Wall clock time and date at job start Wed Apr 1 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46935 * 2 1 4 4 H 1.08996 * 109.47469 * 54.99584 * 3 2 1 5 5 F 1.39903 * 109.47029 * 294.99488 * 3 2 1 6 6 C 1.50701 * 109.46860 * 175.00028 * 3 2 1 7 7 O 1.21277 * 120.00249 * 44.99653 * 6 3 2 8 8 N 1.34779 * 119.99912 * 224.99792 * 6 3 2 9 9 C 1.48154 * 127.83620 * 359.97400 * 8 6 3 10 10 C 1.54389 * 104.61546 * 219.60517 * 9 8 6 11 11 H 1.09004 * 110.34207 * 95.00433 * 10 9 8 12 12 C 1.53002 * 110.34408 * 217.26466 * 10 9 8 13 13 C 1.54291 * 104.96120 * 336.13487 * 10 9 8 14 14 C 1.53001 * 110.43033 * 241.08275 * 13 10 9 15 15 C 1.53000 * 110.34093 * 118.87189 * 13 10 9 16 16 N 1.46901 * 109.46855 * 183.00592 * 15 13 10 17 17 C 1.46898 * 111.00189 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46850 * 90.00463 * 25 23 21 27 27 H 1.48504 * 109.47159 * 210.00116 * 25 23 21 28 28 H 1.48497 * 109.47216 * 330.00562 * 25 23 21 29 29 C 1.48145 * 127.83812 * 179.97438 * 8 6 3 30 30 H 1.08998 * 109.47476 * 300.00356 * 1 2 3 31 31 H 1.09006 * 109.47085 * 60.00204 * 1 2 3 32 32 H 1.09005 * 109.47406 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46740 * 239.99568 * 2 1 3 34 34 H 1.09001 * 109.46417 * 119.99998 * 2 1 3 35 35 H 1.08996 * 110.40460 * 338.38973 * 9 8 6 36 36 H 1.08999 * 110.40377 * 100.70516 * 9 8 6 37 37 H 1.08995 * 109.47391 * 175.53881 * 12 10 9 38 38 H 1.09005 * 109.46417 * 295.53695 * 12 10 9 39 39 H 1.08996 * 109.47011 * 55.53382 * 12 10 9 40 40 H 1.09002 * 109.47445 * 298.46556 * 14 13 10 41 41 H 1.09002 * 109.47163 * 58.46564 * 14 13 10 42 42 H 1.09001 * 109.47205 * 178.46473 * 14 13 10 43 43 H 1.08998 * 109.47488 * 63.00794 * 15 13 10 44 44 H 1.08993 * 109.47041 * 303.00422 * 15 13 10 45 45 H 1.00907 * 110.99760 * 56.04664 * 16 15 13 46 46 H 1.09000 * 109.46741 * 60.00112 * 17 16 15 47 47 H 1.09002 * 109.46898 * 300.00102 * 17 16 15 48 48 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 49 49 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 50 50 H 1.08993 * 110.41008 * 21.61383 * 29 8 6 51 51 H 1.09000 * 110.50361 * 259.22464 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8417 5 9 1.6699 2.0679 -1.1955 6 6 3.5419 1.4442 0.1238 7 8 4.2064 0.6810 -0.5445 8 7 4.1467 2.2940 0.9774 9 6 3.5111 3.2917 1.8694 10 6 4.4380 4.5244 1.7981 11 1 4.0735 5.2299 1.0514 12 6 4.5318 5.1992 3.1681 13 6 5.8138 3.9646 1.3806 14 6 6.8581 4.2534 2.4609 15 6 6.2508 4.5690 0.0447 16 7 7.5267 3.9703 -0.3695 17 6 7.9780 4.5275 -1.6516 18 6 9.2863 3.8905 -2.0435 19 8 9.7927 3.0542 -1.3256 20 7 9.8931 4.2493 -3.1922 21 6 11.0837 3.6701 -3.5485 22 1 11.5350 2.9262 -2.9089 23 6 11.7064 4.0359 -4.7356 24 7 11.1545 4.9373 -5.5165 25 14 13.3281 3.2463 -5.2213 26 1 13.0634 2.0266 -6.0258 27 1 14.1249 4.2069 -6.0262 28 1 14.0853 2.8779 -3.9981 29 6 5.5977 2.4424 1.2366 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 2.5143 3.5443 1.5079 36 1 3.4595 2.9112 2.8895 37 1 5.2495 6.0182 3.1213 38 1 3.5533 5.5891 3.4487 39 1 4.8593 4.4711 3.9101 40 1 6.9623 5.3311 2.5868 41 1 6.5396 3.8068 3.4028 42 1 7.8164 3.8281 2.1629 43 1 6.3741 5.6462 0.1562 44 1 5.4921 4.3665 -0.7111 45 1 7.4557 2.9649 -0.4175 46 1 8.1132 5.6045 -1.5522 47 1 7.2311 4.3243 -2.4191 48 1 9.4879 4.9178 -3.7665 49 1 11.5895 5.1929 -6.3449 50 1 6.1753 2.0542 0.3977 51 1 5.8754 1.9300 2.1577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182208589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:16 Heat of formation + Delta-G solvation = -122.502898 kcal Electronic energy + Delta-G solvation = -31046.571144 eV Core-core repulsion = 26702.099066 eV Total energy + Delta-G solvation = -4344.472077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -48.20087 -40.74581 -38.77315 -38.10606 -35.42819 -34.37658 -33.93486 -33.53816 -31.32076 -31.00999 -28.78776 -27.69278 -26.57501 -25.95800 -25.20163 -23.75191 -22.41510 -21.63947 -19.86918 -19.31481 -18.75893 -18.06705 -17.77307 -16.94229 -16.65597 -16.14647 -15.74961 -15.66083 -15.29462 -14.99555 -14.68439 -14.46442 -14.35717 -14.10233 -13.95733 -13.79025 -13.39267 -13.35060 -13.25901 -12.96824 -12.71826 -12.52288 -12.31043 -12.24075 -12.17745 -12.06773 -11.63907 -11.62496 -11.52256 -11.48980 -11.43297 -11.29402 -11.00836 -10.81793 -10.65398 -10.56125 -10.36002 -10.17536 -10.00595 -9.46688 -9.08332 -8.41481 -8.01818 -7.91410 -6.37547 -3.78125 2.12526 2.43591 3.21228 3.29343 3.35553 3.79386 3.95495 4.02407 4.05012 4.15170 4.18299 4.27780 4.42228 4.47646 4.59263 4.81871 4.89619 4.97156 4.98271 5.02271 5.06280 5.12706 5.21162 5.21787 5.29827 5.36220 5.46061 5.48356 5.49576 5.63049 5.65359 5.67419 5.69926 5.73117 5.78092 5.83028 5.85102 5.93537 6.01941 6.09283 6.11600 6.30888 6.45946 7.12760 7.22727 7.59341 7.66282 7.71189 8.10711 8.65790 9.22144 9.58891 10.10440 10.80352 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.002426 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.091330 B =11539.344745 C =12997.327875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.142 4.142 3 C 0.086 3.914 4 H 0.099 0.901 5 F -0.188 7.188 6 C 0.509 3.491 7 O -0.514 6.514 8 N -0.618 5.618 9 C 0.099 3.901 10 C -0.099 4.099 11 H 0.084 0.916 12 C -0.143 4.143 13 C -0.065 4.065 14 C -0.131 4.131 15 C 0.072 3.928 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.442 3.558 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.109 3.891 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.026 0.974 45 H 0.347 0.653 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.088 0.912 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.447 -0.424 17.588 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C 0.047 3.953 4 H 0.116 0.884 5 F -0.169 7.169 6 C 0.295 3.705 7 O -0.388 6.388 8 N -0.352 5.352 9 C -0.023 4.023 10 C -0.118 4.118 11 H 0.102 0.898 12 C -0.200 4.200 13 C -0.067 4.067 14 C -0.189 4.189 15 C -0.057 4.057 16 N -0.299 5.299 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.013 4.013 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.044 0.956 45 H 0.168 0.832 46 H 0.104 0.896 47 H 0.060 0.940 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.106 0.894 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.342 -0.981 17.770 28.564 hybrid contribution -0.128 -0.154 -1.473 1.487 sum -22.470 -1.136 16.297 27.781 Atomic orbital electron populations 1.21773 0.94003 1.02744 1.02487 1.22006 0.97343 0.93429 1.05208 1.21631 0.91716 0.96378 0.85593 0.88364 1.92898 1.91938 1.83875 1.48199 1.20622 0.90130 0.80291 0.79423 1.90792 1.65966 1.38892 1.43147 1.49045 1.08963 1.36820 1.40374 1.22647 0.97125 0.88295 0.94282 1.22172 0.94492 0.96239 0.98935 0.89753 1.21899 1.01826 1.00926 0.95342 1.21539 0.94745 0.93732 0.96635 1.21832 0.99042 1.01993 0.95997 1.21988 0.90301 0.99383 0.94078 1.60183 1.28032 1.11275 1.30432 1.21661 0.96114 1.00159 0.90286 1.19792 0.87322 0.86648 0.83477 1.90516 1.67082 1.36021 1.53049 1.41864 1.21194 1.37972 1.19088 1.19704 0.97465 1.20786 1.04790 0.87932 1.25265 0.99911 0.96892 0.95962 1.69618 1.40072 1.31508 1.13205 0.85854 0.81201 0.78545 0.78669 1.20435 1.20940 1.19404 1.22605 0.80350 0.95885 1.02458 0.92384 0.91841 0.91585 0.89254 0.89779 0.90327 0.90277 0.91448 0.92735 0.91898 0.92043 0.92889 0.90535 0.90640 0.95623 0.83153 0.89595 0.94003 0.77478 0.91915 0.89403 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.83 37.16 0.37 -0.54 16 2 C -0.14 -1.14 5.41 -26.73 -0.14 -1.29 16 3 C 0.09 0.80 3.49 -27.89 -0.10 0.70 16 4 H 0.10 0.58 6.35 -51.93 -0.33 0.25 16 5 F -0.19 -2.20 16.75 2.25 0.04 -2.16 16 6 C 0.51 6.38 7.25 -10.98 -0.08 6.30 16 7 O -0.51 -8.77 16.87 5.56 0.09 -8.68 16 8 N -0.62 -6.45 3.32 -169.29 -0.56 -7.01 16 9 C 0.10 0.66 6.24 -2.40 -0.01 0.64 16 10 C -0.10 -0.71 3.31 -89.21 -0.30 -1.00 16 11 H 0.08 0.62 7.71 -51.93 -0.40 0.22 16 12 C -0.14 -0.77 7.95 37.16 0.30 -0.47 16 13 C -0.07 -0.65 0.82 -153.09 -0.13 -0.77 16 14 C -0.13 -1.26 7.12 37.16 0.26 -1.00 16 15 C 0.07 0.91 4.48 -3.82 -0.02 0.89 16 16 N -0.67 -11.04 5.44 -115.06 -0.63 -11.67 16 17 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 18 C 0.44 10.86 7.82 -10.99 -0.09 10.77 16 19 O -0.58 -16.29 15.78 5.55 0.09 -16.20 16 20 N -0.56 -14.84 5.29 -10.96 -0.06 -14.90 16 21 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 22 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -25.20 13.05 55.50 0.72 -24.48 16 25 Si 0.93 21.62 29.55 -169.99 -5.02 16.60 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 C 0.11 1.24 6.01 -2.39 -0.01 1.23 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.42 7.94 -51.93 -0.41 0.01 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.88 8.05 -51.93 -0.42 0.47 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.40 6.71 -51.93 -0.35 0.05 16 36 H 0.08 0.40 7.84 -51.93 -0.41 -0.01 16 37 H 0.07 0.39 6.85 -51.93 -0.36 0.04 16 38 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 0.32 6.72 -51.93 -0.35 -0.03 16 40 H 0.06 0.56 6.90 -51.93 -0.36 0.20 16 41 H 0.05 0.41 6.70 -51.93 -0.35 0.06 16 42 H 0.08 0.95 7.66 -51.93 -0.40 0.55 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.35 6.26 6.36 -39.29 -0.25 6.01 16 46 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 49 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.09 1.28 5.75 -51.93 -0.30 0.98 16 51 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 LS Contribution 406.32 15.07 6.12 6.12 Total: -1.00 -34.66 406.32 -7.72 -42.37 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -8.30 Total: 11.85 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -0.22 Total: 8.15 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.52 Total: -58.05 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.18 Total: -24.88 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.66 -7.72 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182208589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.129 kcal (2) G-P(sol) polarization free energy of solvation -34.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds