Wall clock time and date at job start Wed Apr 1 2020 03:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.30393 * 2 1 4 4 C 1.54794 * 110.52610 * 237.77250 * 2 1 3 5 5 N 1.48143 * 104.41475 * 265.22427 * 4 2 1 6 6 C 1.34778 * 127.83865 * 140.37103 * 5 4 2 7 7 O 1.21282 * 120.00225 * 179.67671 * 6 5 4 8 8 C 1.50707 * 119.99522 * 359.67775 * 6 5 4 9 9 H 1.08992 * 115.55444 * 34.33119 * 8 6 5 10 10 C 1.53077 * 117.50735 * 248.60518 * 8 6 5 11 11 C 1.52994 * 59.98406 * 252.52497 * 10 8 6 12 12 H 1.09002 * 117.49489 * 107.50380 * 11 10 8 13 13 C 1.50697 * 117.50139 * 252.50096 * 11 10 8 14 14 C 1.38678 * 120.42112 * 188.77414 * 13 11 10 15 15 C 1.38627 * 118.42399 * 179.97438 * 14 13 11 16 16 C 1.38220 * 119.16050 * 0.02562 * 15 14 13 17 17 N 1.31860 * 120.76284 * 359.97438 * 16 15 14 18 18 C 1.31884 * 121.72590 * 0.02562 * 17 16 15 19 19 C 1.48141 * 104.32605 * 320.10522 * 5 4 2 20 20 C 1.54292 * 110.34145 * 122.17633 * 2 1 3 21 21 C 1.52992 * 110.43179 * 359.95532 * 20 2 1 22 22 C 1.53004 * 110.33795 * 237.74255 * 20 2 1 23 23 N 1.46500 * 109.46603 * 183.00842 * 22 20 2 24 24 C 1.36935 * 120.00083 * 179.97438 * 23 22 20 25 25 H 1.08002 * 119.99903 * 0.02562 * 24 23 22 26 26 C 1.38809 * 120.00465 * 179.97438 * 24 23 22 27 27 N 1.31621 * 119.99800 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00250 * 180.02562 * 26 24 23 29 29 H 1.48504 * 109.46582 * 90.00669 * 28 26 24 30 30 H 1.48495 * 109.47151 * 209.99974 * 28 26 24 31 31 H 1.48496 * 109.47249 * 330.00979 * 28 26 24 32 32 H 1.08997 * 109.47070 * 297.81898 * 1 2 3 33 33 H 1.08997 * 109.46959 * 57.82305 * 1 2 3 34 34 H 1.09005 * 109.46819 * 177.82107 * 1 2 3 35 35 H 1.09003 * 110.54110 * 146.48390 * 4 2 1 36 36 H 1.08997 * 110.46163 * 23.92473 * 4 2 1 37 37 H 1.09007 * 117.50539 * 145.05025 * 10 8 6 38 38 H 1.08999 * 117.49941 * 0.02562 * 10 8 6 39 39 H 1.07999 * 120.78603 * 359.97438 * 14 13 11 40 40 H 1.08000 * 120.41839 * 180.02562 * 15 14 13 41 41 H 1.07999 * 119.62072 * 180.02562 * 16 15 14 42 42 H 1.08003 * 119.61187 * 180.02562 * 18 17 16 43 43 H 1.09000 * 110.41138 * 158.63390 * 19 5 4 44 44 H 1.09004 * 110.40989 * 281.06373 * 19 5 4 45 45 H 1.08995 * 109.47058 * 177.04509 * 21 20 2 46 46 H 1.09004 * 109.47242 * 297.04357 * 21 20 2 47 47 H 1.08995 * 109.47358 * 57.04637 * 21 20 2 48 48 H 1.09003 * 109.47292 * 303.00664 * 22 20 2 49 49 H 1.08993 * 109.46994 * 63.01194 * 22 20 2 50 50 H 0.97002 * 120.00187 * 0.02562 * 23 22 20 51 51 H 0.96999 * 120.00107 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0728 -0.7731 -1.2263 5 7 2.3140 -2.1445 -0.7206 6 6 2.0775 -3.3118 -1.3513 7 8 2.3362 -4.3615 -0.8016 8 6 1.4915 -3.3127 -2.7398 9 1 1.8018 -2.4882 -3.3816 10 6 0.0631 -3.8379 -2.9041 11 6 1.2464 -4.6699 -3.4022 12 1 1.5090 -5.5621 -2.8337 13 6 1.4526 -4.7644 -4.8920 14 6 2.3887 -5.6426 -5.4171 15 6 2.5438 -5.6961 -6.7936 16 6 1.7663 -4.8779 -7.5914 17 7 0.8857 -4.0546 -7.0572 18 6 0.7112 -3.9772 -5.7522 19 6 2.8802 -1.9416 0.6332 20 6 2.0664 -0.7704 1.2245 21 6 0.9078 -1.3015 2.0708 22 6 2.9692 0.1327 2.0673 23 7 3.5244 -0.6368 3.1835 24 6 4.3676 -0.0341 4.0783 25 1 4.6230 1.0088 3.9615 26 6 4.8933 -0.7630 5.1362 27 7 4.5817 -2.0338 5.2789 28 14 6.0430 0.0596 6.3573 29 1 5.2501 0.6354 7.4730 30 1 6.9958 -0.9450 6.8941 31 1 6.7969 1.1421 5.6755 32 1 -0.3633 0.4796 0.9089 33 1 -0.3633 0.5473 -0.8698 34 1 -0.3633 -1.0270 -0.0391 35 1 3.0039 -0.3282 -1.5775 36 1 1.3322 -0.7876 -2.0259 37 1 -0.5663 -3.3588 -3.6541 38 1 -0.4527 -4.1823 -2.0077 39 1 2.9827 -6.2698 -4.7690 40 1 3.2632 -6.3687 -7.2370 41 1 1.8808 -4.9138 -8.6647 42 1 -0.0201 -3.2910 -5.3513 43 1 2.7496 -2.8387 1.2383 44 1 3.9355 -1.6764 0.5681 45 1 1.3028 -1.8866 2.9012 46 1 0.3281 -0.4643 2.4596 47 1 0.2669 -1.9321 1.4546 48 1 3.7818 0.5134 1.4486 49 1 2.3866 0.9678 2.4561 50 1 3.2953 -1.5736 3.2882 51 1 4.9493 -2.5433 6.0179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182684644.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:03 Heat of formation + Delta-G solvation = 20.560339 kcal Electronic energy + Delta-G solvation = -29901.221614 eV Core-core repulsion = 25993.722449 eV Total energy + Delta-G solvation = -3907.499165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.75087 -41.12624 -39.79735 -37.54948 -36.49203 -34.56583 -33.36439 -33.05048 -31.85033 -31.20696 -28.77708 -27.62585 -26.63169 -25.54591 -25.23701 -24.58990 -23.92147 -22.39590 -21.81242 -20.21275 -19.81312 -19.08063 -18.49235 -17.92638 -17.24096 -17.19060 -16.57170 -16.48925 -16.23509 -15.64212 -15.47260 -15.37826 -15.04187 -14.84834 -14.72623 -14.70004 -14.52807 -13.97553 -13.91578 -13.78880 -13.34913 -13.16922 -13.04894 -13.02553 -12.84524 -12.70830 -12.59189 -12.45742 -12.40299 -12.09452 -12.08744 -11.94908 -11.57674 -11.48243 -11.36854 -11.20423 -10.97148 -10.90880 -10.66496 -10.39716 -9.79610 -9.74403 -8.98036 -7.94104 -5.22601 0.09467 0.31931 1.42570 1.46087 1.48019 1.56387 1.85885 2.55867 2.64964 3.02969 3.25225 3.39297 3.46187 3.57188 3.62797 3.68336 3.75946 3.82834 3.91079 4.01319 4.08289 4.11737 4.19645 4.27886 4.29742 4.34780 4.36383 4.55802 4.57253 4.65382 4.68459 4.74240 4.78667 4.84739 4.89199 4.90676 4.93912 5.02816 5.04531 5.08300 5.10663 5.14512 5.22153 5.28090 5.36199 5.39147 5.45859 5.51354 5.62150 5.76150 6.27517 6.56951 7.01730 7.08855 7.33901 8.11331 8.32944 9.29551 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.002164 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.409664 B =12936.055425 C =13641.238930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.103 0.897 4 C 0.104 3.896 5 N -0.613 5.613 6 C 0.552 3.448 7 O -0.594 6.594 8 C -0.168 4.168 9 H 0.148 0.852 10 C -0.120 4.120 11 C -0.087 4.087 12 H 0.107 0.893 13 C -0.108 4.108 14 C -0.081 4.081 15 C -0.166 4.166 16 C 0.083 3.917 17 N -0.507 5.507 18 C 0.093 3.907 19 C 0.125 3.875 20 C -0.066 4.066 21 C -0.122 4.122 22 C 0.166 3.834 23 N -0.744 5.744 24 C -0.239 4.239 25 H 0.079 0.921 26 C -0.080 4.080 27 N -0.972 5.972 28 Si 0.973 3.027 29 H -0.287 1.287 30 H -0.299 1.299 31 H -0.267 1.267 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.139 0.861 40 H 0.161 0.839 41 H 0.179 0.821 42 H 0.175 0.825 43 H 0.044 0.956 44 H 0.057 0.943 45 H 0.024 0.976 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.025 0.975 49 H 0.030 0.970 50 H 0.373 0.627 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.531 -0.119 -27.685 29.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.121 0.879 4 C -0.018 4.018 5 N -0.344 5.344 6 C 0.343 3.657 7 O -0.475 6.475 8 C -0.189 4.189 9 H 0.166 0.834 10 C -0.157 4.157 11 C -0.107 4.107 12 H 0.125 0.875 13 C -0.110 4.110 14 C -0.107 4.107 15 C -0.186 4.186 16 C -0.073 4.073 17 N -0.215 5.215 18 C -0.063 4.063 19 C 0.001 3.999 20 C -0.067 4.067 21 C -0.180 4.180 22 C 0.039 3.961 23 N -0.387 5.387 24 C -0.371 4.371 25 H 0.097 0.903 26 C -0.272 4.272 27 N -0.623 5.623 28 Si 0.803 3.197 29 H -0.214 1.214 30 H -0.226 1.226 31 H -0.192 1.192 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.161 0.839 38 H 0.118 0.882 39 H 0.157 0.843 40 H 0.178 0.822 41 H 0.196 0.804 42 H 0.192 0.808 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.043 0.957 49 H 0.048 0.952 50 H 0.205 0.795 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.818 -0.063 -27.960 30.355 hybrid contribution 1.700 -1.046 2.212 2.979 sum -10.118 -1.108 -25.749 27.687 Atomic orbital electron populations 1.21869 0.92796 1.01899 1.02857 1.22220 0.97578 0.99593 0.91499 0.87857 1.22863 1.02241 0.79358 0.97332 1.48972 1.61924 1.06759 1.16765 1.19938 0.77129 0.81453 0.87183 1.90702 1.55223 1.32583 1.69022 1.22264 1.03069 1.00420 0.93158 0.83400 1.23291 0.88491 1.00057 1.03815 1.20866 1.04001 0.94648 0.91148 0.87502 1.20107 0.98242 0.98629 0.94004 1.21753 0.95903 0.96833 0.96252 1.22439 1.01385 1.01057 0.93701 1.23259 0.91015 0.91121 1.01910 1.67761 1.18991 1.20717 1.14059 1.22959 0.97769 0.97288 0.88296 1.22164 0.96742 0.97812 0.83156 1.21574 0.95105 0.94432 0.95607 1.21767 0.97101 1.00752 0.98336 1.20913 0.93942 0.93164 0.88034 1.42631 1.55731 1.10974 1.29345 1.19651 1.18813 0.95034 1.03616 0.90330 1.25589 1.03459 0.96576 1.01582 1.69839 1.50289 1.08642 1.33548 0.85135 0.78332 0.77163 0.79110 1.21423 1.22621 1.19206 0.92379 0.90012 0.93094 0.89838 0.86661 0.83930 0.88157 0.84280 0.82175 0.80417 0.80810 0.93744 0.92447 0.95661 0.91297 0.92053 0.95674 0.95215 0.79508 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.95 71.98 0.57 -1.64 16 2 C -0.09 -1.78 3.31 -9.74 -0.03 -1.82 16 3 H 0.10 1.82 7.71 -2.39 -0.02 1.80 16 4 C 0.10 1.84 6.39 86.68 0.55 2.40 16 5 N -0.61 -16.58 3.31 -807.16 -2.67 -19.25 16 6 C 0.55 15.86 7.70 87.66 0.67 16.53 16 7 O -0.59 -23.19 16.52 -3.04 -0.05 -23.24 16 8 C -0.17 -3.03 4.95 -11.51 -0.06 -3.09 16 9 H 0.15 1.95 7.64 -2.39 -0.02 1.93 16 10 C -0.12 -1.61 9.58 30.62 0.29 -1.32 16 11 C -0.09 -1.56 5.57 -11.54 -0.06 -1.62 16 12 H 0.11 2.42 7.67 -2.39 -0.02 2.41 16 13 C -0.11 -1.74 5.62 -19.78 -0.11 -1.85 16 14 C -0.08 -1.25 9.89 22.47 0.22 -1.03 16 15 C -0.17 -2.03 10.11 22.36 0.23 -1.80 16 16 C 0.08 1.11 11.18 84.68 0.95 2.06 16 17 N -0.51 -8.67 10.36 -195.85 -2.03 -10.70 16 18 C 0.09 1.39 10.47 84.67 0.89 2.28 16 19 C 0.12 4.35 5.54 86.53 0.48 4.83 16 20 C -0.07 -2.01 0.73 -51.27 -0.04 -2.04 16 21 C -0.12 -3.91 7.08 71.98 0.51 -3.40 16 22 C 0.17 6.31 4.85 86.38 0.42 6.72 16 23 N -0.74 -37.69 5.12 -343.45 -1.76 -39.45 16 24 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 25 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 26 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 27 N -0.97 -61.26 13.06 21.65 0.28 -60.97 16 28 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 29 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 30 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 31 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 32 H 0.06 1.02 6.89 -2.39 -0.02 1.00 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.91 6.73 -2.38 -0.02 0.89 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.12 1.27 6.94 -2.39 -0.02 1.25 16 37 H 0.14 0.96 6.21 -2.38 -0.01 0.95 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.18 1.68 6.04 -2.91 -0.02 1.66 16 43 H 0.04 1.89 7.60 -2.39 -0.02 1.87 16 44 H 0.06 2.20 7.86 -2.39 -0.02 2.18 16 45 H 0.02 0.99 6.99 -2.39 -0.02 0.97 16 46 H 0.07 2.00 6.99 -2.38 -0.02 1.99 16 47 H 0.06 1.77 6.62 -2.39 -0.02 1.75 16 48 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.37 20.61 6.27 -92.71 -0.58 20.03 16 51 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -77.96 404.85 2.94 -75.01 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.36 Total: 31.25 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 6.79 Total: -1.54 kcal Atomic # 7 Polarization: -124.20 SS G_CDS: -6.18 Total: -130.38 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -77.96 2.94 -75.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182684644.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.575 kcal (2) G-P(sol) polarization free energy of solvation -77.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds