Wall clock time and date at job start Wed Apr 1 2020 03:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.30393 * 2 1 4 4 C 1.54794 * 110.52610 * 237.77250 * 2 1 3 5 5 N 1.48143 * 104.41475 * 265.22427 * 4 2 1 6 6 C 1.34778 * 127.83865 * 140.37103 * 5 4 2 7 7 O 1.21282 * 120.00225 * 179.67671 * 6 5 4 8 8 C 1.50707 * 119.99522 * 359.67775 * 6 5 4 9 9 H 1.08992 * 115.55444 * 34.33119 * 8 6 5 10 10 C 1.53077 * 117.50735 * 248.60518 * 8 6 5 11 11 C 1.52994 * 59.98406 * 252.52497 * 10 8 6 12 12 H 1.09002 * 117.49489 * 107.50380 * 11 10 8 13 13 C 1.50697 * 117.50139 * 252.50096 * 11 10 8 14 14 C 1.38678 * 120.42112 * 188.77414 * 13 11 10 15 15 C 1.38627 * 118.42399 * 179.97438 * 14 13 11 16 16 C 1.38220 * 119.16050 * 0.02562 * 15 14 13 17 17 N 1.31860 * 120.76284 * 359.97438 * 16 15 14 18 18 C 1.31884 * 121.72590 * 0.02562 * 17 16 15 19 19 C 1.48141 * 104.32605 * 320.10522 * 5 4 2 20 20 C 1.54292 * 110.34145 * 122.17633 * 2 1 3 21 21 C 1.52992 * 110.43179 * 359.95532 * 20 2 1 22 22 C 1.53004 * 110.33795 * 237.74255 * 20 2 1 23 23 N 1.46500 * 109.46603 * 183.00842 * 22 20 2 24 24 C 1.36935 * 120.00083 * 179.97438 * 23 22 20 25 25 H 1.08002 * 119.99903 * 0.02562 * 24 23 22 26 26 C 1.38809 * 120.00465 * 179.97438 * 24 23 22 27 27 N 1.31621 * 119.99800 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00250 * 180.02562 * 26 24 23 29 29 H 1.48504 * 109.46582 * 90.00669 * 28 26 24 30 30 H 1.48495 * 109.47151 * 209.99974 * 28 26 24 31 31 H 1.48496 * 109.47249 * 330.00979 * 28 26 24 32 32 H 1.08997 * 109.47070 * 297.81898 * 1 2 3 33 33 H 1.08997 * 109.46959 * 57.82305 * 1 2 3 34 34 H 1.09005 * 109.46819 * 177.82107 * 1 2 3 35 35 H 1.09003 * 110.54110 * 146.48390 * 4 2 1 36 36 H 1.08997 * 110.46163 * 23.92473 * 4 2 1 37 37 H 1.09007 * 117.50539 * 145.05025 * 10 8 6 38 38 H 1.08999 * 117.49941 * 0.02562 * 10 8 6 39 39 H 1.07999 * 120.78603 * 359.97438 * 14 13 11 40 40 H 1.08000 * 120.41839 * 180.02562 * 15 14 13 41 41 H 1.07999 * 119.62072 * 180.02562 * 16 15 14 42 42 H 1.08003 * 119.61187 * 180.02562 * 18 17 16 43 43 H 1.09000 * 110.41138 * 158.63390 * 19 5 4 44 44 H 1.09004 * 110.40989 * 281.06373 * 19 5 4 45 45 H 1.08995 * 109.47058 * 177.04509 * 21 20 2 46 46 H 1.09004 * 109.47242 * 297.04357 * 21 20 2 47 47 H 1.08995 * 109.47358 * 57.04637 * 21 20 2 48 48 H 1.09003 * 109.47292 * 303.00664 * 22 20 2 49 49 H 1.08993 * 109.46994 * 63.01194 * 22 20 2 50 50 H 0.97002 * 120.00187 * 0.02562 * 23 22 20 51 51 H 0.96999 * 120.00107 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0728 -0.7731 -1.2263 5 7 2.3140 -2.1445 -0.7206 6 6 2.0775 -3.3118 -1.3513 7 8 2.3362 -4.3615 -0.8016 8 6 1.4915 -3.3127 -2.7398 9 1 1.8018 -2.4882 -3.3816 10 6 0.0631 -3.8379 -2.9041 11 6 1.2464 -4.6699 -3.4022 12 1 1.5090 -5.5621 -2.8337 13 6 1.4526 -4.7644 -4.8920 14 6 2.3887 -5.6426 -5.4171 15 6 2.5438 -5.6961 -6.7936 16 6 1.7663 -4.8779 -7.5914 17 7 0.8857 -4.0546 -7.0572 18 6 0.7112 -3.9772 -5.7522 19 6 2.8802 -1.9416 0.6332 20 6 2.0664 -0.7704 1.2245 21 6 0.9078 -1.3015 2.0708 22 6 2.9692 0.1327 2.0673 23 7 3.5244 -0.6368 3.1835 24 6 4.3676 -0.0341 4.0783 25 1 4.6230 1.0088 3.9615 26 6 4.8933 -0.7630 5.1362 27 7 4.5817 -2.0338 5.2789 28 14 6.0430 0.0596 6.3573 29 1 5.2501 0.6354 7.4730 30 1 6.9958 -0.9450 6.8941 31 1 6.7969 1.1421 5.6755 32 1 -0.3633 0.4796 0.9089 33 1 -0.3633 0.5473 -0.8698 34 1 -0.3633 -1.0270 -0.0391 35 1 3.0039 -0.3282 -1.5775 36 1 1.3322 -0.7876 -2.0259 37 1 -0.5663 -3.3588 -3.6541 38 1 -0.4527 -4.1823 -2.0077 39 1 2.9827 -6.2698 -4.7690 40 1 3.2632 -6.3687 -7.2370 41 1 1.8808 -4.9138 -8.6647 42 1 -0.0201 -3.2910 -5.3513 43 1 2.7496 -2.8387 1.2383 44 1 3.9355 -1.6764 0.5681 45 1 1.3028 -1.8866 2.9012 46 1 0.3281 -0.4643 2.4596 47 1 0.2669 -1.9321 1.4546 48 1 3.7818 0.5134 1.4486 49 1 2.3866 0.9678 2.4561 50 1 3.2953 -1.5736 3.2882 51 1 4.9493 -2.5433 6.0179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182684644.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:04 Heat of formation + Delta-G solvation = 41.020668 kcal Electronic energy + Delta-G solvation = -29900.334387 eV Core-core repulsion = 25993.722449 eV Total energy + Delta-G solvation = -3906.611939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.90332 -40.22978 -38.73555 -36.64642 -34.80401 -33.12240 -32.76699 -31.51001 -31.21314 -29.65112 -27.63673 -26.17621 -25.46700 -24.79175 -24.09656 -23.50425 -22.85408 -21.24422 -21.07256 -19.14099 -18.47524 -17.90280 -17.39233 -16.81605 -16.48860 -15.97412 -15.56712 -15.52139 -14.80156 -14.51627 -14.24374 -14.21348 -14.10688 -13.90071 -13.60824 -13.39496 -13.20393 -13.02260 -12.82636 -12.56738 -12.42864 -12.15100 -12.06304 -11.99910 -11.53195 -11.42827 -11.27847 -11.22126 -11.00384 -10.83186 -10.80461 -10.42708 -10.32979 -10.20011 -10.07309 -9.89443 -9.81427 -9.79536 -9.61609 -9.16313 -8.87587 -8.58332 -6.91506 -5.75345 -3.04293 0.67702 0.90975 2.46052 2.91331 3.33519 3.43963 3.48966 3.50958 3.71680 3.96097 4.22320 4.33897 4.46523 4.48206 4.56776 4.58774 4.60208 4.65766 4.74809 4.90259 4.90921 4.91623 5.13262 5.28830 5.31978 5.41937 5.43465 5.46328 5.49532 5.56922 5.58909 5.65121 5.66408 5.80422 5.81706 5.90462 5.97126 5.99888 6.07624 6.10098 6.17171 6.23306 6.26894 6.30960 6.44053 6.59224 6.67716 6.76895 6.86166 7.59557 7.64675 7.70423 8.20737 8.43127 9.54439 10.11814 10.46205 11.47282 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.002164 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.409664 B =12936.055425 C =13641.238930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.087 0.913 4 C 0.104 3.896 5 N -0.615 5.615 6 C 0.560 3.440 7 O -0.540 6.540 8 C -0.169 4.169 9 H 0.123 0.877 10 C -0.142 4.142 11 C -0.084 4.084 12 H 0.130 0.870 13 C -0.101 4.101 14 C -0.066 4.066 15 C -0.169 4.169 16 C 0.091 3.909 17 N -0.483 5.483 18 C 0.097 3.903 19 C 0.120 3.880 20 C -0.074 4.074 21 C -0.131 4.131 22 C 0.168 3.832 23 N -0.731 5.731 24 C -0.240 4.240 25 H 0.070 0.930 26 C -0.013 4.013 27 N -0.932 5.932 28 Si 0.906 3.094 29 H -0.290 1.290 30 H -0.292 1.292 31 H -0.282 1.282 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.020 0.980 49 H 0.023 0.977 50 H 0.385 0.615 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 -2.465 -24.678 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.106 0.894 4 C -0.019 4.019 5 N -0.348 5.348 6 C 0.349 3.651 7 O -0.417 6.417 8 C -0.190 4.190 9 H 0.141 0.859 10 C -0.179 4.179 11 C -0.103 4.103 12 H 0.148 0.852 13 C -0.103 4.103 14 C -0.092 4.092 15 C -0.189 4.189 16 C -0.066 4.066 17 N -0.191 5.191 18 C -0.059 4.059 19 C -0.002 4.002 20 C -0.076 4.076 21 C -0.188 4.188 22 C 0.040 3.960 23 N -0.375 5.375 24 C -0.371 4.371 25 H 0.088 0.912 26 C -0.209 4.209 27 N -0.580 5.580 28 Si 0.738 3.262 29 H -0.218 1.218 30 H -0.218 1.218 31 H -0.208 1.208 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.038 0.962 49 H 0.040 0.960 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.558 -2.481 -24.904 27.163 hybrid contribution 1.305 -0.290 1.338 1.891 sum -9.253 -2.770 -23.566 25.469 Atomic orbital electron populations 1.21895 0.94504 1.01834 1.01572 1.22201 0.96251 0.99481 0.93756 0.89424 1.22589 1.00515 0.81865 0.96932 1.48899 1.62653 1.05151 1.18054 1.19072 0.77970 0.82284 0.85800 1.90729 1.52988 1.30611 1.67391 1.22327 1.01565 0.99164 0.95940 0.85869 1.23150 0.89370 1.01709 1.03659 1.20988 1.02796 0.95699 0.90832 0.85167 1.20148 0.97600 0.97909 0.94624 1.21514 0.95698 0.96595 0.95352 1.22173 1.01302 1.01089 0.94294 1.22794 0.91578 0.91665 1.00587 1.67719 1.18032 1.19735 1.13586 1.22694 0.97584 0.97125 0.88544 1.22494 0.97268 0.98976 0.81435 1.21699 0.96212 0.95141 0.94507 1.21855 0.96847 1.00739 0.99400 1.20719 0.93324 0.92857 0.89120 1.42391 1.55842 1.11093 1.28215 1.19198 1.19550 0.94692 1.03666 0.91242 1.24741 1.01076 0.95920 0.99212 1.69657 1.48475 1.07042 1.32829 0.86203 0.80466 0.78107 0.81473 1.21781 1.21816 1.20816 0.91882 0.93169 0.92415 0.90983 0.90407 0.87339 0.87321 0.84478 0.84584 0.82741 0.82741 0.89673 0.90387 0.91601 0.92471 0.93357 0.96236 0.95954 0.78072 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 7.95 37.16 0.30 -1.11 16 2 C -0.10 -1.11 3.31 -89.00 -0.29 -1.41 16 3 H 0.09 0.95 7.71 -51.93 -0.40 0.55 16 4 C 0.10 1.09 6.39 -2.19 -0.01 1.08 16 5 N -0.61 -8.45 3.31 -169.06 -0.56 -9.01 16 6 C 0.56 8.00 7.70 -10.98 -0.08 7.92 16 7 O -0.54 -9.92 16.52 5.56 0.09 -9.82 16 8 C -0.17 -1.68 4.95 -91.73 -0.45 -2.13 16 9 H 0.12 1.04 7.64 -51.93 -0.40 0.65 16 10 C -0.14 -1.13 9.58 -26.69 -0.26 -1.38 16 11 C -0.08 -0.78 5.57 -91.78 -0.51 -1.30 16 12 H 0.13 1.40 7.67 -51.93 -0.40 1.00 16 13 C -0.10 -0.89 5.62 -104.48 -0.59 -1.47 16 14 C -0.07 -0.54 9.89 -39.28 -0.39 -0.92 16 15 C -0.17 -1.19 10.11 -39.44 -0.40 -1.59 16 16 C 0.09 0.71 11.18 -17.55 -0.20 0.51 16 17 N -0.48 -4.69 10.36 -13.25 -0.14 -4.83 16 18 C 0.10 0.85 10.47 -17.55 -0.18 0.67 16 19 C 0.12 2.00 5.54 -2.41 -0.01 1.98 16 20 C -0.07 -1.14 0.73 -153.11 -0.11 -1.25 16 21 C -0.13 -2.06 7.08 37.15 0.26 -1.79 16 22 C 0.17 3.20 4.85 -4.04 -0.02 3.18 16 23 N -0.73 -17.94 5.12 -59.91 -0.31 -18.24 16 24 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 25 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 26 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 27 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 28 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 30 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 31 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 32 H 0.06 0.66 6.89 -51.93 -0.36 0.30 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.61 6.73 -51.93 -0.35 0.26 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.63 6.94 -51.93 -0.36 0.27 16 37 H 0.11 0.61 6.21 -51.92 -0.32 0.29 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.16 1.04 6.04 -52.48 -0.32 0.72 16 43 H 0.08 1.65 7.60 -51.93 -0.39 1.25 16 44 H 0.08 1.41 7.86 -51.93 -0.41 1.00 16 45 H 0.07 1.23 6.99 -51.93 -0.36 0.86 16 46 H 0.06 0.85 6.99 -51.93 -0.36 0.48 16 47 H 0.05 0.69 6.62 -51.93 -0.34 0.35 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.38 10.03 6.27 -40.82 -0.26 9.77 16 51 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 404.85 15.07 6.10 6.10 Total: -1.00 -33.71 404.85 -10.27 -43.99 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.96 Total: 8.17 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.20 Total: -6.26 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.28 Total: -59.57 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.71 -10.27 -43.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182684644.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.006 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds