Wall clock time and date at job start Wed Apr 1 2020 03:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.30936 * 2 1 4 4 C 1.54389 * 110.34471 * 237.82623 * 2 1 3 5 5 N 1.48142 * 104.62269 * 217.15947 * 4 2 1 6 6 C 1.34774 * 127.83894 * 219.58668 * 5 4 2 7 7 O 1.21281 * 120.00138 * 185.47866 * 6 5 4 8 8 C 1.50702 * 120.00396 * 5.20603 * 6 5 4 9 9 C 1.50702 * 115.54909 * 270.35998 * 8 6 5 10 10 C 1.38676 * 120.41376 * 330.47398 * 9 8 6 11 11 C 1.38626 * 118.41528 * 180.02562 * 10 9 8 12 12 C 1.38226 * 119.16429 * 359.97438 * 11 10 9 13 13 N 1.31853 * 120.76377 * 359.97438 * 12 11 10 14 14 C 1.31889 * 121.72648 * 359.71054 * 13 12 11 15 15 C 1.52999 * 117.50233 * 124.64386 * 8 6 5 16 16 C 1.52998 * 60.00176 * 252.51638 * 15 8 6 17 17 C 1.48145 * 104.32209 * 39.84496 * 5 4 2 18 18 C 1.54292 * 110.43349 * 122.23936 * 2 1 3 19 19 C 1.52998 * 110.33959 * 0.04623 * 18 2 1 20 20 C 1.52994 * 110.34264 * 237.78610 * 18 2 1 21 21 N 1.46500 * 109.47365 * 179.97438 * 20 18 2 22 22 C 1.36932 * 120.00355 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00065 * 359.97438 * 22 21 20 24 24 C 1.38816 * 120.00076 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00031 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99841 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47167 * 90.00003 * 26 24 22 28 28 H 1.48502 * 109.46993 * 209.99855 * 26 24 22 29 29 H 1.48498 * 109.47292 * 329.99825 * 26 24 22 30 30 H 1.08997 * 109.47342 * 180.71756 * 1 2 3 31 31 H 1.09004 * 109.46902 * 300.72027 * 1 2 3 32 32 H 1.09002 * 109.46730 * 60.71764 * 1 2 3 33 33 H 1.09009 * 110.40663 * 98.37177 * 4 2 1 34 34 H 1.09005 * 110.50815 * 335.99453 * 4 2 1 35 35 H 1.07995 * 120.79179 * 359.97438 * 10 9 8 36 36 H 1.08004 * 120.41905 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.61886 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.61829 * 180.30765 * 14 13 12 39 39 H 1.08999 * 117.49825 * 0.02562 * 15 8 6 40 40 H 1.09006 * 117.49578 * 145.02560 * 15 8 6 41 41 H 1.09004 * 117.49363 * 252.51587 * 16 15 8 42 42 H 1.08998 * 117.50435 * 107.49206 * 16 15 8 43 43 H 1.08992 * 110.40639 * 78.94271 * 17 5 4 44 44 H 1.09007 * 110.40413 * 201.37454 * 17 5 4 45 45 H 1.08997 * 109.47533 * 59.99843 * 19 18 2 46 46 H 1.08998 * 109.47161 * 180.02562 * 19 18 2 47 47 H 1.09007 * 109.46916 * 299.99536 * 19 18 2 48 48 H 1.09002 * 109.47192 * 300.00039 * 20 18 2 49 49 H 1.08996 * 109.47270 * 59.99757 * 20 18 2 50 50 H 0.97007 * 119.99362 * 359.97438 * 21 20 18 51 51 H 0.97005 * 119.99958 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2679 -1.4789 -0.7249 6 6 4.4435 -1.6617 -1.3579 7 8 5.3032 -2.3524 -0.8531 8 6 4.6878 -1.0128 -2.6960 9 6 4.2788 -1.8261 -3.8970 10 6 4.3034 -3.2117 -3.8481 11 6 3.9192 -3.9187 -4.9770 12 6 3.5266 -3.2239 -6.1056 13 7 3.5146 -1.9054 -6.1158 14 6 3.8676 -1.2004 -5.0585 15 6 5.9232 -0.1208 -2.8337 16 6 4.5285 0.5063 -2.7840 17 6 2.8813 -1.9461 0.6268 18 6 2.0686 -0.7713 1.2229 19 6 0.9100 -1.3053 2.0674 20 6 2.9709 0.1318 2.0661 21 7 3.4707 -0.6183 3.2210 22 6 4.3026 -0.0116 4.1237 23 1 4.5907 1.0198 3.9841 24 6 4.7758 -0.7224 5.2182 25 7 5.5758 -0.1394 6.0856 26 14 4.2770 -2.5062 5.4600 27 1 5.2550 -3.3907 4.7768 28 1 4.2539 -2.8215 6.9110 29 1 2.9256 -2.7248 4.8844 30 1 -0.3634 -1.0275 0.0129 31 1 -0.3633 0.5250 0.8835 32 1 -0.3633 0.5027 -0.8964 33 1 2.3383 -0.0775 -2.0214 34 1 1.3250 -1.4857 -1.5817 35 1 4.6153 -3.7278 -2.9521 36 1 3.9258 -4.9987 -4.9744 37 1 3.2262 -3.7672 -6.9893 38 1 3.8403 -0.1217 -5.1028 39 1 6.5596 -0.0036 -1.9565 40 1 6.4405 -0.1222 -3.7931 41 1 4.1283 0.9175 -3.7108 42 1 4.2471 1.0365 -1.8741 43 1 2.2641 -2.8418 0.5572 44 1 3.7683 -2.1406 1.2298 45 1 0.2999 -1.9772 1.4639 46 1 1.3059 -1.8466 2.9266 47 1 0.2986 -0.4719 2.4138 48 1 3.8118 0.4717 1.4615 49 1 2.4007 0.9938 2.4124 50 1 3.2117 -1.5447 3.3465 51 1 5.9061 -0.6359 6.8506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182345562.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:21 Heat of formation + Delta-G solvation = 52.224744 kcal Electronic energy + Delta-G solvation = -31253.166995 eV Core-core repulsion = 27347.040902 eV Total energy + Delta-G solvation = -3906.126094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.15828 -40.12617 -38.68153 -36.75880 -34.93800 -33.30575 -32.73363 -31.66367 -31.16161 -30.04430 -27.48950 -26.43164 -25.80140 -24.87085 -23.96469 -23.17293 -22.62240 -22.10041 -20.92936 -19.10706 -18.59100 -17.87139 -17.57759 -16.92456 -16.31868 -16.22480 -15.51598 -15.40824 -14.91714 -14.76882 -14.57603 -14.24584 -13.97318 -13.87733 -13.76729 -13.47949 -13.21111 -13.09643 -12.75340 -12.66058 -12.37858 -12.10311 -12.08992 -11.75883 -11.72415 -11.57320 -11.46754 -11.34621 -11.29121 -10.98391 -10.88308 -10.56660 -10.36320 -10.24499 -10.07725 -10.01384 -9.98936 -9.55775 -9.54010 -9.14983 -8.89153 -8.69484 -7.21736 -5.75413 -3.10594 0.72426 0.95852 2.53402 2.79136 3.24775 3.36800 3.41513 3.46567 3.65160 3.98333 4.21351 4.25033 4.44215 4.48156 4.55996 4.59405 4.60526 4.68103 4.71006 4.80573 4.91514 5.11581 5.15906 5.23439 5.25857 5.35946 5.37650 5.38110 5.45869 5.48413 5.57395 5.61061 5.62243 5.69130 5.74685 5.80190 5.82025 5.84111 5.91534 5.95174 5.99257 6.09584 6.18778 6.26370 6.34103 6.37113 6.51942 6.63251 6.72422 7.55172 7.62188 7.99973 8.14034 8.43421 9.22142 9.94592 10.13963 11.43195 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.003219 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.554764 B = 8697.328893 C = 9257.770990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.084 0.916 4 C 0.104 3.896 5 N -0.611 5.611 6 C 0.573 3.427 7 O -0.526 6.526 8 C -0.115 4.115 9 C -0.085 4.085 10 C -0.065 4.065 11 C -0.166 4.166 12 C 0.092 3.908 13 N -0.480 5.480 14 C 0.101 3.899 15 C -0.131 4.131 16 C -0.161 4.161 17 C 0.111 3.889 18 C -0.080 4.080 19 C -0.136 4.136 20 C 0.175 3.825 21 N -0.753 5.753 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.881 3.119 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.025 0.975 49 H 0.029 0.971 50 H 0.361 0.639 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.953 -2.476 -24.745 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.103 0.897 4 C -0.019 4.019 5 N -0.344 5.344 6 C 0.360 3.640 7 O -0.402 6.402 8 C -0.119 4.119 9 C -0.087 4.087 10 C -0.091 4.091 11 C -0.186 4.186 12 C -0.065 4.065 13 N -0.188 5.188 14 C -0.056 4.056 15 C -0.168 4.168 16 C -0.198 4.198 17 C -0.011 4.011 18 C -0.081 4.081 19 C -0.193 4.193 20 C 0.048 3.952 21 N -0.399 5.399 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.190 4.190 25 N -0.582 5.582 26 Si 0.711 3.289 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.085 0.915 44 H 0.113 0.887 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.043 0.957 49 H 0.047 0.953 50 H 0.194 0.806 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.492 -2.272 -25.174 27.000 hybrid contribution 0.009 -1.817 1.168 2.160 sum -9.483 -4.088 -24.006 26.133 Atomic orbital electron populations 1.21891 0.94064 1.02142 1.01859 1.22125 0.96134 0.99799 0.93565 0.89715 1.22565 0.86639 0.95635 0.97050 1.48799 1.12425 1.55363 1.17806 1.18804 0.80365 0.80510 0.84338 1.90760 1.43714 1.38776 1.66942 1.19916 1.07448 0.92752 0.91798 1.19719 1.00740 0.93870 0.94406 1.21579 0.95017 0.93463 0.99008 1.22163 1.00716 1.01651 0.94054 1.22791 0.95764 0.90178 0.97765 1.67739 1.14051 1.08405 1.28641 1.22630 0.94773 1.00413 0.87768 1.23136 0.90463 0.98537 1.04661 1.23296 1.00345 0.91504 1.04626 1.22650 1.00136 0.95912 0.82416 1.21844 0.95968 0.95463 0.94838 1.21898 0.96841 1.01115 0.99487 1.20607 0.93928 0.92827 0.87868 1.42741 1.58589 1.11775 1.26804 1.19021 1.19628 0.97538 1.00989 0.89323 1.24648 0.99464 0.97582 0.97323 1.69696 1.37341 1.36266 1.14930 0.86611 0.78285 0.86854 0.77164 1.20950 1.21682 1.20340 0.92163 0.91663 0.92882 0.90070 0.91249 0.84572 0.84560 0.82645 0.82579 0.87191 0.87534 0.87347 0.87159 0.91503 0.88743 0.92817 0.92027 0.91700 0.95724 0.95295 0.80584 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 7.93 37.16 0.29 -0.92 16 2 C -0.10 -1.03 3.30 -89.22 -0.29 -1.32 16 3 H 0.08 0.91 7.71 -51.93 -0.40 0.51 16 4 C 0.10 1.06 6.39 -2.41 -0.02 1.05 16 5 N -0.61 -8.36 3.31 -169.05 -0.56 -8.92 16 6 C 0.57 8.62 6.01 -10.99 -0.07 8.56 16 7 O -0.53 -10.24 17.12 5.56 0.10 -10.14 16 8 C -0.12 -1.29 1.78 -156.81 -0.28 -1.57 16 9 C -0.08 -0.89 5.50 -104.48 -0.57 -1.47 16 10 C -0.06 -0.70 9.44 -39.28 -0.37 -1.07 16 11 C -0.17 -1.45 10.11 -39.44 -0.40 -1.85 16 12 C 0.09 0.79 11.18 -17.55 -0.20 0.60 16 13 N -0.48 -4.92 10.36 -13.25 -0.14 -5.06 16 14 C 0.10 0.96 10.53 -17.55 -0.18 0.77 16 15 C -0.13 -1.32 9.91 -26.73 -0.26 -1.59 16 16 C -0.16 -1.38 7.73 -26.73 -0.21 -1.58 16 17 C 0.11 1.70 5.91 -2.19 -0.01 1.69 16 18 C -0.08 -1.13 0.74 -152.89 -0.11 -1.25 16 19 C -0.14 -1.81 7.11 37.16 0.26 -1.55 16 20 C 0.17 3.30 4.96 -4.04 -0.02 3.28 16 21 N -0.75 -17.76 4.60 -59.91 -0.28 -18.03 16 22 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 23 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 25 N -0.93 -29.80 13.97 55.49 0.78 -29.02 16 26 Si 0.88 22.49 27.73 -169.99 -4.71 17.77 16 27 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 30 H 0.06 0.50 6.62 -51.93 -0.34 0.16 16 31 H 0.06 0.58 6.99 -51.93 -0.36 0.22 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.70 5.76 -51.92 -0.30 0.40 16 34 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 35 H 0.14 1.66 7.21 -52.49 -0.38 1.28 16 36 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.16 1.12 5.97 -52.49 -0.31 0.81 16 39 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.11 0.65 6.13 -51.93 -0.32 0.33 16 42 H 0.11 1.01 7.99 -51.93 -0.41 0.59 16 43 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 44 H 0.09 1.82 7.01 -51.93 -0.36 1.46 16 45 H 0.05 0.58 6.68 -51.93 -0.35 0.24 16 46 H 0.06 0.98 6.74 -51.93 -0.35 0.63 16 47 H 0.06 0.82 6.89 -51.92 -0.36 0.46 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.36 8.33 3.85 -40.82 -0.16 8.17 16 51 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 396.81 15.07 5.98 5.98 Total: -1.00 -35.25 396.81 -9.30 -44.55 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.77 Total: 8.11 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.69 Total: -5.24 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.20 Total: -61.04 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.10 Total: -10.14 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.25 -9.30 -44.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182345562.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.777 kcal (2) G-P(sol) polarization free energy of solvation -35.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds