Wall clock time and date at job start Wed Apr 1 2020 03:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.49538 * 2 1 4 4 C 1.52764 * 109.56297 * 240.03110 * 2 1 3 5 5 N 1.46930 * 109.00725 * 185.55279 * 4 2 1 6 6 C 1.34774 * 120.62646 * 233.58561 * 5 4 2 7 7 O 1.21549 * 120.00459 * 5.44616 * 6 5 4 8 8 C 1.47847 * 119.99499 * 185.44829 * 6 5 4 9 9 C 1.40023 * 120.55677 * 48.33026 * 8 6 5 10 10 C 1.38360 * 118.28536 * 180.02562 * 9 8 6 11 11 C 1.38349 * 119.30277 * 359.97438 * 10 9 8 12 12 N 1.31922 * 121.08291 * 359.71884 * 11 10 9 13 13 C 1.31703 * 121.87793 * 0.57498 * 12 11 10 14 14 C 1.50695 * 119.71609 * 179.70877 * 13 12 11 15 15 C 1.53000 * 117.50084 * 65.72507 * 14 13 12 16 16 C 1.52998 * 117.50034 * 357.10147 * 14 13 12 17 17 C 1.46920 * 118.73748 * 53.30567 * 5 4 2 18 18 C 1.53191 * 108.78067 * 306.64058 * 17 5 4 19 19 C 1.53039 * 109.50120 * 120.06457 * 2 1 3 20 20 H 1.09001 * 109.46011 * 61.29128 * 19 2 1 21 21 C 1.53005 * 109.45861 * 301.33946 * 19 2 1 22 22 N 1.46494 * 109.47326 * 174.92949 * 21 19 2 23 23 C 1.36941 * 120.00092 * 179.97438 * 22 21 19 24 24 H 1.07995 * 120.00046 * 0.02562 * 23 22 21 25 25 C 1.38815 * 119.99667 * 180.02562 * 23 22 21 26 26 N 1.31621 * 119.99815 * 179.97438 * 25 23 22 27 27 Si 1.86795 * 120.00198 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47154 * 90.00047 * 27 25 23 29 29 H 1.48504 * 109.47015 * 209.99956 * 27 25 23 30 30 H 1.48497 * 109.47433 * 330.00022 * 27 25 23 31 31 H 1.09003 * 109.46601 * 299.93614 * 1 2 3 32 32 H 1.08998 * 109.47189 * 59.93740 * 1 2 3 33 33 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.51127 * 65.67043 * 4 2 1 35 35 H 1.08993 * 109.43143 * 305.38583 * 4 2 1 36 36 H 1.07998 * 120.86002 * 359.97438 * 9 8 6 37 37 H 1.08000 * 120.34425 * 179.97438 * 10 9 8 38 38 H 1.08011 * 119.45870 * 180.02562 * 11 10 9 39 39 H 1.09005 * 115.55555 * 211.41528 * 14 13 12 40 40 H 1.09003 * 117.49425 * 145.02170 * 15 14 13 41 41 H 1.09001 * 117.49849 * 359.97438 * 15 14 13 42 42 H 1.08994 * 117.50056 * 0.02562 * 16 14 13 43 43 H 1.09001 * 117.51943 * 214.97130 * 16 14 13 44 44 H 1.08998 * 109.58669 * 66.43517 * 17 5 4 45 45 H 1.09004 * 109.58554 * 186.71577 * 17 5 4 46 46 H 1.08999 * 109.50104 * 174.58277 * 18 17 5 47 47 H 1.08996 * 109.49947 * 294.65884 * 18 17 5 48 48 H 1.09008 * 109.46753 * 294.92784 * 21 19 2 49 49 H 1.08999 * 109.47324 * 54.92710 * 21 19 2 50 50 H 0.97003 * 120.00016 * 0.02562 * 22 21 19 51 51 H 0.96998 * 120.00037 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0416 -0.7191 -1.2470 5 7 3.5046 -0.8295 -1.1694 6 6 4.2811 -0.3862 -2.1779 7 8 3.7806 0.1994 -3.1181 8 6 5.7417 -0.6122 -2.1404 9 6 6.2586 -1.8801 -1.8476 10 6 7.6329 -2.0386 -1.8245 11 6 8.4446 -0.9500 -2.0895 12 7 7.9292 0.2319 -2.3683 13 6 6.6282 0.4343 -2.3968 14 6 6.0924 1.8064 -2.7147 15 6 6.3445 2.3551 -4.1204 16 6 7.1088 2.9302 -2.9263 17 6 4.1053 -1.4266 0.0311 18 6 3.5710 -0.6946 1.2662 19 6 2.0409 -0.7227 1.2485 20 1 1.6968 -1.7569 1.2358 21 6 1.5038 -0.0225 2.4984 22 7 1.8918 -0.7828 3.6889 23 6 1.5209 -0.3446 4.9322 24 1 0.9421 0.5612 5.0350 25 6 1.8891 -1.0649 6.0603 26 7 1.5331 -0.6435 7.2553 27 14 2.8909 -2.6314 5.8825 28 1 4.3381 -2.3011 5.9257 29 1 2.5614 -3.5587 6.9947 30 1 2.5698 -3.2800 4.5858 31 1 -0.3632 0.5129 0.8906 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7646 -0.1502 -2.1346 35 1 1.6021 -1.7152 -1.2970 36 1 5.6015 -2.7127 -1.6442 37 1 8.0674 -3.0020 -1.6021 38 1 9.5177 -1.0710 -2.0726 39 1 5.1483 2.0653 -2.2351 40 1 5.5663 2.9751 -4.5657 41 1 6.8983 1.7238 -4.8153 42 1 8.1651 2.6770 -2.8360 43 1 6.8338 3.9286 -2.5863 44 1 3.8376 -2.4817 0.0874 45 1 5.1898 -1.3268 -0.0146 46 1 3.9335 -1.1890 2.1674 47 1 3.9164 0.3391 1.2542 48 1 1.9195 0.9834 2.5583 49 1 0.4168 0.0363 2.4431 50 1 2.4120 -1.5963 3.5966 51 1 1.7900 -1.1470 8.0436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184745462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:37 Heat of formation + Delta-G solvation = 38.643337 kcal Electronic energy + Delta-G solvation = -30663.122385 eV Core-core repulsion = 26756.407357 eV Total energy + Delta-G solvation = -3906.715028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.29573 -39.84036 -38.07136 -37.09999 -35.21779 -33.95416 -32.69921 -32.08706 -31.49100 -30.73035 -27.30268 -27.06680 -24.92912 -24.74360 -23.42187 -22.57564 -22.44485 -21.33173 -21.06943 -20.31683 -19.49963 -17.76178 -17.40890 -17.36879 -16.58367 -16.31878 -15.53529 -15.18447 -14.91767 -14.68544 -14.55341 -14.30342 -14.22972 -14.05301 -13.67421 -13.47920 -13.34596 -13.14711 -12.92126 -12.87756 -12.49384 -12.05610 -11.98801 -11.93322 -11.77598 -11.65383 -11.36547 -11.06370 -11.00862 -10.92370 -10.66388 -10.54491 -10.50151 -10.35852 -10.18479 -10.13150 -9.97063 -9.66042 -9.60631 -9.16370 -8.91752 -8.74684 -7.24218 -5.79110 -3.14321 0.43879 0.80741 2.44530 2.75523 3.27446 3.32490 3.34173 3.41304 3.76954 3.85721 4.10342 4.31718 4.42013 4.55701 4.64233 4.65694 4.73992 4.79112 4.83825 4.89880 4.92433 4.94022 5.05081 5.15319 5.26220 5.29148 5.35853 5.50814 5.51279 5.56632 5.61768 5.65112 5.65759 5.68424 5.71228 5.73501 5.76167 5.86235 5.92465 6.03783 6.08335 6.13433 6.17120 6.22770 6.30938 6.34705 6.41275 6.70640 6.78467 7.15865 7.57263 7.91514 7.97691 8.40086 9.19195 9.91429 10.11365 11.39581 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.003000 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.596280 B = 9330.578838 C =10276.394267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.075 0.925 4 C 0.118 3.882 5 N -0.601 5.601 6 C 0.566 3.434 7 O -0.527 6.527 8 C -0.173 4.173 9 C -0.042 4.042 10 C -0.184 4.184 11 C 0.123 3.877 12 N -0.484 5.484 13 C 0.211 3.789 14 C -0.116 4.116 15 C -0.148 4.148 16 C -0.160 4.160 17 C 0.100 3.900 18 C -0.127 4.127 19 C -0.093 4.093 20 H 0.072 0.928 21 C 0.161 3.839 22 N -0.755 5.755 23 C -0.242 4.242 24 H 0.089 0.911 25 C 0.003 3.997 26 N -0.935 5.935 27 Si 0.883 3.117 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.161 0.839 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.025 0.975 49 H 0.033 0.967 50 H 0.359 0.641 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.896 -1.617 -23.598 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.004 4.004 5 N -0.334 5.334 6 C 0.353 3.647 7 O -0.404 6.404 8 C -0.178 4.178 9 C -0.068 4.068 10 C -0.204 4.204 11 C -0.035 4.035 12 N -0.192 5.192 13 C 0.073 3.927 14 C -0.135 4.135 15 C -0.185 4.185 16 C -0.198 4.198 17 C -0.022 4.022 18 C -0.165 4.165 19 C -0.112 4.112 20 H 0.090 0.910 21 C 0.034 3.966 22 N -0.401 5.401 23 C -0.372 4.372 24 H 0.107 0.893 25 C -0.192 4.192 26 N -0.583 5.583 27 Si 0.714 3.286 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.179 0.821 39 H 0.138 0.862 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.043 0.957 49 H 0.051 0.949 50 H 0.192 0.808 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.073 -0.478 -24.091 26.519 hybrid contribution 0.183 -2.143 0.503 2.209 sum 11.256 -2.622 -23.588 26.268 Atomic orbital electron populations 1.21838 0.94092 1.02247 1.02338 1.21369 0.96328 1.00086 0.93854 0.90658 1.21665 0.78155 1.01061 0.99505 1.48056 1.07121 1.60387 1.17829 1.18063 0.85653 0.78498 0.82454 1.90785 1.74577 1.40806 1.34266 1.20657 0.94687 0.95601 1.06829 1.21778 0.95915 0.96108 0.92999 1.22097 0.93850 1.01156 1.03307 1.22948 1.00785 0.87494 0.92247 1.67452 1.13228 1.24445 1.14097 1.20395 0.87862 0.93653 0.90808 1.20874 1.00649 0.89629 1.02359 1.22860 1.02810 1.02774 0.90079 1.22997 0.98369 0.96672 1.01717 1.22032 0.98379 0.97392 0.84429 1.21947 0.96239 1.01508 0.96831 1.21402 0.94516 1.00279 0.95002 0.90972 1.20737 0.97259 0.94112 0.84520 1.42727 1.66360 1.28389 1.02628 1.19066 1.28512 1.07782 0.81880 0.89274 1.24676 1.00765 0.98674 0.95123 1.69700 1.50965 1.40583 0.97043 0.86562 0.80620 0.84526 0.76918 1.21082 1.21720 1.20383 0.91110 0.92808 0.92498 0.88907 0.91329 0.84110 0.83990 0.82147 0.86173 0.88185 0.88901 0.87396 0.88511 0.91059 0.89835 0.89930 0.91276 0.95672 0.94918 0.80787 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.82 37.16 0.33 -1.31 16 2 C -0.10 -1.16 2.40 -90.72 -0.22 -1.37 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.32 5.70 -3.93 -0.02 1.30 16 5 N -0.60 -6.95 2.98 -174.15 -0.52 -7.47 16 6 C 0.57 7.27 6.49 -12.33 -0.08 7.19 16 7 O -0.53 -8.10 15.13 5.32 0.08 -8.02 16 8 C -0.17 -1.98 4.83 -104.82 -0.51 -2.49 16 9 C -0.04 -0.37 7.70 -38.87 -0.30 -0.67 16 10 C -0.18 -1.36 10.10 -39.50 -0.40 -1.76 16 11 C 0.12 1.02 11.17 -17.47 -0.20 0.83 16 12 N -0.48 -5.33 9.28 -9.14 -0.08 -5.42 16 13 C 0.21 2.52 6.49 -82.17 -0.53 1.98 16 14 C -0.12 -1.35 4.81 -91.78 -0.44 -1.79 16 15 C -0.15 -1.50 10.23 -26.73 -0.27 -1.77 16 16 C -0.16 -1.56 10.02 -26.73 -0.27 -1.83 16 17 C 0.10 1.07 5.31 -3.71 -0.02 1.05 16 18 C -0.13 -1.69 5.25 -26.61 -0.14 -1.83 16 19 C -0.09 -1.31 1.73 -90.57 -0.16 -1.46 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 21 C 0.16 2.95 5.41 -4.04 -0.02 2.93 16 22 N -0.76 -17.32 5.12 -59.91 -0.31 -17.63 16 23 C -0.24 -6.78 10.47 -15.06 -0.16 -6.94 16 24 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 25 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 26 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 27 Si 0.88 21.61 27.74 -169.99 -4.71 16.89 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 31 H 0.07 0.87 6.29 -51.93 -0.33 0.54 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.10 7.00 -51.93 -0.36 0.74 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.14 1.01 7.40 -52.49 -0.39 0.62 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.12 1.51 7.22 -51.93 -0.37 1.14 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.11 1.07 7.54 -51.93 -0.39 0.68 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.83 5.13 -51.93 -0.27 0.57 16 46 H 0.08 1.20 7.15 -51.93 -0.37 0.83 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 49 H 0.03 0.61 6.14 -51.93 -0.32 0.30 16 50 H 0.36 7.95 4.71 -40.82 -0.19 7.76 16 51 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -33.50 398.01 -10.35 -43.85 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -8.08 Total: 8.18 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.50 Total: -7.93 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.14 Total: -58.97 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.50 -10.35 -43.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184745462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.495 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds