Wall clock time and date at job start Wed Apr 1 2020 03:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.49572 * 2 1 4 4 C 1.53193 * 109.49858 * 239.90783 * 2 1 3 5 5 N 1.46928 * 108.77166 * 294.68365 * 4 2 1 6 6 C 1.34771 * 120.63098 * 126.37312 * 5 4 2 7 7 O 1.21284 * 119.99955 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00204 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47488 * 174.99866 * 8 6 5 10 10 C 1.53005 * 109.47280 * 294.99849 * 8 6 5 11 11 F 1.39901 * 109.47121 * 54.99994 * 8 6 5 12 12 C 1.46930 * 118.73930 * 306.38893 * 5 4 2 13 13 C 1.53191 * 108.76206 * 53.61946 * 12 5 4 14 14 C 1.53039 * 109.31818 * 305.34456 * 13 12 5 15 15 H 1.09009 * 109.45565 * 301.37569 * 14 13 12 16 16 C 1.52993 * 109.46556 * 181.39984 * 14 13 12 17 17 N 1.46905 * 109.47039 * 64.97144 * 16 14 13 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.46943 * 180.02562 * 18 17 16 20 20 O 1.21292 * 120.00024 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99767 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99759 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00171 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00074 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99768 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00310 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47191 * 60.00175 * 26 24 22 28 28 H 1.48495 * 109.47229 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47299 * 300.00478 * 26 24 22 30 30 H 1.08997 * 109.47414 * 299.93278 * 1 2 3 31 31 H 1.08997 * 109.46630 * 59.93095 * 1 2 3 32 32 H 1.08998 * 109.46838 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.58607 * 54.46575 * 4 2 1 34 34 H 1.09000 * 109.58465 * 174.75308 * 4 2 1 35 35 H 1.09001 * 109.47136 * 59.99637 * 9 8 6 36 36 H 1.08993 * 109.47379 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.46594 * 299.99762 * 9 8 6 38 38 H 1.08996 * 109.46891 * 59.99802 * 10 8 6 39 39 H 1.08993 * 109.47252 * 179.97438 * 10 8 6 40 40 H 1.09001 * 109.46753 * 300.00001 * 10 8 6 41 41 H 1.09002 * 109.58429 * 173.39716 * 12 5 4 42 42 H 1.08994 * 109.58793 * 293.68150 * 12 5 4 43 43 H 1.09001 * 109.48886 * 185.39439 * 13 12 5 44 44 H 1.09005 * 109.50997 * 65.30503 * 13 12 5 45 45 H 1.09001 * 109.47393 * 304.97425 * 16 14 13 46 46 H 1.08998 * 109.47408 * 184.97071 * 16 14 13 47 47 H 1.00901 * 110.99869 * 56.04956 * 17 16 14 48 48 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 49 49 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 50 50 H 0.96997 * 120.00713 * 359.97438 * 21 19 18 51 51 H 0.96999 * 119.99907 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7240 -1.2494 5 7 1.6516 -2.1384 -1.1691 6 6 0.9741 -2.7223 -2.1772 7 8 0.6801 -2.0793 -3.1627 8 6 0.5819 -4.1741 -2.0802 9 6 -0.2778 -4.5521 -3.2881 10 6 1.8415 -5.0424 -2.0589 11 9 -0.1480 -4.3824 -0.9049 12 6 2.0141 -2.9040 0.0315 13 6 1.5028 -2.1553 1.2663 14 6 2.0408 -0.7227 1.2486 15 1 3.1306 -0.7443 1.2354 16 6 1.5606 0.0177 2.4984 17 7 2.1488 -0.6043 3.6922 18 6 1.7085 0.0817 4.9143 19 6 2.3313 -0.5824 6.1152 20 8 3.0689 -1.5339 5.9676 21 7 2.0677 -0.1197 7.3533 22 6 2.6338 -0.7242 8.4459 23 1 3.2907 -1.5714 8.3145 24 6 2.3626 -0.2469 9.7223 25 7 1.5629 0.7836 9.8823 26 14 3.1334 -1.0709 11.2111 27 1 4.6129 -0.9967 11.1073 28 1 2.6880 -0.3777 12.4465 29 1 2.7116 -2.4938 11.2630 30 1 -0.3634 0.5128 0.8905 31 1 -0.3632 0.5149 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6008 -0.2736 -2.1388 34 1 3.1273 -0.6443 -1.2992 35 1 0.2909 -4.3898 -4.2038 36 1 -0.5618 -5.6020 -3.2176 37 1 -1.1751 -3.9335 -3.3032 38 1 2.4539 -4.7731 -1.1984 39 1 1.5578 -6.0924 -1.9882 40 1 2.4101 -4.8801 -2.9746 41 1 1.5554 -3.8918 -0.0129 42 1 3.0978 -3.0064 0.0861 43 1 1.8475 -2.6623 2.1676 44 1 0.4130 -2.1349 1.2543 45 1 0.4737 -0.0374 2.5582 46 1 1.8691 1.0616 2.4432 47 1 3.1558 -0.6238 3.6309 48 1 2.0177 1.1262 4.8762 49 1 0.6226 0.0267 4.9906 50 1 1.4775 0.6409 7.4715 51 1 1.3733 1.1166 10.7734 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183707572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:29 Heat of formation + Delta-G solvation = -145.961619 kcal Electronic energy + Delta-G solvation = -31091.851061 eV Core-core repulsion = 26746.361738 eV Total energy + Delta-G solvation = -4345.489324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.09793 -41.50750 -40.16391 -39.38519 -36.77718 -35.87083 -35.07562 -34.16244 -33.24855 -32.55723 -29.55422 -28.67805 -27.95806 -27.40954 -25.70008 -24.41845 -24.02701 -22.67519 -21.13905 -20.83471 -19.93795 -19.47984 -18.69386 -17.77121 -17.53222 -17.10910 -16.92243 -16.48101 -16.43928 -16.11617 -15.87063 -15.61537 -15.45377 -15.37529 -15.19825 -14.77073 -14.36134 -14.29854 -14.08234 -14.03512 -13.61989 -13.46032 -13.39577 -13.33374 -13.16401 -13.10480 -13.04176 -12.97559 -12.79924 -12.67159 -12.42451 -12.40340 -12.15009 -12.11562 -11.88335 -11.59788 -11.48849 -11.33226 -11.28906 -10.70934 -10.32499 -10.00601 -9.71378 -9.25902 -8.45633 -5.94396 1.28734 1.40624 1.42424 1.53376 1.80973 2.06868 2.29902 2.94045 3.03965 3.21731 3.41365 3.53379 3.55670 3.67842 3.74342 3.80814 3.93679 4.06898 4.22300 4.30520 4.38184 4.40950 4.48817 4.55959 4.56094 4.59335 4.62794 4.64973 4.67385 4.71763 4.76709 4.81300 4.88714 4.94201 4.98727 5.03816 5.07600 5.12007 5.16646 5.20783 5.31733 5.41532 5.47529 5.59784 5.91056 6.12858 6.21793 6.47032 6.61120 6.88884 7.13453 7.57652 8.12632 8.71509 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.021640 B = 0.001967 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.594825 B =14234.091883 C =14928.725793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.099 0.901 4 C 0.113 3.887 5 N -0.591 5.591 6 C 0.496 3.504 7 O -0.563 6.563 8 C 0.098 3.902 9 C -0.155 4.155 10 C -0.179 4.179 11 F -0.201 7.201 12 C 0.092 3.908 13 C -0.119 4.119 14 C -0.071 4.071 15 H 0.080 0.920 16 C 0.067 3.933 17 N -0.677 5.677 18 C 0.065 3.935 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.575 5.575 22 C -0.333 4.333 23 H 0.080 0.920 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.040 0.960 47 H 0.344 0.656 48 H 0.064 0.936 49 H 0.099 0.901 50 H 0.396 0.604 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -4.795 -25.765 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.117 0.883 4 C -0.009 4.009 5 N -0.323 5.323 6 C 0.283 3.717 7 O -0.442 6.442 8 C 0.076 3.924 9 C -0.213 4.213 10 C -0.236 4.236 11 F -0.181 7.181 12 C -0.030 4.030 13 C -0.157 4.157 14 C -0.090 4.090 15 H 0.098 0.902 16 C -0.062 4.062 17 N -0.309 5.309 18 C -0.067 4.067 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.212 5.212 22 C -0.463 4.463 23 H 0.098 0.902 24 C -0.215 4.215 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.059 0.941 47 H 0.163 0.837 48 H 0.082 0.918 49 H 0.117 0.883 50 H 0.230 0.770 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.483 -5.462 -26.118 26.724 hybrid contribution 0.235 1.034 1.172 1.581 sum -1.248 -4.428 -24.945 25.366 Atomic orbital electron populations 1.21841 0.95358 1.01256 1.01672 1.21460 0.96128 1.00125 0.93445 0.88277 1.21777 1.00559 0.79785 0.98771 1.48171 1.54238 1.12017 1.17845 1.21209 0.77786 0.89815 0.82928 1.90685 1.55932 1.65238 1.32379 1.21333 0.94565 0.92444 0.84008 1.22171 0.99746 1.03490 0.95879 1.22629 0.94595 1.00982 1.05369 1.92879 1.79451 1.95790 1.50004 1.22323 1.01514 0.96056 0.83096 1.21816 1.00742 0.95699 0.97442 1.21072 1.00558 0.94677 0.92733 0.90212 1.22092 0.99888 0.95707 0.88489 1.60055 1.14848 1.55701 1.00338 1.21506 1.01003 0.95854 0.88342 1.20882 0.85150 0.86328 0.85026 1.90483 1.42313 1.31521 1.86412 1.41949 1.43675 1.30690 1.04908 1.19633 1.27094 1.14142 0.85411 0.90229 1.26059 0.97238 0.96911 1.01245 1.69671 1.36472 1.25029 1.25036 0.84982 0.78484 0.78178 0.76662 1.19592 1.19608 1.19731 0.91877 0.93105 0.93882 0.90011 0.89489 0.89525 0.88618 0.92315 0.89793 0.88278 0.89123 0.88045 0.89351 0.90366 0.92403 0.90992 0.94145 0.83695 0.91783 0.88280 0.77043 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.38 71.98 0.60 -2.00 16 2 C -0.09 -1.43 2.72 -10.71 -0.03 -1.46 16 3 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 4 C 0.11 1.84 5.83 86.36 0.50 2.34 16 5 N -0.59 -10.58 2.41 -818.91 -1.97 -12.55 16 6 C 0.50 10.34 6.80 87.66 0.60 10.93 16 7 O -0.56 -15.07 15.40 -3.04 -0.05 -15.11 16 8 C 0.10 1.60 1.20 -11.54 -0.01 1.59 16 9 C -0.16 -2.22 8.23 71.98 0.59 -1.63 16 10 C -0.18 -1.86 8.54 71.98 0.61 -1.25 16 11 F -0.20 -3.98 14.76 44.97 0.66 -3.32 16 12 C 0.09 1.49 4.75 86.36 0.41 1.90 16 13 C -0.12 -2.35 4.92 30.67 0.15 -2.20 16 14 C -0.07 -1.27 2.07 -10.77 -0.02 -1.29 16 15 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 16 C 0.07 1.42 4.61 86.30 0.40 1.81 16 17 N -0.68 -19.79 5.56 -517.93 -2.88 -22.67 16 18 C 0.07 2.18 6.17 85.56 0.53 2.71 16 19 C 0.44 20.55 7.82 87.66 0.69 21.24 16 20 O -0.62 -33.71 15.78 -3.07 -0.05 -33.76 16 21 N -0.57 -29.36 5.29 -306.99 -1.62 -30.98 16 22 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 23 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 24 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 25 N -0.92 -49.70 13.05 21.66 0.28 -49.41 16 26 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 30 H 0.06 1.09 6.58 -2.39 -0.02 1.07 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 0.92 5.97 -2.39 -0.01 0.91 16 33 H 0.08 1.56 7.00 -2.39 -0.02 1.54 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.16 8.05 -2.39 -0.02 1.14 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 0.84 5.42 -2.39 -0.01 0.83 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 1.62 3.81 -2.39 -0.01 1.61 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.87 7.72 -2.39 -0.02 1.85 16 44 H 0.06 1.29 6.33 -2.38 -0.02 1.28 16 45 H 0.07 1.57 6.74 -2.39 -0.02 1.55 16 46 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.34 10.47 8.43 -89.69 -0.76 9.71 16 48 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 50 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 51 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -70.00 397.45 2.17 -67.83 By element: Atomic # 1 Polarization: 41.40 SS G_CDS: -0.53 Total: 40.87 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.30 Total: 14.33 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -6.19 Total: -115.62 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.10 Total: -48.88 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.66 Total: -3.32 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -70.00 2.17 -67.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183707572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.132 kcal (2) G-P(sol) polarization free energy of solvation -70.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds