24 22 28 28 H 1.48495 * 109.47240 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47304 * 300.00447 * 26 24 22 30 30 H 1.08995 * 109.47122 * 180.77501 * 1 2 3 31 31 H 1.09004 * 109.46844 * 300.77385 * 1 2 3 32 32 H 1.08999 * 109.47416 * 60.76746 * 1 2 3 33 33 H 1.08994 * 110.40464 * 336.04560 * 4 2 1 34 34 H 1.08999 * 110.40216 * 98.35846 * 4 2 1 35 35 H 1.08002 * 120.50433 * 0.02882 * 9 8 6 36 36 H 1.07995 * 119.55191 * 179.97438 * 10 9 8 37 37 H 1.09000 * 115.54861 * 309.41331 * 13 12 11 38 38 H 1.08999 * 117.50065 * 0.02562 * 14 13 12 39 39 H 1.09000 * 117.49568 * 145.02278 * 14 13 12 40 40 H 1.09003 * 117.49403 * 214.97984 * 15 13 12 41 41 H 1.08992 * 117.49745 * 359.96927 * 15 13 12 42 42 H 1.07993 * 120.49883 * 180.29248 * 16 12 11 43 43 H 1.09000 * 110.38419 * 201.64402 * 17 5 4 44 44 H 1.08998 * 110.49155 * 79.29136 * 17 5 4 45 45 H 1.09004 * 109.46995 * 59.99460 * 19 18 2 46 46 H 1.08996 * 109.47302 * 180.02562 * 19 18 2 47 47 H 1.09004 * 109.46993 * 300.00417 * 19 18 2 48 48 H 1.08998 * 109.47416 * 300.00283 * 20 18 2 49 49 H 1.09007 * 109.46500 * 59.99733 * 20 18 2 50 50 H 0.96995 * 120.00325 * 359.97438 * 21 20 18 51 51 H 0.96996 * 119.99508 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0666 -0.7720 -1.2247 5 7 3.2676 -1.4816 -0.7257 6 6 4.4427 -1.6646 -1.3597 7 8 4.5859 -1.2696 -2.5000 8 6 5.5600 -2.3472 -0.6664 9 6 5.3141 -3.2979 0.3291 10 6 6.3856 -3.9105 0.9493 11 7 7.6245 -3.6091 0.6143 12 6 7.9002 -2.7194 -0.3181 13 6 9.3375 -2.4185 -0.6567 14 6 9.6153 -1.6880 -1.9720 15 6 9.9589 -3.1733 -1.8337 16 6 6.8891 -2.0634 -0.9939 17 6 2.8801 -1.9423 0.6311 18 6 2.0664 -0.7717 1.2236 19 6 0.9063 -1.3032 2.0676 20 6 2.9672 0.1311 2.0687 21 7 3.4649 -0.6195 3.2241 22 6 4.2952 -0.0131 4.1286 23 1 4.5829 1.0186 3.9903 24 6 4.7664 -0.7242 5.2237 25 7 4.4153 -1.9814 5.3925 26 14 5.8996 0.1028 6.4570 27 1 5.2082 1.2712 7.0586 28 1 6.2587 -0.8642 7.5252 29 1 7.1333 0.5587 5.7675 30 1 -0.3633 -1.0275 0.0139 31 1 -0.3633 0.5258 0.8830 32 1 -0.3634 0.5018 -0.8968 33 1 1.3234 -1.4859 -1.5795 34 1 2.3380 -0.0794 -2.0214 35 1 4.3018 -3.5501 0.6083 36 1 6.2060 -4.6458 1.7197 37 1 9.9824 -2.1903 0.1919 38 1 8.7586 -1.4247 -2.5922 39 1 10.4435 -0.9795 -1.9889 40 1 11.0129 -3.4412 -1.7595 41 1 9.3283 -3.8877 -2.3627 42 1 7.1222 -1.3389 -1.7601 43 1 3.7672 -2.1327 1.2351 44 1 2.2645 -2.8396 0.5680 45 1 0.2953 -1.9743 1.4638 46 1 1.3007 -1.8448 2.9273 47 1 0.2961 -0.4686 2.4131 48 1 3.8092 0.4711 1.4658 49 1 2.3962 0.9930 2.4142 50 1 3.2056 -1.5458 3.3490 51 1 4.7443 -2.4782 6.1579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182018893.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:36 Heat of formation + Delta-G solvation = 34.612297 kcal Electronic energy + Delta-G solvation = -31167.902374 eV Core-core repulsion = 27261.012547 eV Total energy + Delta-G solvation = -3906.889827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.07974 -41.00744 -39.49276 -37.93046 -36.45085 -34.91964 -33.83627 -33.06077 -31.98572 -31.13241 -28.47258 -27.52001 -26.93586 -25.82860 -25.26254 -24.81320 -23.24110 -22.70004 -22.03664 -20.70753 -19.86423 -19.13497 -18.47365 -17.83784 -17.32910 -16.92488 -16.71228 -16.62544 -16.21364 -16.06458 -15.73007 -15.39488 -15.35480 -15.16575 -14.96694 -14.60902 -14.50250 -14.41026 -13.89008 -13.52020 -13.20633 -13.02259 -12.95150 -12.89288 -12.75652 -12.62642 -12.60375 -12.33221 -12.29215 -12.11254 -11.95819 -11.77265 -11.61162 -11.46700 -11.41855 -11.26284 -11.19259 -10.98591 -10.93094 -10.50854 -9.95938 -9.86543 -8.96081 -7.94201 -5.20213 -0.36194 -0.02475 1.45075 1.46409 1.51813 1.52083 1.76301 2.54736 2.56321 2.85432 3.09663 3.17402 3.38310 3.46750 3.61274 3.67605 3.74818 3.79506 3.89847 3.96400 4.11364 4.12052 4.17074 4.19872 4.33768 4.36321 4.39224 4.53162 4.59391 4.60810 4.69203 4.70976 4.74838 4.79091 4.80538 4.85489 4.89464 4.97549 5.00997 5.07215 5.11491 5.13919 5.20367 5.22020 5.28297 5.39110 5.44339 5.49901 5.51383 5.66313 6.27057 6.28868 6.83112 6.85227 7.37213 8.10392 8.37789 9.28005 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007080 B = 0.004998 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3953.685074 B = 5600.669785 C = 8606.133094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.071 0.929 4 C 0.110 3.890 5 N -0.608 5.608 6 C 0.580 3.420 7 O -0.569 6.569 8 C -0.093 4.093 9 C -0.146 4.146 10 C 0.100 3.900 11 N -0.485 5.485 12 C 0.147 3.853 13 C -0.131 4.131 14 C -0.163 4.163 15 C -0.148 4.148 16 C -0.128 4.128 17 C 0.092 3.908 18 C -0.069 4.069 19 C -0.128 4.128 20 C 0.170 3.830 21 N -0.731 5.731 22 C -0.246 4.246 23 H 0.062 0.938 24 C -0.058 4.058 25 N -0.956 5.956 26 Si 0.957 3.043 27 H -0.279 1.279 28 H -0.292 1.292 29 H -0.288 1.288 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.148 0.852 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.041 0.959 47 H 0.064 0.936 48 H -0.004 1.004 49 H 0.019 0.981 50 H 0.380 0.620 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.573 -2.383 -15.266 15.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 H 0.090 0.910 4 C -0.012 4.012 5 N -0.338 5.338 6 C 0.369 3.631 7 O -0.449 6.449 8 C -0.104 4.104 9 C -0.166 4.166 10 C -0.056 4.056 11 N -0.194 5.194 12 C 0.010 3.990 13 C -0.150 4.150 14 C -0.200 4.200 15 C -0.185 4.185 16 C -0.148 4.148 17 C -0.030 4.030 18 C -0.070 4.070 19 C -0.185 4.185 20 C 0.043 3.957 21 N -0.376 5.376 22 C -0.378 4.378 23 H 0.080 0.920 24 C -0.252 4.252 25 N -0.606 5.606 26 Si 0.787 3.213 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.215 1.215 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.180 0.820 36 H 0.197 0.803 37 H 0.141 0.859 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.108 0.892 42 H 0.166 0.834 43 H 0.100 0.900 44 H 0.123 0.877 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.083 0.917 48 H 0.013 0.987 49 H 0.037 0.963 50 H 0.215 0.785 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.657 -2.471 -15.420 15.704 hybrid contribution 0.103 0.673 0.906 1.133 sum -1.554 -1.798 -14.513 14.707 Atomic orbital electron populations 1.21861 0.91356 1.03404 1.02666 1.22115 0.98170 0.98702 0.91959 0.91031 1.22656 0.85454 0.96108 0.96938 1.48889 1.12471 1.54479 1.18001 1.17848 0.81334 0.78900 0.84975 1.90726 1.82469 1.53238 1.18516 1.20313 0.94128 0.98335 0.97592 1.22834 1.02732 0.96306 0.94678 1.23112 0.86782 0.98098 0.97639 1.67295 1.23828 1.14441 1.13851 1.20682 0.95424 0.91553 0.91349 1.20837 0.90879 1.08669 0.94631 1.23222 1.04187 0.95802 0.96749 1.23053 1.02361 0.94819 0.98306 1.22092 0.91261 1.00701 1.00755 1.23197 1.00228 0.97861 0.81683 1.21612 0.95579 0.94759 0.95040 1.21838 0.96255 1.01484 0.98916 1.20718 0.93685 0.93705 0.87563 1.42433 1.56964 1.12813 1.25354 1.19414 1.20572 0.95623 1.02223 0.91980 1.25280 1.02644 0.96748 1.00526 1.69731 1.50164 1.09238 1.31433 0.85472 0.79156 0.77529 0.79166 1.20533 1.21780 1.21501 0.90566 0.91803 0.91216 0.88161 0.90604 0.82022 0.80263 0.85907 0.88561 0.85857 0.86005 0.89235 0.83421 0.90043 0.87715 0.89527 0.94036 0.91655 0.98657 0.96300 0.78540 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 7.93 71.98 0.57 -1.52 16 2 C -0.09 -1.97 3.31 -9.88 -0.03 -2.00 16 3 H 0.07 1.75 7.71 -2.39 -0.02 1.73 16 4 C 0.11 2.48 6.57 86.54 0.57 3.05 16 5 N -0.61 -17.32 3.33 -810.24 -2.70 -20.01 16 6 C 0.58 19.42 7.72 86.88 0.67 20.09 16 7 O -0.57 -21.45 17.05 -3.78 -0.06 -21.52 16 8 C -0.09 -3.06 5.75 -19.88 -0.11 -3.18 16 9 C -0.15 -4.49 8.02 22.63 0.18 -4.31 16 10 C 0.10 3.19 11.17 84.67 0.95 4.13 16 11 N -0.48 -16.40 10.25 -184.04 -1.89 -18.29 16 12 C 0.15 4.61 6.46 42.55 0.27 4.88 16 13 C -0.13 -3.24 6.21 -11.54 -0.07 -3.31 16 14 C -0.16 -3.08 9.80 30.62 0.30 -2.78 16 15 C -0.15 -2.81 10.24 30.62 0.31 -2.50 16 16 C -0.13 -4.07 8.94 22.63 0.20 -3.87 16 17 C 0.09 2.54 4.19 86.48 0.36 2.90 16 18 C -0.07 -1.90 0.73 -51.28 -0.04 -1.93 16 19 C -0.13 -3.16 7.10 71.98 0.51 -2.65 16 20 C 0.17 6.55 4.95 86.38 0.43 6.97 16 21 N -0.73 -34.78 4.79 -343.46 -1.64 -36.43 16 22 C -0.25 -13.49 9.99 84.03 0.84 -12.65 16 23 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 24 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 25 N -0.96 -55.43 13.06 21.65 0.28 -55.15 16 26 Si 0.96 45.94 29.55 68.60 2.03 47.97 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 30 H 0.08 0.98 6.61 -2.39 -0.02 0.97 16 31 H 0.06 1.04 6.98 -2.39 -0.02 1.02 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 1.76 7.86 -2.39 -0.02 1.74 16 34 H 0.08 1.82 7.91 -2.39 -0.02 1.80 16 35 H 0.16 4.37 5.27 -2.91 -0.02 4.35 16 36 H 0.18 4.90 8.06 -2.91 -0.02 4.88 16 37 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.10 1.92 6.37 -2.39 -0.02 1.90 16 39 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.15 4.39 6.15 -2.91 -0.02 4.37 16 43 H 0.08 2.74 4.36 -2.39 -0.01 2.73 16 44 H 0.10 2.27 7.78 -2.39 -0.02 2.26 16 45 H 0.09 1.56 6.68 -2.38 -0.02 1.54 16 46 H 0.04 1.28 6.74 -2.39 -0.02 1.26 16 47 H 0.06 1.58 6.89 -2.39 -0.02 1.56 16 48 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 50 H 0.38 18.50 5.99 -92.71 -0.55 17.94 16 51 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -69.66 398.42 2.80 -66.86 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: 0.40 Total: 38.05 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 6.38 Total: -1.49 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.94 Total: -129.88 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -69.66 2.80 -66.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182018893.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.473 kcal (2) G-P(sol) polarization free energy of solvation -69.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds