Wall clock time and date at job start Wed Apr 1 2020 02:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.46935 * 2 1 4 4 H 1.08996 * 109.47469 * 54.99584 * 3 2 1 5 5 F 1.39903 * 109.47029 * 294.99488 * 3 2 1 6 6 C 1.50701 * 109.46860 * 175.00028 * 3 2 1 7 7 O 1.21277 * 120.00249 * 44.99653 * 6 3 2 8 8 N 1.34779 * 119.99912 * 224.99792 * 6 3 2 9 9 C 1.48154 * 127.83620 * 359.97400 * 8 6 3 10 10 C 1.54389 * 104.61546 * 219.60517 * 9 8 6 11 11 H 1.09004 * 110.34207 * 95.00433 * 10 9 8 12 12 C 1.53002 * 110.34408 * 217.26466 * 10 9 8 13 13 C 1.54291 * 104.96120 * 336.13487 * 10 9 8 14 14 C 1.53001 * 110.43033 * 241.08275 * 13 10 9 15 15 C 1.53000 * 110.34093 * 118.87189 * 13 10 9 16 16 N 1.46901 * 109.46855 * 183.00592 * 15 13 10 17 17 C 1.46898 * 111.00189 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46850 * 90.00463 * 25 23 21 27 27 H 1.48504 * 109.47159 * 210.00116 * 25 23 21 28 28 H 1.48497 * 109.47216 * 330.00562 * 25 23 21 29 29 C 1.48145 * 127.83812 * 179.97438 * 8 6 3 30 30 H 1.08998 * 109.47476 * 300.00356 * 1 2 3 31 31 H 1.09006 * 109.47085 * 60.00204 * 1 2 3 32 32 H 1.09005 * 109.47406 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46740 * 239.99568 * 2 1 3 34 34 H 1.09001 * 109.46417 * 119.99998 * 2 1 3 35 35 H 1.08996 * 110.40460 * 338.38973 * 9 8 6 36 36 H 1.08999 * 110.40377 * 100.70516 * 9 8 6 37 37 H 1.08995 * 109.47391 * 175.53881 * 12 10 9 38 38 H 1.09005 * 109.46417 * 295.53695 * 12 10 9 39 39 H 1.08996 * 109.47011 * 55.53382 * 12 10 9 40 40 H 1.09002 * 109.47445 * 298.46556 * 14 13 10 41 41 H 1.09002 * 109.47163 * 58.46564 * 14 13 10 42 42 H 1.09001 * 109.47205 * 178.46473 * 14 13 10 43 43 H 1.08998 * 109.47488 * 63.00794 * 15 13 10 44 44 H 1.08993 * 109.47041 * 303.00422 * 15 13 10 45 45 H 1.00907 * 110.99760 * 56.04664 * 16 15 13 46 46 H 1.09000 * 109.46741 * 60.00112 * 17 16 15 47 47 H 1.09002 * 109.46898 * 300.00102 * 17 16 15 48 48 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 49 49 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 50 50 H 1.08993 * 110.41008 * 21.61383 * 29 8 6 51 51 H 1.09000 * 110.50361 * 259.22464 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8417 5 9 1.6699 2.0679 -1.1955 6 6 3.5419 1.4442 0.1238 7 8 4.2064 0.6810 -0.5445 8 7 4.1467 2.2940 0.9774 9 6 3.5111 3.2917 1.8694 10 6 4.4380 4.5244 1.7981 11 1 4.0735 5.2299 1.0514 12 6 4.5318 5.1992 3.1681 13 6 5.8138 3.9646 1.3806 14 6 6.8581 4.2534 2.4609 15 6 6.2508 4.5690 0.0447 16 7 7.5267 3.9703 -0.3695 17 6 7.9780 4.5275 -1.6516 18 6 9.2863 3.8905 -2.0435 19 8 9.7927 3.0542 -1.3256 20 7 9.8931 4.2493 -3.1922 21 6 11.0837 3.6701 -3.5485 22 1 11.5350 2.9262 -2.9089 23 6 11.7064 4.0359 -4.7356 24 7 11.1545 4.9373 -5.5165 25 14 13.3281 3.2463 -5.2213 26 1 13.0634 2.0266 -6.0258 27 1 14.1249 4.2069 -6.0262 28 1 14.0853 2.8779 -3.9981 29 6 5.5977 2.4424 1.2366 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 2.5143 3.5443 1.5079 36 1 3.4595 2.9112 2.8895 37 1 5.2495 6.0182 3.1213 38 1 3.5533 5.5891 3.4487 39 1 4.8593 4.4711 3.9101 40 1 6.9623 5.3311 2.5868 41 1 6.5396 3.8068 3.4028 42 1 7.8164 3.8281 2.1629 43 1 6.3741 5.6462 0.1562 44 1 5.4921 4.3665 -0.7111 45 1 7.4557 2.9649 -0.4175 46 1 8.1132 5.6045 -1.5522 47 1 7.2311 4.3243 -2.4191 48 1 9.4879 4.9178 -3.7665 49 1 11.5895 5.1929 -6.3449 50 1 6.1753 2.0542 0.3977 51 1 5.8754 1.9300 2.1577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182208589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:15 Heat of formation + Delta-G solvation = -147.471427 kcal Electronic energy + Delta-G solvation = -31047.653860 eV Core-core repulsion = 26702.099066 eV Total energy + Delta-G solvation = -4345.554794 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.03023 -41.58922 -40.21572 -39.58808 -36.72673 -35.88850 -35.04467 -34.51224 -33.31459 -31.98494 -29.56243 -28.96296 -27.47879 -26.66681 -26.64273 -25.25536 -23.11158 -22.43065 -21.23286 -20.65009 -19.99937 -19.56531 -18.85127 -17.95465 -17.66643 -17.46628 -17.00277 -16.60610 -16.46997 -16.32745 -16.00143 -15.74611 -15.39273 -15.32498 -15.19472 -14.75379 -14.63961 -14.47632 -14.12508 -14.01314 -13.61712 -13.49295 -13.45387 -13.32244 -13.11930 -12.99745 -12.93861 -12.91012 -12.57655 -12.47529 -12.45355 -12.26462 -12.14047 -12.08143 -11.93529 -11.57894 -11.54516 -11.40705 -11.27799 -10.94431 -10.39682 -10.06094 -9.94230 -9.40369 -8.50261 -5.99514 1.18858 1.35235 1.38658 1.52182 1.62612 1.99673 2.26181 2.83851 3.06940 3.16189 3.38405 3.41004 3.49204 3.56403 3.60703 3.77470 3.82334 4.12429 4.22892 4.25291 4.27910 4.34187 4.39615 4.42390 4.44627 4.50652 4.60788 4.63545 4.68257 4.71065 4.78012 4.81593 4.83946 4.96424 4.99538 5.08253 5.10676 5.17271 5.28977 5.31074 5.37041 5.41215 5.48493 5.69852 5.81945 6.03709 6.24696 6.30435 6.55396 6.80161 7.08042 7.50648 8.05927 8.67351 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.002426 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.091330 B =11539.344745 C =12997.327875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.089 3.911 4 H 0.144 0.856 5 F -0.204 7.204 6 C 0.499 3.501 7 O -0.577 6.577 8 N -0.614 5.614 9 C 0.095 3.905 10 C -0.091 4.091 11 H 0.086 0.914 12 C -0.138 4.138 13 C -0.059 4.059 14 C -0.125 4.125 15 C 0.073 3.927 16 N -0.673 5.673 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.995 3.005 26 H -0.272 1.272 27 H -0.267 1.267 28 H -0.272 1.272 29 C 0.105 3.895 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.041 0.959 43 H 0.090 0.910 44 H 0.017 0.983 45 H 0.336 0.664 46 H 0.110 0.890 47 H 0.053 0.947 48 H 0.396 0.604 49 H 0.278 0.722 50 H 0.046 0.954 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.505 1.050 19.499 32.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.051 3.949 4 H 0.161 0.839 5 F -0.185 7.185 6 C 0.286 3.714 7 O -0.456 6.456 8 N -0.346 5.346 9 C -0.026 4.026 10 C -0.111 4.111 11 H 0.104 0.896 12 C -0.196 4.196 13 C -0.061 4.061 14 C -0.182 4.182 15 C -0.055 4.055 16 N -0.305 5.305 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.508 6.508 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.192 1.192 28 H -0.197 1.197 29 C -0.018 4.018 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.035 0.965 45 H 0.155 0.845 46 H 0.128 0.872 47 H 0.070 0.930 48 H 0.230 0.770 49 H 0.088 0.912 50 H 0.065 0.935 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.444 0.559 19.707 31.404 hybrid contribution 0.513 -0.595 -2.025 2.172 sum -23.931 -0.036 17.682 29.755 Atomic orbital electron populations 1.21761 0.91989 1.03547 1.03172 1.22024 0.98950 0.92639 1.04384 1.21874 0.89297 0.97593 0.86179 0.83886 1.92865 1.91815 1.84199 1.49579 1.21356 0.91548 0.79689 0.78806 1.90759 1.67540 1.41558 1.45696 1.49179 1.08826 1.36628 1.40004 1.23013 0.97781 0.86879 0.94939 1.22162 0.92135 0.96508 1.00257 0.89596 1.21879 1.02992 1.00786 0.93912 1.21502 0.96799 0.92528 0.95229 1.21784 0.97171 1.02514 0.96761 1.22123 0.88058 1.00067 0.95279 1.60241 1.30583 1.10647 1.29067 1.21532 0.92874 1.00787 0.91637 1.20824 0.88675 0.85753 0.82308 1.90481 1.68621 1.37698 1.54034 1.41936 1.20995 1.38233 1.19821 1.19677 0.99168 1.21887 1.05747 0.90363 1.26093 1.03018 0.97039 0.95231 1.69678 1.41256 1.31749 1.13439 0.84901 0.76986 0.78039 0.78238 1.19732 1.19195 1.19660 1.22590 0.80883 0.97086 1.01246 0.90050 0.92716 0.90809 0.92161 0.88695 0.87859 0.87496 0.91789 0.90757 0.91241 0.91086 0.90515 0.93980 0.89163 0.96524 0.84481 0.87210 0.92955 0.77010 0.91212 0.93515 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.83 71.98 0.71 -0.76 16 2 C -0.14 -2.19 5.41 30.59 0.17 -2.02 16 3 C 0.09 1.52 3.49 29.85 0.10 1.63 16 4 H 0.14 1.12 6.35 -2.39 -0.02 1.10 16 5 F -0.20 -4.63 16.75 44.97 0.75 -3.87 16 6 C 0.50 12.56 7.25 87.66 0.64 13.19 16 7 O -0.58 -21.08 16.87 -3.02 -0.05 -21.13 16 8 N -0.61 -12.15 3.32 -807.89 -2.68 -14.83 16 9 C 0.09 0.90 6.24 86.53 0.54 1.44 16 10 C -0.09 -1.00 3.31 -9.88 -0.03 -1.03 16 11 H 0.09 0.97 7.71 -2.39 -0.02 0.95 16 12 C -0.14 -0.90 7.95 71.98 0.57 -0.33 16 13 C -0.06 -1.10 0.82 -51.26 -0.04 -1.14 16 14 C -0.12 -2.22 7.12 71.98 0.51 -1.71 16 15 C 0.07 1.81 4.48 86.30 0.39 2.20 16 16 N -0.67 -22.97 5.44 -517.95 -2.82 -25.79 16 17 C 0.06 2.42 6.17 85.56 0.53 2.95 16 18 C 0.44 22.28 7.82 87.66 0.69 22.96 16 19 O -0.62 -36.51 15.78 -3.05 -0.05 -36.56 16 20 N -0.57 -31.12 5.29 -306.99 -1.62 -32.74 16 21 C -0.34 -19.92 9.68 84.04 0.81 -19.10 16 22 H 0.08 4.95 7.16 -2.92 -0.02 4.92 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 24 N -0.92 -51.39 13.05 21.66 0.28 -51.11 16 25 Si 1.00 44.49 29.55 68.60 2.03 46.52 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 29 C 0.10 2.40 6.01 86.55 0.52 2.92 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.65 7.94 -2.38 -0.02 0.63 16 32 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 1.27 8.05 -2.39 -0.02 1.25 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.10 0.54 6.71 -2.39 -0.02 0.52 16 36 H 0.11 0.52 7.84 -2.39 -0.02 0.50 16 37 H 0.06 0.50 6.85 -2.39 -0.02 0.49 16 38 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 39 H 0.07 0.39 6.72 -2.39 -0.02 0.37 16 40 H 0.07 1.13 6.90 -2.39 -0.02 1.12 16 41 H 0.08 0.99 6.70 -2.39 -0.02 0.98 16 42 H 0.04 1.05 7.66 -2.39 -0.02 1.03 16 43 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.34 12.95 6.36 -89.69 -0.57 12.37 16 46 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.40 20.44 7.90 -92.70 -0.73 19.71 16 49 H 0.28 14.49 8.31 -92.71 -0.77 13.71 16 50 H 0.05 1.48 5.75 -2.39 -0.01 1.46 16 51 H 0.09 1.82 7.85 -2.39 -0.02 1.80 16 Total: -1.00 -80.55 406.32 2.06 -78.50 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: -0.35 Total: 40.14 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 6.56 Total: 20.88 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -6.84 Total: -124.47 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -0.10 Total: -57.69 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.75 Total: -3.87 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -80.55 2.06 -78.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182208589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.975 kcal (2) G-P(sol) polarization free energy of solvation -80.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds