Wall clock time and date at job start Wed Apr 1 2020 03:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.38931 * 2 1 4 4 C 1.54393 * 110.34451 * 237.77152 * 2 1 3 5 5 N 1.48145 * 104.61767 * 217.26102 * 4 2 1 6 6 C 1.34777 * 127.83783 * 219.57965 * 5 4 2 7 7 O 1.21283 * 119.99750 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99928 * 0.30631 * 6 5 4 9 9 H 1.08995 * 110.26430 * 60.32024 * 8 6 5 10 10 C 1.54334 * 110.29387 * 182.48099 * 8 6 5 11 11 C 1.54367 * 102.39048 * 145.27646 * 10 8 6 12 12 C 1.51226 * 105.12056 * 333.71193 * 11 10 8 13 13 C 1.38741 * 130.69735 * 197.15548 * 12 11 10 14 14 C 1.38577 * 118.56048 * 179.97438 * 13 12 11 15 15 C 1.38231 * 118.98622 * 359.97438 * 14 13 12 16 16 N 1.31689 * 120.80223 * 0.02562 * 15 14 13 17 17 C 1.32291 * 122.03262 * 0.02562 * 16 15 14 18 18 C 1.48150 * 104.32186 * 39.84627 * 5 4 2 19 19 C 1.54283 * 110.34553 * 122.23057 * 2 1 3 20 20 C 1.52996 * 110.34129 * 359.89733 * 19 2 1 21 21 C 1.52997 * 110.34531 * 237.73989 * 19 2 1 22 22 N 1.46503 * 109.47164 * 180.02562 * 21 19 2 23 23 C 1.36937 * 119.99952 * 180.02562 * 22 21 19 24 24 H 1.07998 * 120.00279 * 0.02562 * 23 22 21 25 25 C 1.38811 * 119.99568 * 179.97438 * 23 22 21 26 26 N 1.31627 * 119.99570 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 120.00431 * 359.97438 * 25 23 22 28 28 H 1.48493 * 109.46886 * 90.00022 * 27 25 23 29 29 H 1.48497 * 109.47066 * 209.99948 * 27 25 23 30 30 H 1.48497 * 109.46832 * 330.00053 * 27 25 23 31 31 H 1.08993 * 109.46935 * 180.77853 * 1 2 3 32 32 H 1.08997 * 109.46932 * 300.77745 * 1 2 3 33 33 H 1.09004 * 109.47108 * 60.77554 * 1 2 3 34 34 H 1.08999 * 110.40410 * 98.47338 * 4 2 1 35 35 H 1.08997 * 110.50101 * 336.09842 * 4 2 1 36 36 H 1.08997 * 110.82585 * 263.50173 * 10 8 6 37 37 H 1.08999 * 110.82631 * 27.05242 * 10 8 6 38 38 H 1.08993 * 110.31735 * 214.79894 * 11 10 8 39 39 H 1.09002 * 110.31420 * 92.61801 * 11 10 8 40 40 H 1.07996 * 120.72204 * 359.93601 * 13 12 11 41 41 H 1.07996 * 120.50768 * 180.02562 * 14 13 12 42 42 H 1.08000 * 119.59577 * 179.97438 * 15 14 13 43 43 H 1.08991 * 110.41004 * 78.93917 * 18 5 4 44 44 H 1.09001 * 110.40144 * 201.36830 * 18 5 4 45 45 H 1.08999 * 109.47655 * 59.99844 * 20 19 2 46 46 H 1.09003 * 109.47430 * 179.97438 * 20 19 2 47 47 H 1.09004 * 109.47022 * 299.99817 * 20 19 2 48 48 H 1.08997 * 109.47695 * 299.99940 * 21 19 2 49 49 H 1.09001 * 109.47031 * 60.00261 * 21 19 2 50 50 H 0.96999 * 119.99969 * 359.97438 * 22 21 19 51 51 H 0.96999 * 119.99512 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 3.2664 -1.4816 -0.7227 6 6 4.4424 -1.6663 -1.3547 7 8 5.3365 -2.2751 -0.8061 8 6 4.6485 -1.1110 -2.7404 9 1 4.5366 -0.0269 -2.7332 10 6 6.0430 -1.5038 -3.2725 11 6 5.7784 -1.7022 -4.7803 12 6 4.3154 -2.0722 -4.8787 13 6 3.5986 -2.6611 -5.9104 14 6 2.2442 -2.8913 -5.7289 15 6 1.6576 -2.5281 -4.5311 16 7 2.3692 -1.9710 -3.5733 17 6 3.6637 -1.7339 -3.7082 18 6 2.8779 -1.9478 0.6288 19 6 2.0664 -0.7715 1.2237 20 6 0.9062 -1.3013 2.0688 21 6 2.9692 0.1306 2.0673 22 7 3.4678 -0.6202 3.2223 23 6 4.3000 -0.0144 4.1254 24 1 4.5885 1.0170 3.9865 25 6 4.7720 -0.7258 5.2199 26 7 5.5723 -0.1436 6.0878 27 14 4.2714 -2.5092 5.4614 28 1 5.2487 -3.3944 4.7785 29 1 4.2474 -2.8245 6.9123 30 1 2.9201 -2.7263 4.8852 31 1 -0.3633 -1.0275 0.0140 32 1 -0.3633 0.5258 0.8829 33 1 -0.3633 0.5018 -0.8969 34 1 2.3400 -0.0793 -2.0206 35 1 1.3243 -1.4859 -1.5813 36 1 6.7611 -0.7005 -3.1076 37 1 6.3857 -2.4313 -2.8140 38 1 6.3996 -2.5082 -5.1707 39 1 5.9720 -0.7772 -5.3235 40 1 4.0854 -2.9336 -6.8351 41 1 1.6561 -3.3482 -6.5110 42 1 0.6027 -2.7026 -4.3792 43 1 2.2595 -2.8426 0.5590 44 1 3.7640 -2.1433 1.2326 45 1 0.2942 -1.9721 1.4659 46 1 1.3006 -1.8436 2.9281 47 1 0.2972 -0.4658 2.4143 48 1 3.8112 0.4690 1.4635 49 1 2.3999 0.9935 2.4128 50 1 3.2079 -1.5463 3.3476 51 1 5.9018 -0.6406 6.8528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182402431.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:01 Heat of formation + Delta-G solvation = 26.113264 kcal Electronic energy + Delta-G solvation = -31379.536969 eV Core-core repulsion = 27472.278597 eV Total energy + Delta-G solvation = -3907.258372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.34447 -39.94296 -38.36081 -36.14199 -34.83915 -33.38741 -32.81330 -31.53650 -29.95719 -29.63976 -28.86945 -26.88451 -25.69243 -25.57850 -23.80208 -23.05216 -22.36034 -21.52644 -20.86084 -19.00425 -18.44229 -17.76731 -17.11023 -16.89016 -16.70707 -15.80308 -15.58241 -15.11100 -14.73195 -14.54615 -14.49616 -13.93451 -13.85726 -13.72903 -13.67358 -13.40578 -13.21564 -12.94155 -12.66684 -12.53154 -12.19191 -12.06781 -11.96428 -11.87313 -11.73973 -11.56446 -11.41205 -11.34662 -11.26729 -11.13840 -10.81162 -10.42289 -10.23300 -10.15029 -10.10302 -9.91291 -9.78790 -9.50312 -9.42776 -9.00410 -8.81214 -8.40951 -7.13378 -5.68775 -3.03128 0.73655 0.94413 2.73101 3.09661 3.43164 3.47428 3.47788 3.52052 3.64824 4.04612 4.37325 4.48901 4.57687 4.62195 4.67162 4.71518 4.81875 4.85319 4.90627 4.99192 5.11758 5.20707 5.26647 5.36137 5.43328 5.50297 5.51588 5.52246 5.57899 5.64202 5.67249 5.72219 5.78572 5.79507 5.87003 5.90396 5.96015 6.00491 6.04690 6.07665 6.14896 6.26891 6.34789 6.38010 6.41726 6.54397 6.64042 6.75462 6.86168 7.65702 7.80340 8.07606 8.33984 8.50429 9.29705 10.02294 10.22297 11.50025 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.003310 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.311232 B = 8456.181790 C = 9527.333612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 H 0.080 0.920 4 C 0.127 3.873 5 N -0.607 5.607 6 C 0.543 3.457 7 O -0.536 6.536 8 C -0.056 4.056 9 H 0.119 0.881 10 C -0.104 4.104 11 C -0.080 4.080 12 C -0.141 4.141 13 C -0.065 4.065 14 C -0.172 4.172 15 C 0.102 3.898 16 N -0.467 5.467 17 C 0.127 3.873 18 C 0.113 3.887 19 C -0.079 4.079 20 C -0.135 4.135 21 C 0.175 3.825 22 N -0.753 5.753 23 C -0.239 4.239 24 H 0.089 0.911 25 C 0.004 3.996 26 N -0.936 5.936 27 Si 0.881 3.119 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.158 0.842 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.025 0.975 49 H 0.028 0.972 50 H 0.361 0.639 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.065 -3.160 -28.743 30.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.098 0.902 4 C 0.004 3.996 5 N -0.339 5.339 6 C 0.330 3.670 7 O -0.412 6.412 8 C -0.078 4.078 9 H 0.136 0.864 10 C -0.142 4.142 11 C -0.117 4.117 12 C -0.143 4.143 13 C -0.091 4.091 14 C -0.192 4.192 15 C -0.056 4.056 16 N -0.175 5.175 17 C -0.011 4.011 18 C -0.010 4.010 19 C -0.081 4.081 20 C -0.192 4.192 21 C 0.048 3.952 22 N -0.399 5.399 23 C -0.369 4.369 24 H 0.107 0.893 25 C -0.191 4.191 26 N -0.584 5.584 27 Si 0.711 3.289 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.175 0.825 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.043 0.957 49 H 0.046 0.954 50 H 0.194 0.806 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.753 -3.106 -27.609 29.445 hybrid contribution -0.047 -1.457 -0.568 1.564 sum -9.799 -4.563 -28.177 30.179 Atomic orbital electron populations 1.21854 0.94290 1.01989 1.01490 1.22231 0.96039 0.99760 0.94326 0.90205 1.22479 0.86909 0.95210 0.94966 1.48708 1.12731 1.55016 1.17397 1.19635 0.80809 0.80116 0.86446 1.90739 1.41318 1.42121 1.67068 1.20866 0.94296 1.01588 0.91038 0.86360 1.22314 0.93969 1.04486 0.93442 1.21036 0.91025 1.02236 0.97422 1.21456 0.97952 0.99596 0.95313 1.21066 0.93822 0.95986 0.98243 1.22093 0.95435 1.02097 0.99534 1.22684 0.99876 0.94229 0.88781 1.67042 1.06622 1.12195 1.31664 1.21414 0.90144 0.95841 0.93716 1.22575 0.99859 0.95753 0.82788 1.21817 0.95882 0.95546 0.94826 1.21888 0.96898 1.01022 0.99429 1.20614 0.93997 0.92818 0.87820 1.42749 1.58535 1.11822 1.26800 1.19039 1.19441 0.97524 1.00865 0.89343 1.24643 0.99563 0.97574 0.97368 1.69705 1.37536 1.36239 1.14964 0.86598 0.78345 0.86902 0.77035 1.20967 1.21760 1.20325 0.92196 0.92002 0.93077 0.91263 0.89800 0.89133 0.88656 0.89933 0.89543 0.84958 0.84581 0.82459 0.91784 0.88985 0.92852 0.92181 0.91843 0.95687 0.95417 0.80590 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 7.93 37.16 0.29 -1.09 16 2 C -0.10 -1.29 3.31 -89.22 -0.30 -1.58 16 3 H 0.08 1.01 7.71 -51.93 -0.40 0.61 16 4 C 0.13 1.55 4.47 -2.41 -0.01 1.54 16 5 N -0.61 -9.38 3.29 -169.05 -0.56 -9.94 16 6 C 0.54 8.90 7.29 -10.98 -0.08 8.82 16 7 O -0.54 -10.99 15.78 5.55 0.09 -10.90 16 8 C -0.06 -0.67 2.54 -91.84 -0.23 -0.90 16 9 H 0.12 1.23 7.99 -51.93 -0.41 0.81 16 10 C -0.10 -1.07 6.32 -25.32 -0.16 -1.23 16 11 C -0.08 -0.61 6.77 -26.91 -0.18 -0.79 16 12 C -0.14 -1.31 6.16 -104.20 -0.64 -1.95 16 13 C -0.07 -0.49 10.17 -39.27 -0.40 -0.89 16 14 C -0.17 -1.19 10.12 -39.46 -0.40 -1.59 16 15 C 0.10 0.85 11.18 -17.62 -0.20 0.65 16 16 N -0.47 -5.09 6.85 -9.19 -0.06 -5.15 16 17 C 0.13 1.42 6.19 -82.04 -0.51 0.91 16 18 C 0.11 1.91 5.93 -2.19 -0.01 1.90 16 19 C -0.08 -1.25 0.73 -152.90 -0.11 -1.36 16 20 C -0.13 -1.96 7.11 37.16 0.26 -1.70 16 21 C 0.17 3.53 4.96 -4.04 -0.02 3.51 16 22 N -0.75 -18.57 4.60 -59.91 -0.28 -18.85 16 23 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 24 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 25 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 26 N -0.94 -30.43 13.97 55.49 0.78 -29.66 16 27 Si 0.88 23.11 27.74 -169.99 -4.71 18.39 16 28 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 30 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 31 H 0.06 0.57 6.62 -51.93 -0.34 0.23 16 32 H 0.06 0.63 6.98 -51.93 -0.36 0.27 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.79 6.74 -51.93 -0.35 0.44 16 35 H 0.08 0.98 6.88 -51.93 -0.36 0.62 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.19 7.06 -51.93 -0.37 0.82 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 44 H 0.09 1.92 6.96 -51.93 -0.36 1.56 16 45 H 0.05 0.65 6.68 -51.93 -0.35 0.30 16 46 H 0.06 1.02 6.74 -51.93 -0.35 0.67 16 47 H 0.06 0.88 6.89 -51.93 -0.36 0.52 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.36 8.72 3.85 -40.82 -0.16 8.56 16 51 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -36.36 388.44 -9.81 -46.17 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.97 Total: 6.99 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.95 Total: -2.92 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -0.12 Total: -63.59 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.71 Total: 18.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.36 -9.81 -46.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182402431.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.283 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds