Wall clock time and date at job start Wed Apr 1 2020 03:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.38931 * 2 1 4 4 C 1.54393 * 110.34451 * 237.77152 * 2 1 3 5 5 N 1.48145 * 104.61767 * 217.26102 * 4 2 1 6 6 C 1.34777 * 127.83783 * 219.57965 * 5 4 2 7 7 O 1.21283 * 119.99750 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99928 * 0.30631 * 6 5 4 9 9 H 1.08995 * 110.26430 * 60.32024 * 8 6 5 10 10 C 1.54334 * 110.29387 * 182.48099 * 8 6 5 11 11 C 1.54367 * 102.39048 * 145.27646 * 10 8 6 12 12 C 1.51226 * 105.12056 * 333.71193 * 11 10 8 13 13 C 1.38741 * 130.69735 * 197.15548 * 12 11 10 14 14 C 1.38577 * 118.56048 * 179.97438 * 13 12 11 15 15 C 1.38231 * 118.98622 * 359.97438 * 14 13 12 16 16 N 1.31689 * 120.80223 * 0.02562 * 15 14 13 17 17 C 1.32291 * 122.03262 * 0.02562 * 16 15 14 18 18 C 1.48150 * 104.32186 * 39.84627 * 5 4 2 19 19 C 1.54283 * 110.34553 * 122.23057 * 2 1 3 20 20 C 1.52996 * 110.34129 * 359.89733 * 19 2 1 21 21 C 1.52997 * 110.34531 * 237.73989 * 19 2 1 22 22 N 1.46503 * 109.47164 * 180.02562 * 21 19 2 23 23 C 1.36937 * 119.99952 * 180.02562 * 22 21 19 24 24 H 1.07998 * 120.00279 * 0.02562 * 23 22 21 25 25 C 1.38811 * 119.99568 * 179.97438 * 23 22 21 26 26 N 1.31627 * 119.99570 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 120.00431 * 359.97438 * 25 23 22 28 28 H 1.48493 * 109.46886 * 90.00022 * 27 25 23 29 29 H 1.48497 * 109.47066 * 209.99948 * 27 25 23 30 30 H 1.48497 * 109.46832 * 330.00053 * 27 25 23 31 31 H 1.08993 * 109.46935 * 180.77853 * 1 2 3 32 32 H 1.08997 * 109.46932 * 300.77745 * 1 2 3 33 33 H 1.09004 * 109.47108 * 60.77554 * 1 2 3 34 34 H 1.08999 * 110.40410 * 98.47338 * 4 2 1 35 35 H 1.08997 * 110.50101 * 336.09842 * 4 2 1 36 36 H 1.08997 * 110.82585 * 263.50173 * 10 8 6 37 37 H 1.08999 * 110.82631 * 27.05242 * 10 8 6 38 38 H 1.08993 * 110.31735 * 214.79894 * 11 10 8 39 39 H 1.09002 * 110.31420 * 92.61801 * 11 10 8 40 40 H 1.07996 * 120.72204 * 359.93601 * 13 12 11 41 41 H 1.07996 * 120.50768 * 180.02562 * 14 13 12 42 42 H 1.08000 * 119.59577 * 179.97438 * 15 14 13 43 43 H 1.08991 * 110.41004 * 78.93917 * 18 5 4 44 44 H 1.09001 * 110.40144 * 201.36830 * 18 5 4 45 45 H 1.08999 * 109.47655 * 59.99844 * 20 19 2 46 46 H 1.09003 * 109.47430 * 179.97438 * 20 19 2 47 47 H 1.09004 * 109.47022 * 299.99817 * 20 19 2 48 48 H 1.08997 * 109.47695 * 299.99940 * 21 19 2 49 49 H 1.09001 * 109.47031 * 60.00261 * 21 19 2 50 50 H 0.96999 * 119.99969 * 359.97438 * 22 21 19 51 51 H 0.96999 * 119.99512 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 3.2664 -1.4816 -0.7227 6 6 4.4424 -1.6663 -1.3547 7 8 5.3365 -2.2751 -0.8061 8 6 4.6485 -1.1110 -2.7404 9 1 4.5366 -0.0269 -2.7332 10 6 6.0430 -1.5038 -3.2725 11 6 5.7784 -1.7022 -4.7803 12 6 4.3154 -2.0722 -4.8787 13 6 3.5986 -2.6611 -5.9104 14 6 2.2442 -2.8913 -5.7289 15 6 1.6576 -2.5281 -4.5311 16 7 2.3692 -1.9710 -3.5733 17 6 3.6637 -1.7339 -3.7082 18 6 2.8779 -1.9478 0.6288 19 6 2.0664 -0.7715 1.2237 20 6 0.9062 -1.3013 2.0688 21 6 2.9692 0.1306 2.0673 22 7 3.4678 -0.6202 3.2223 23 6 4.3000 -0.0144 4.1254 24 1 4.5885 1.0170 3.9865 25 6 4.7720 -0.7258 5.2199 26 7 5.5723 -0.1436 6.0878 27 14 4.2714 -2.5092 5.4614 28 1 5.2487 -3.3944 4.7785 29 1 4.2474 -2.8245 6.9123 30 1 2.9201 -2.7263 4.8852 31 1 -0.3633 -1.0275 0.0140 32 1 -0.3633 0.5258 0.8829 33 1 -0.3633 0.5018 -0.8969 34 1 2.3400 -0.0793 -2.0206 35 1 1.3243 -1.4859 -1.5813 36 1 6.7611 -0.7005 -3.1076 37 1 6.3857 -2.4313 -2.8140 38 1 6.3996 -2.5082 -5.1707 39 1 5.9720 -0.7772 -5.3235 40 1 4.0854 -2.9336 -6.8351 41 1 1.6561 -3.3482 -6.5110 42 1 0.6027 -2.7026 -4.3792 43 1 2.2595 -2.8426 0.5590 44 1 3.7640 -2.1433 1.2326 45 1 0.2942 -1.9721 1.4659 46 1 1.3006 -1.8436 2.9281 47 1 0.2972 -0.4658 2.4143 48 1 3.8112 0.4690 1.4635 49 1 2.3999 0.9935 2.4128 50 1 3.2079 -1.5463 3.3476 51 1 5.9018 -0.6406 6.8528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182402431.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:00 Heat of formation + Delta-G solvation = 2.747486 kcal Electronic energy + Delta-G solvation = -31380.550186 eV Core-core repulsion = 27472.278597 eV Total energy + Delta-G solvation = -3908.271588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.16666 -41.03320 -39.56962 -36.96509 -36.62862 -34.75579 -33.57773 -33.40238 -31.46262 -30.34796 -29.72415 -28.22392 -27.13052 -26.64242 -24.85341 -24.42350 -23.25353 -22.39494 -22.14377 -20.21506 -20.10541 -19.27151 -18.19903 -17.87630 -17.42160 -16.81878 -16.65631 -16.61103 -16.15102 -15.89550 -15.44088 -15.32999 -15.07553 -14.84015 -14.65169 -14.53457 -14.38642 -14.16888 -13.86969 -13.71566 -13.53398 -13.13834 -13.03458 -12.97307 -12.90685 -12.68527 -12.64322 -12.59826 -12.54400 -12.28314 -12.13216 -12.04860 -11.90438 -11.59961 -11.33371 -11.20099 -11.07798 -11.03116 -10.61879 -10.20471 -9.67638 -9.64321 -9.33166 -8.07523 -5.39764 0.11678 0.36993 1.29458 1.35799 1.40816 1.52498 1.96168 2.43016 2.82856 2.92689 3.23716 3.28957 3.38889 3.54557 3.61623 3.75013 3.86040 3.90198 3.94701 4.12607 4.16145 4.22334 4.28093 4.32668 4.40153 4.46609 4.53266 4.60136 4.63681 4.66737 4.72185 4.77686 4.83664 4.84761 4.95501 4.97799 5.00972 5.03614 5.08869 5.15732 5.19023 5.23071 5.25653 5.31105 5.32398 5.37551 5.44764 5.65380 5.70539 5.79993 6.16910 6.59591 7.01526 7.03181 7.09881 7.79482 7.98848 9.14478 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.003310 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.311232 B = 8456.181790 C = 9527.333612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 H 0.075 0.925 4 C 0.136 3.864 5 N -0.609 5.609 6 C 0.530 3.470 7 O -0.592 6.592 8 C -0.050 4.050 9 H 0.130 0.870 10 C -0.106 4.106 11 C -0.069 4.069 12 C -0.149 4.149 13 C -0.069 4.069 14 C -0.162 4.162 15 C 0.089 3.911 16 N -0.489 5.489 17 C 0.097 3.903 18 C 0.110 3.890 19 C -0.070 4.070 20 C -0.131 4.131 21 C 0.174 3.826 22 N -0.753 5.753 23 C -0.232 4.232 24 H 0.054 0.946 25 C -0.062 4.062 26 N -0.983 5.983 27 Si 0.948 3.052 28 H -0.288 1.288 29 H -0.287 1.287 30 H -0.246 1.246 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.160 0.840 41 H 0.169 0.831 42 H 0.183 0.817 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.086 0.914 46 H 0.034 0.966 47 H 0.073 0.927 48 H 0.002 0.998 49 H 0.031 0.969 50 H 0.365 0.635 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 -4.296 -32.355 35.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 H 0.094 0.906 4 C 0.015 3.985 5 N -0.339 5.339 6 C 0.319 3.681 7 O -0.473 6.473 8 C -0.072 4.072 9 H 0.147 0.853 10 C -0.144 4.144 11 C -0.107 4.107 12 C -0.151 4.151 13 C -0.095 4.095 14 C -0.181 4.181 15 C -0.068 4.068 16 N -0.198 5.198 17 C -0.040 4.040 18 C -0.013 4.013 19 C -0.072 4.072 20 C -0.188 4.188 21 C 0.048 3.952 22 N -0.399 5.399 23 C -0.363 4.363 24 H 0.072 0.928 25 C -0.253 4.253 26 N -0.634 5.634 27 Si 0.775 3.225 28 H -0.215 1.215 29 H -0.213 1.213 30 H -0.171 1.171 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.178 0.822 41 H 0.186 0.814 42 H 0.200 0.800 43 H 0.100 0.900 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.053 0.947 47 H 0.092 0.908 48 H 0.020 0.980 49 H 0.049 0.951 50 H 0.199 0.801 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.108 -4.215 -31.271 34.168 hybrid contribution 0.986 -1.036 0.477 1.508 sum -12.121 -5.250 -30.793 33.507 Atomic orbital electron populations 1.21826 0.91499 1.03033 1.02652 1.22239 0.98195 0.98884 0.92322 0.90644 1.22603 0.85684 0.95320 0.94926 1.48890 1.13548 1.54708 1.16793 1.20572 0.80222 0.79362 0.87913 1.90695 1.43128 1.44736 1.68764 1.20868 0.95865 1.02028 0.88446 0.85290 1.22305 0.93398 1.03290 0.95452 1.21012 0.90656 1.03781 0.95222 1.21655 0.98420 0.99677 0.95303 1.21454 0.94220 0.95091 0.98703 1.22492 0.95445 1.00514 0.99660 1.23203 1.00912 0.93814 0.88900 1.66948 1.06628 1.13160 1.33042 1.21276 0.90643 0.97899 0.94202 1.22501 0.98289 0.97125 0.83375 1.21718 0.95292 0.94615 0.95548 1.21892 0.96513 1.01747 0.98681 1.20740 0.94033 0.93694 0.86732 1.42738 1.57863 1.12196 1.27113 1.19026 1.19475 0.96275 1.01555 0.92796 1.25458 1.00091 1.02480 0.97314 1.69878 1.39358 1.38300 1.15850 0.85516 0.79290 0.80668 0.77048 1.21481 1.21348 1.17075 0.91126 0.91964 0.90913 0.90183 0.88351 0.88263 0.91622 0.88677 0.87327 0.82231 0.81364 0.80050 0.90046 0.93676 0.89558 0.94732 0.90782 0.97971 0.95090 0.80072 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 7.93 71.98 0.57 -1.55 16 2 C -0.10 -2.20 3.31 -9.89 -0.03 -2.23 16 3 H 0.08 1.81 7.71 -2.39 -0.02 1.79 16 4 C 0.14 3.07 4.47 86.54 0.39 3.46 16 5 N -0.61 -18.99 3.29 -807.15 -2.66 -21.65 16 6 C 0.53 18.19 7.29 87.66 0.64 18.82 16 7 O -0.59 -26.14 15.78 -3.04 -0.05 -26.19 16 8 C -0.05 -1.22 2.54 -11.59 -0.03 -1.25 16 9 H 0.13 2.68 7.99 -2.39 -0.02 2.66 16 10 C -0.11 -2.24 6.32 31.51 0.20 -2.04 16 11 C -0.07 -0.95 6.77 30.48 0.21 -0.75 16 12 C -0.15 -2.44 6.16 -19.59 -0.12 -2.56 16 13 C -0.07 -0.79 10.17 22.47 0.23 -0.57 16 14 C -0.16 -1.59 10.12 22.35 0.23 -1.37 16 15 C 0.09 1.19 11.18 84.71 0.95 2.13 16 16 N -0.49 -9.60 6.85 -182.98 -1.25 -10.85 16 17 C 0.10 2.04 6.19 42.72 0.26 2.31 16 18 C 0.11 3.77 5.93 86.67 0.51 4.29 16 19 C -0.07 -2.16 0.73 -51.14 -0.04 -2.19 16 20 C -0.13 -3.51 7.11 71.98 0.51 -3.00 16 21 C 0.17 7.22 4.96 86.38 0.43 7.65 16 22 N -0.75 -38.15 4.60 -343.46 -1.58 -39.73 16 23 C -0.23 -14.25 10.47 84.03 0.88 -13.37 16 24 H 0.05 3.61 8.06 -2.91 -0.02 3.58 16 25 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 26 N -0.98 -66.29 13.97 21.65 0.30 -65.99 16 27 Si 0.95 48.75 27.74 68.60 1.90 50.65 16 28 H -0.29 -14.99 7.11 99.48 0.71 -14.29 16 29 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 30 H -0.25 -11.31 6.52 99.48 0.65 -10.66 16 31 H 0.07 1.01 6.62 -2.39 -0.02 0.99 16 32 H 0.06 1.03 6.98 -2.39 -0.02 1.01 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.67 6.74 -2.39 -0.02 1.65 16 35 H 0.10 1.99 6.88 -2.39 -0.02 1.98 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.77 7.06 -2.39 -0.02 1.76 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 42 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.08 2.47 7.84 -2.39 -0.02 2.45 16 44 H 0.04 1.97 6.96 -2.39 -0.02 1.95 16 45 H 0.09 1.76 6.68 -2.39 -0.02 1.74 16 46 H 0.03 1.10 6.74 -2.39 -0.02 1.08 16 47 H 0.07 1.84 6.89 -2.39 -0.02 1.82 16 48 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 49 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.37 17.80 3.85 -92.71 -0.36 17.44 16 51 H 0.26 16.53 8.31 -92.71 -0.77 15.76 16 Total: -1.00 -85.20 388.44 3.44 -81.76 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.52 Total: 27.64 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 6.25 Total: 4.36 kcal Atomic # 7 Polarization: -133.03 SS G_CDS: -5.19 Total: -138.22 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.05 Total: -26.19 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 1.90 Total: 50.65 kcal Total: -85.20 3.44 -81.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182402431.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.510 kcal (2) G-P(sol) polarization free energy of solvation -85.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds