Wall clock time and date at job start Wed Apr 1 2020 03:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.30596 * 2 1 4 4 C 1.54388 * 110.34007 * 237.82386 * 2 1 3 5 5 N 1.48315 * 104.53802 * 217.33520 * 4 2 1 6 6 C 1.34778 * 127.76759 * 219.51664 * 5 4 2 7 7 O 1.21281 * 119.99402 * 179.97438 * 6 5 4 8 8 C 1.50694 * 120.00325 * 359.93362 * 6 5 4 9 9 H 1.09002 * 110.73080 * 56.59232 * 8 6 5 10 10 C 1.54368 * 110.82404 * 179.97438 * 8 6 5 11 11 C 1.51226 * 105.11972 * 144.51809 * 10 8 6 12 12 C 1.38737 * 130.69379 * 162.86569 * 11 10 8 13 13 C 1.38578 * 118.55686 * 180.02562 * 12 11 10 14 14 C 1.38226 * 118.98894 * 0.02562 * 13 12 11 15 15 N 1.31678 * 120.80460 * 359.97438 * 14 13 12 16 16 C 1.32302 * 122.03203 * 359.97438 * 15 14 13 17 17 C 1.51476 * 130.14466 * 180.02562 * 16 15 14 18 18 C 1.48145 * 104.39219 * 39.46189 * 5 4 2 19 19 C 1.54287 * 110.34326 * 122.17851 * 2 1 3 20 20 C 1.53001 * 110.34144 * 359.97438 * 19 2 1 21 21 C 1.53003 * 110.33734 * 237.84431 * 19 2 1 22 22 N 1.46499 * 109.46663 * 179.97438 * 21 19 2 23 23 C 1.36946 * 119.99659 * 179.97438 * 22 21 19 24 24 H 1.07996 * 119.99923 * 0.02562 * 23 22 21 25 25 C 1.38814 * 119.99680 * 180.02562 * 23 22 21 26 26 N 1.31616 * 120.00322 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99815 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.46886 * 60.00439 * 27 25 23 29 29 H 1.48498 * 109.46885 * 180.02562 * 27 25 23 30 30 H 1.48495 * 109.47052 * 300.00222 * 27 25 23 31 31 H 1.09001 * 109.47002 * 299.29704 * 1 2 3 32 32 H 1.08993 * 109.46955 * 59.30141 * 1 2 3 33 33 H 1.09000 * 109.47050 * 179.29970 * 1 2 3 34 34 H 1.09003 * 110.40960 * 336.04754 * 4 2 1 35 35 H 1.09003 * 110.40777 * 98.47685 * 4 2 1 36 36 H 1.09000 * 110.31029 * 263.42725 * 10 8 6 37 37 H 1.08997 * 110.31341 * 25.60421 * 10 8 6 38 38 H 1.08004 * 120.72213 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.50000 * 179.97438 * 13 12 11 40 40 H 1.08005 * 119.59197 * 179.97438 * 14 13 12 41 41 H 1.09001 * 110.29292 * 78.25448 * 17 16 15 42 42 H 1.08997 * 110.29403 * 316.11993 * 17 16 15 43 43 H 1.08996 * 110.40797 * 201.69133 * 18 5 4 44 44 H 1.09001 * 110.50784 * 79.30814 * 18 5 4 45 45 H 1.09000 * 109.46947 * 60.00425 * 20 19 2 46 46 H 1.09006 * 109.46857 * 180.02562 * 20 19 2 47 47 H 1.09000 * 109.47008 * 299.99982 * 20 19 2 48 48 H 1.08989 * 109.47473 * 299.99899 * 21 19 2 49 49 H 1.09005 * 109.47157 * 60.00361 * 21 19 2 50 50 H 0.96994 * 120.00711 * 0.02562 * 22 21 19 51 51 H 0.97000 * 120.00428 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7709 -1.2253 5 7 3.2664 -1.4825 -0.7213 6 6 4.4424 -1.6679 -1.3531 7 8 5.3363 -2.2764 -0.8041 8 6 4.6461 -1.1199 -2.7420 9 1 4.4687 -0.0446 -2.7624 10 6 6.0616 -1.4519 -3.2608 11 6 5.8902 -1.7020 -4.7423 12 6 6.8230 -1.7300 -5.7689 13 6 6.3825 -1.9872 -7.0574 14 6 5.0348 -2.2053 -7.2736 15 7 4.1774 -2.1711 -6.2748 16 6 4.5583 -1.9300 -5.0310 17 6 3.7416 -1.8490 -3.7578 18 6 2.8802 -1.9416 0.6333 19 6 2.0664 -0.7704 1.2244 20 6 0.9062 -1.3011 2.0690 21 6 2.9672 0.1334 2.0686 22 7 3.4649 -0.6160 3.2249 23 6 4.2960 -0.0088 4.1281 24 1 4.5843 1.0225 3.9883 25 6 4.7680 -0.7191 5.2234 26 7 4.4171 -1.9761 5.3936 27 14 5.9024 0.1089 6.4552 28 1 5.2115 1.2779 7.0563 29 1 6.2622 -0.8573 7.5239 30 1 7.1355 0.5641 5.7643 31 1 -0.3633 0.5029 0.8962 32 1 -0.3633 0.5246 -0.8836 33 1 -0.3633 -1.0276 -0.0126 34 1 1.3234 -1.4846 -1.5808 35 1 2.3400 -0.0775 -2.0207 36 1 6.7328 -0.6094 -3.0945 37 1 6.4453 -2.3453 -2.7681 38 1 7.8696 -1.5544 -5.5683 39 1 7.0816 -2.0159 -7.8802 40 1 4.6808 -2.4062 -8.2741 41 1 3.4995 -2.8497 -3.3997 42 1 2.8297 -1.2771 -3.9294 43 1 3.7673 -2.1313 1.2376 44 1 2.2646 -2.8390 0.5712 45 1 0.2954 -1.9729 1.4659 46 1 1.3007 -1.8418 2.9293 47 1 0.2961 -0.4661 2.4136 48 1 3.8092 0.4728 1.4654 49 1 2.3962 0.9956 2.4133 50 1 3.2063 -1.5424 3.3503 51 1 4.7472 -2.4726 6.1588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183278776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:45 Heat of formation + Delta-G solvation = 15.211798 kcal Electronic energy + Delta-G solvation = -30471.561280 eV Core-core repulsion = 26563.830185 eV Total energy + Delta-G solvation = -3907.731095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20207 -40.14124 -38.46110 -36.03270 -34.75213 -33.28434 -32.88851 -31.52658 -30.11828 -29.47498 -28.09357 -27.06381 -25.93028 -25.58625 -24.02672 -23.22977 -22.13362 -21.68029 -20.95015 -19.09063 -18.32475 -17.59025 -16.96805 -16.79158 -16.62487 -15.81238 -15.66588 -15.06132 -14.86638 -14.56664 -14.40873 -14.14312 -13.79536 -13.64369 -13.38684 -13.21406 -13.15514 -13.03094 -12.98026 -12.67820 -12.48729 -12.08068 -11.96645 -11.89433 -11.58613 -11.56969 -11.43846 -11.38190 -11.19397 -10.95659 -10.78038 -10.46237 -10.30147 -10.18849 -10.01641 -9.88616 -9.70509 -9.58464 -9.55435 -8.97917 -8.82873 -8.55950 -6.86905 -5.71831 -2.99836 0.80188 0.99854 2.67542 2.98051 3.47463 3.47509 3.51800 3.52752 3.64141 4.10247 4.37354 4.46435 4.57073 4.61349 4.64741 4.65699 4.82520 4.83309 4.88228 4.96620 5.07295 5.26227 5.31303 5.38534 5.40390 5.43207 5.47773 5.49791 5.51928 5.58738 5.67102 5.70811 5.75404 5.81937 5.87404 5.89790 5.97858 5.98935 6.04426 6.13559 6.20228 6.24939 6.34530 6.41160 6.45287 6.56703 6.71931 6.82145 6.90507 7.68774 7.70410 7.73759 8.26483 8.47207 9.58363 10.15662 10.50215 11.51087 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.002677 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.281920 B =10455.372995 C =11967.613062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.082 0.918 4 C 0.104 3.896 5 N -0.616 5.616 6 C 0.542 3.458 7 O -0.528 6.528 8 C -0.104 4.104 9 H 0.109 0.891 10 C -0.067 4.067 11 C -0.141 4.141 12 C -0.065 4.065 13 C -0.174 4.174 14 C 0.099 3.901 15 N -0.479 5.479 16 C 0.119 3.881 17 C -0.056 4.056 18 C 0.113 3.887 19 C -0.075 4.075 20 C -0.134 4.134 21 C 0.169 3.831 22 N -0.729 5.729 23 C -0.238 4.238 24 H 0.068 0.932 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.287 1.287 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.157 0.843 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.017 0.983 49 H 0.020 0.980 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.727 1.820 -25.118 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.100 0.900 4 C -0.019 4.019 5 N -0.350 5.350 6 C 0.329 3.671 7 O -0.404 6.404 8 C -0.126 4.126 9 H 0.127 0.873 10 C -0.105 4.105 11 C -0.143 4.143 12 C -0.090 4.090 13 C -0.194 4.194 14 C -0.059 4.059 15 N -0.187 5.187 16 C -0.019 4.019 17 C -0.095 4.095 18 C -0.009 4.009 19 C -0.076 4.076 20 C -0.192 4.192 21 C 0.041 3.959 22 N -0.374 5.374 23 C -0.369 4.369 24 H 0.086 0.914 25 C -0.209 4.209 26 N -0.582 5.582 27 Si 0.737 3.263 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.174 0.826 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.034 0.966 49 H 0.037 0.963 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.908 1.424 -24.957 25.475 hybrid contribution 1.519 0.381 0.793 1.755 sum -3.389 1.806 -24.164 24.468 Atomic orbital electron populations 1.21892 0.94157 1.02121 1.01738 1.22150 0.96070 0.99747 0.93886 0.90004 1.22586 0.87019 0.95437 0.96901 1.48916 1.12567 1.55530 1.17953 1.19702 0.80701 0.79971 0.86695 1.90759 1.40946 1.41517 1.67167 1.21925 0.96814 1.01813 0.92021 0.87262 1.20900 0.95909 1.04317 0.89324 1.21505 0.95282 1.00688 0.96793 1.21098 0.99867 0.96358 0.91708 1.22077 0.97604 1.02174 0.97501 1.22620 0.89521 0.96105 0.97635 1.66834 1.39814 1.12814 0.99281 1.21733 0.92934 0.95072 0.92118 1.20890 0.97573 1.02302 0.88687 1.22549 1.00441 0.95754 0.82140 1.21701 0.95969 0.95451 0.94519 1.21873 0.96609 1.00888 0.99790 1.20644 0.93695 0.92943 0.88578 1.42383 1.57373 1.12874 1.24741 1.19143 1.20545 0.95649 1.01564 0.91441 1.24710 1.01088 0.96079 0.98995 1.69634 1.49064 1.08425 1.31061 0.86282 0.80822 0.78136 0.81035 1.21351 1.21712 1.21342 0.91737 0.93058 0.92087 0.90863 0.90609 0.89613 0.87631 0.84810 0.84540 0.82585 0.88782 0.88902 0.88266 0.91555 0.93100 0.91286 0.92185 0.96554 0.96251 0.78095 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.93 37.16 0.29 -1.00 16 2 C -0.10 -1.12 3.30 -89.22 -0.29 -1.41 16 3 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 4 C 0.10 1.05 5.85 -2.31 -0.01 1.04 16 5 N -0.62 -8.60 3.32 -169.17 -0.56 -9.16 16 6 C 0.54 8.13 7.15 -10.99 -0.08 8.05 16 7 O -0.53 -10.37 15.77 5.56 0.09 -10.28 16 8 C -0.10 -1.13 2.64 -90.36 -0.24 -1.37 16 9 H 0.11 1.01 7.84 -51.93 -0.41 0.60 16 10 C -0.07 -0.74 6.10 -26.91 -0.16 -0.90 16 11 C -0.14 -1.48 6.16 -104.20 -0.64 -2.12 16 12 C -0.06 -0.57 10.17 -39.27 -0.40 -0.97 16 13 C -0.17 -1.33 10.12 -39.46 -0.40 -1.73 16 14 C 0.10 0.87 11.18 -17.62 -0.20 0.67 16 15 N -0.48 -5.44 10.35 -9.19 -0.10 -5.54 16 16 C 0.12 1.33 7.32 -82.03 -0.60 0.72 16 17 C -0.06 -0.56 5.64 -26.80 -0.15 -0.71 16 18 C 0.11 1.84 5.92 -2.41 -0.01 1.83 16 19 C -0.08 -1.14 0.73 -153.11 -0.11 -1.25 16 20 C -0.13 -1.95 7.11 37.16 0.26 -1.68 16 21 C 0.17 3.38 4.95 -4.04 -0.02 3.36 16 22 N -0.73 -18.35 4.79 -59.91 -0.29 -18.63 16 23 C -0.24 -6.75 9.99 -15.05 -0.15 -6.90 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 27 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 30 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 31 H 0.06 0.63 6.89 -51.93 -0.36 0.27 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.54 6.69 -51.93 -0.35 0.19 16 34 H 0.07 0.63 7.85 -51.93 -0.41 0.23 16 35 H 0.08 0.61 6.84 -51.93 -0.36 0.26 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.11 1.36 6.98 -51.93 -0.36 1.00 16 38 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.16 0.91 8.06 -52.48 -0.42 0.48 16 41 H 0.09 0.99 7.89 -51.93 -0.41 0.58 16 42 H 0.09 0.76 7.71 -51.93 -0.40 0.36 16 43 H 0.10 2.08 6.94 -51.93 -0.36 1.72 16 44 H 0.07 0.99 7.83 -51.93 -0.41 0.58 16 45 H 0.05 0.61 6.71 -51.93 -0.35 0.26 16 46 H 0.07 1.21 6.74 -51.93 -0.35 0.86 16 47 H 0.06 0.83 6.84 -51.93 -0.36 0.48 16 48 H 0.02 0.35 8.14 -51.94 -0.42 -0.07 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.38 10.08 5.99 -40.82 -0.24 9.84 16 51 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -34.74 396.26 -10.21 -44.95 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -8.02 Total: 7.48 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -3.01 Total: -4.85 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.22 Total: -61.14 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.74 -10.21 -44.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183278776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.164 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds