Wall clock time and date at job start Wed Apr 1 2020 03:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.30936 * 2 1 4 4 C 1.54389 * 110.34471 * 237.82623 * 2 1 3 5 5 N 1.48142 * 104.62269 * 217.15947 * 4 2 1 6 6 C 1.34774 * 127.83894 * 219.58668 * 5 4 2 7 7 O 1.21281 * 120.00138 * 185.47866 * 6 5 4 8 8 C 1.50702 * 120.00396 * 5.20603 * 6 5 4 9 9 C 1.50702 * 115.54909 * 270.35998 * 8 6 5 10 10 C 1.38676 * 120.41376 * 330.47398 * 9 8 6 11 11 C 1.38626 * 118.41528 * 180.02562 * 10 9 8 12 12 C 1.38226 * 119.16429 * 359.97438 * 11 10 9 13 13 N 1.31853 * 120.76377 * 359.97438 * 12 11 10 14 14 C 1.31889 * 121.72648 * 359.71054 * 13 12 11 15 15 C 1.52999 * 117.50233 * 124.64386 * 8 6 5 16 16 C 1.52998 * 60.00176 * 252.51638 * 15 8 6 17 17 C 1.48145 * 104.32209 * 39.84496 * 5 4 2 18 18 C 1.54292 * 110.43349 * 122.23936 * 2 1 3 19 19 C 1.52998 * 110.33959 * 0.04623 * 18 2 1 20 20 C 1.52994 * 110.34264 * 237.78610 * 18 2 1 21 21 N 1.46500 * 109.47365 * 179.97438 * 20 18 2 22 22 C 1.36932 * 120.00355 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00065 * 359.97438 * 22 21 20 24 24 C 1.38816 * 120.00076 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00031 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99841 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47167 * 90.00003 * 26 24 22 28 28 H 1.48502 * 109.46993 * 209.99855 * 26 24 22 29 29 H 1.48498 * 109.47292 * 329.99825 * 26 24 22 30 30 H 1.08997 * 109.47342 * 180.71756 * 1 2 3 31 31 H 1.09004 * 109.46902 * 300.72027 * 1 2 3 32 32 H 1.09002 * 109.46730 * 60.71764 * 1 2 3 33 33 H 1.09009 * 110.40663 * 98.37177 * 4 2 1 34 34 H 1.09005 * 110.50815 * 335.99453 * 4 2 1 35 35 H 1.07995 * 120.79179 * 359.97438 * 10 9 8 36 36 H 1.08004 * 120.41905 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.61886 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.61829 * 180.30765 * 14 13 12 39 39 H 1.08999 * 117.49825 * 0.02562 * 15 8 6 40 40 H 1.09006 * 117.49578 * 145.02560 * 15 8 6 41 41 H 1.09004 * 117.49363 * 252.51587 * 16 15 8 42 42 H 1.08998 * 117.50435 * 107.49206 * 16 15 8 43 43 H 1.08992 * 110.40639 * 78.94271 * 17 5 4 44 44 H 1.09007 * 110.40413 * 201.37454 * 17 5 4 45 45 H 1.08997 * 109.47533 * 59.99843 * 19 18 2 46 46 H 1.08998 * 109.47161 * 180.02562 * 19 18 2 47 47 H 1.09007 * 109.46916 * 299.99536 * 19 18 2 48 48 H 1.09002 * 109.47192 * 300.00039 * 20 18 2 49 49 H 1.08996 * 109.47270 * 59.99757 * 20 18 2 50 50 H 0.97007 * 119.99362 * 359.97438 * 21 20 18 51 51 H 0.97005 * 119.99958 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2679 -1.4789 -0.7249 6 6 4.4435 -1.6617 -1.3579 7 8 5.3032 -2.3524 -0.8531 8 6 4.6878 -1.0128 -2.6960 9 6 4.2788 -1.8261 -3.8970 10 6 4.3034 -3.2117 -3.8481 11 6 3.9192 -3.9187 -4.9770 12 6 3.5266 -3.2239 -6.1056 13 7 3.5146 -1.9054 -6.1158 14 6 3.8676 -1.2004 -5.0585 15 6 5.9232 -0.1208 -2.8337 16 6 4.5285 0.5063 -2.7840 17 6 2.8813 -1.9461 0.6268 18 6 2.0686 -0.7713 1.2229 19 6 0.9100 -1.3053 2.0674 20 6 2.9709 0.1318 2.0661 21 7 3.4707 -0.6183 3.2210 22 6 4.3026 -0.0116 4.1237 23 1 4.5907 1.0198 3.9841 24 6 4.7758 -0.7224 5.2182 25 7 5.5758 -0.1394 6.0856 26 14 4.2770 -2.5062 5.4600 27 1 5.2550 -3.3907 4.7768 28 1 4.2539 -2.8215 6.9110 29 1 2.9256 -2.7248 4.8844 30 1 -0.3634 -1.0275 0.0129 31 1 -0.3633 0.5250 0.8835 32 1 -0.3633 0.5027 -0.8964 33 1 2.3383 -0.0775 -2.0214 34 1 1.3250 -1.4857 -1.5817 35 1 4.6153 -3.7278 -2.9521 36 1 3.9258 -4.9987 -4.9744 37 1 3.2262 -3.7672 -6.9893 38 1 3.8403 -0.1217 -5.1028 39 1 6.5596 -0.0036 -1.9565 40 1 6.4405 -0.1222 -3.7931 41 1 4.1283 0.9175 -3.7108 42 1 4.2471 1.0365 -1.8741 43 1 2.2641 -2.8418 0.5572 44 1 3.7683 -2.1406 1.2298 45 1 0.2999 -1.9772 1.4639 46 1 1.3059 -1.8466 2.9266 47 1 0.2986 -0.4719 2.4138 48 1 3.8118 0.4717 1.4615 49 1 2.4007 0.9938 2.4124 50 1 3.2117 -1.5447 3.3465 51 1 5.9061 -0.6359 6.8506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182345562.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:18 Heat of formation + Delta-G solvation = 29.303325 kcal Electronic energy + Delta-G solvation = -31254.160943 eV Core-core repulsion = 27347.040902 eV Total energy + Delta-G solvation = -3907.120041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -42.06909 -41.04790 -39.74477 -37.73238 -36.66516 -34.65553 -33.44996 -33.42893 -31.84781 -31.50614 -28.54316 -27.94113 -26.75480 -25.78215 -24.84573 -24.66462 -23.42009 -23.14216 -22.16253 -20.25946 -20.10279 -19.22820 -18.48230 -17.93572 -17.31270 -17.09602 -16.66219 -16.55027 -16.34134 -16.07460 -15.56035 -15.39154 -15.09201 -14.97590 -14.84321 -14.68981 -14.55416 -14.11636 -14.04710 -13.80499 -13.59280 -13.26121 -13.07744 -13.01383 -12.93679 -12.72112 -12.66201 -12.48854 -12.31506 -12.14898 -12.10680 -11.91587 -11.83191 -11.64599 -11.35312 -11.22405 -11.05041 -11.01123 -10.74698 -10.40657 -9.85760 -9.82489 -9.33849 -8.08278 -5.40505 0.04333 0.22681 1.28581 1.34672 1.39916 1.41108 1.76670 2.42041 2.48717 2.90880 3.22620 3.25620 3.26637 3.45945 3.54058 3.59023 3.69890 3.73416 3.80188 3.90610 3.91645 4.00639 4.15997 4.25166 4.28358 4.31742 4.41656 4.53607 4.55542 4.60418 4.64556 4.69168 4.73495 4.82591 4.83007 4.85741 4.87740 4.97681 5.01821 5.07027 5.08263 5.11085 5.17217 5.25650 5.28594 5.35877 5.41892 5.62995 5.67853 5.70006 6.16060 6.47543 6.94766 7.00088 7.02850 7.79236 7.97556 9.13644 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.003219 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.554764 B = 8697.328893 C = 9257.770990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.085 0.915 4 C 0.105 3.895 5 N -0.611 5.611 6 C 0.564 3.436 7 O -0.587 6.587 8 C -0.123 4.123 9 C -0.090 4.090 10 C -0.086 4.086 11 C -0.163 4.163 12 C 0.093 3.907 13 N -0.496 5.496 14 C 0.106 3.894 15 C -0.141 4.141 16 C -0.134 4.134 17 C 0.108 3.892 18 C -0.071 4.071 19 C -0.133 4.133 20 C 0.174 3.826 21 N -0.754 5.754 22 C -0.231 4.231 23 H 0.055 0.945 24 C -0.062 4.062 25 N -0.983 5.983 26 Si 0.947 3.053 27 H -0.288 1.288 28 H -0.289 1.289 29 H -0.245 1.245 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.185 0.815 38 H 0.182 0.818 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.086 0.914 46 H 0.033 0.967 47 H 0.073 0.927 48 H 0.005 0.995 49 H 0.032 0.968 50 H 0.365 0.635 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.418 -2.774 -28.260 31.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.103 0.897 4 C -0.016 4.016 5 N -0.342 5.342 6 C 0.353 3.647 7 O -0.467 6.467 8 C -0.127 4.127 9 C -0.092 4.092 10 C -0.113 4.113 11 C -0.182 4.182 12 C -0.064 4.064 13 N -0.204 5.204 14 C -0.051 4.051 15 C -0.179 4.179 16 C -0.170 4.170 17 C -0.015 4.015 18 C -0.073 4.073 19 C -0.190 4.190 20 C 0.048 3.952 21 N -0.400 5.400 22 C -0.363 4.363 23 H 0.073 0.927 24 C -0.254 4.254 25 N -0.634 5.634 26 Si 0.774 3.226 27 H -0.215 1.215 28 H -0.215 1.215 29 H -0.170 1.170 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.175 0.825 37 H 0.202 0.798 38 H 0.199 0.801 39 H 0.101 0.899 40 H 0.145 0.855 41 H 0.164 0.836 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.052 0.948 47 H 0.092 0.908 48 H 0.023 0.977 49 H 0.050 0.950 50 H 0.199 0.801 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.034 -2.542 -28.740 31.660 hybrid contribution 1.144 -1.661 2.219 2.998 sum -11.889 -4.203 -26.521 29.367 Atomic orbital electron populations 1.21874 0.91561 1.03058 1.02991 1.22116 0.98020 0.99157 0.91459 0.89681 1.22821 0.85377 0.96171 0.97260 1.48930 1.13193 1.54990 1.17125 1.19555 0.79868 0.79781 0.85462 1.90715 1.45691 1.41521 1.68793 1.19772 1.08798 0.94137 0.89967 1.19660 1.01562 0.93521 0.94487 1.21568 0.96435 0.94147 0.99102 1.22378 0.99819 1.02750 0.93273 1.23280 0.94659 0.89960 0.98481 1.67820 1.14557 1.09173 1.28837 1.22916 0.93839 1.01484 0.86853 1.23185 0.91009 0.99110 1.04564 1.23453 0.98354 0.89123 1.06092 1.22578 0.98526 0.97348 0.83045 1.21741 0.95250 0.94592 0.95679 1.21905 0.96570 1.01787 0.98745 1.20754 0.94083 0.93686 0.86724 1.42747 1.57879 1.12174 1.27198 1.19017 1.19419 0.96264 1.01551 0.92711 1.25455 1.00116 1.02414 0.97375 1.69872 1.39353 1.38289 1.15872 0.85537 0.79301 0.80764 0.77025 1.21521 1.21536 1.16967 0.91289 0.91896 0.90522 0.87898 0.89199 0.87082 0.82519 0.79765 0.80138 0.89860 0.85517 0.83571 0.87748 0.89599 0.93574 0.89531 0.94792 0.90760 0.97673 0.94995 0.80097 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.93 71.98 0.57 -1.15 16 2 C -0.09 -1.61 3.30 -9.89 -0.03 -1.64 16 3 H 0.08 1.59 7.71 -2.39 -0.02 1.58 16 4 C 0.11 1.81 6.39 86.54 0.55 2.37 16 5 N -0.61 -16.46 3.31 -807.16 -2.67 -19.13 16 6 C 0.56 17.53 6.01 87.66 0.53 18.05 16 7 O -0.59 -24.62 17.12 -3.03 -0.05 -24.67 16 8 C -0.12 -2.68 1.78 -53.67 -0.10 -2.77 16 9 C -0.09 -1.75 5.50 -19.77 -0.11 -1.86 16 10 C -0.09 -1.83 9.44 22.47 0.21 -1.62 16 11 C -0.16 -2.53 10.11 22.36 0.23 -2.30 16 12 C 0.09 1.32 11.18 84.69 0.95 2.27 16 13 N -0.50 -8.53 10.36 -195.84 -2.03 -10.56 16 14 C 0.11 1.66 10.53 84.67 0.89 2.55 16 15 C -0.14 -2.81 9.91 30.59 0.30 -2.51 16 16 C -0.13 -1.98 7.73 30.59 0.24 -1.74 16 17 C 0.11 3.30 5.91 86.67 0.51 3.82 16 18 C -0.07 -1.94 0.74 -51.13 -0.04 -1.98 16 19 C -0.13 -3.21 7.11 71.98 0.51 -2.70 16 20 C 0.17 6.65 4.96 86.38 0.43 7.08 16 21 N -0.75 -36.44 4.60 -343.46 -1.58 -38.02 16 22 C -0.23 -13.77 10.47 84.04 0.88 -12.89 16 23 H 0.05 3.56 8.06 -2.91 -0.02 3.54 16 24 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 25 N -0.98 -65.23 13.97 21.65 0.30 -64.93 16 26 Si 0.95 47.59 27.73 68.60 1.90 49.49 16 27 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 28 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 29 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 30 H 0.07 0.78 6.62 -2.39 -0.02 0.76 16 31 H 0.06 0.86 6.99 -2.38 -0.02 0.84 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 1.36 5.76 -2.38 -0.01 1.35 16 34 H 0.09 1.27 7.87 -2.38 -0.02 1.25 16 35 H 0.11 2.89 7.21 -2.91 -0.02 2.87 16 36 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.18 1.76 5.97 -2.91 -0.02 1.74 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.13 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.15 1.05 6.13 -2.38 -0.01 1.04 16 42 H 0.10 1.71 7.99 -2.39 -0.02 1.69 16 43 H 0.09 2.27 7.84 -2.39 -0.02 2.25 16 44 H 0.05 1.87 7.01 -2.38 -0.02 1.85 16 45 H 0.09 1.54 6.68 -2.39 -0.02 1.53 16 46 H 0.03 1.01 6.74 -2.39 -0.02 0.99 16 47 H 0.07 1.67 6.89 -2.38 -0.02 1.65 16 48 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.36 17.00 3.85 -92.70 -0.36 16.64 16 51 H 0.26 16.29 8.31 -92.70 -0.77 15.51 16 Total: -1.00 -83.38 396.81 3.39 -79.99 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.53 Total: 28.22 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 6.99 Total: -0.39 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -5.98 Total: -132.65 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.90 Total: 49.49 kcal Total: -83.38 3.39 -79.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182345562.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.293 kcal (2) G-P(sol) polarization free energy of solvation -83.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds