Wall clock time and date at job start Wed Apr 1 2020 03:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.49538 * 2 1 4 4 C 1.52764 * 109.56297 * 240.03110 * 2 1 3 5 5 N 1.46930 * 109.00725 * 185.55279 * 4 2 1 6 6 C 1.34774 * 120.62646 * 233.58561 * 5 4 2 7 7 O 1.21549 * 120.00459 * 5.44616 * 6 5 4 8 8 C 1.47847 * 119.99499 * 185.44829 * 6 5 4 9 9 C 1.40023 * 120.55677 * 48.33026 * 8 6 5 10 10 C 1.38360 * 118.28536 * 180.02562 * 9 8 6 11 11 C 1.38349 * 119.30277 * 359.97438 * 10 9 8 12 12 N 1.31922 * 121.08291 * 359.71884 * 11 10 9 13 13 C 1.31703 * 121.87793 * 0.57498 * 12 11 10 14 14 C 1.50695 * 119.71609 * 179.70877 * 13 12 11 15 15 C 1.53000 * 117.50084 * 65.72507 * 14 13 12 16 16 C 1.52998 * 117.50034 * 357.10147 * 14 13 12 17 17 C 1.46920 * 118.73748 * 53.30567 * 5 4 2 18 18 C 1.53191 * 108.78067 * 306.64058 * 17 5 4 19 19 C 1.53039 * 109.50120 * 120.06457 * 2 1 3 20 20 H 1.09001 * 109.46011 * 61.29128 * 19 2 1 21 21 C 1.53005 * 109.45861 * 301.33946 * 19 2 1 22 22 N 1.46494 * 109.47326 * 174.92949 * 21 19 2 23 23 C 1.36941 * 120.00092 * 179.97438 * 22 21 19 24 24 H 1.07995 * 120.00046 * 0.02562 * 23 22 21 25 25 C 1.38815 * 119.99667 * 180.02562 * 23 22 21 26 26 N 1.31621 * 119.99815 * 179.97438 * 25 23 22 27 27 Si 1.86795 * 120.00198 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47154 * 90.00047 * 27 25 23 29 29 H 1.48504 * 109.47015 * 209.99956 * 27 25 23 30 30 H 1.48497 * 109.47433 * 330.00022 * 27 25 23 31 31 H 1.09003 * 109.46601 * 299.93614 * 1 2 3 32 32 H 1.08998 * 109.47189 * 59.93740 * 1 2 3 33 33 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.51127 * 65.67043 * 4 2 1 35 35 H 1.08993 * 109.43143 * 305.38583 * 4 2 1 36 36 H 1.07998 * 120.86002 * 359.97438 * 9 8 6 37 37 H 1.08000 * 120.34425 * 179.97438 * 10 9 8 38 38 H 1.08011 * 119.45870 * 180.02562 * 11 10 9 39 39 H 1.09005 * 115.55555 * 211.41528 * 14 13 12 40 40 H 1.09003 * 117.49425 * 145.02170 * 15 14 13 41 41 H 1.09001 * 117.49849 * 359.97438 * 15 14 13 42 42 H 1.08994 * 117.50056 * 0.02562 * 16 14 13 43 43 H 1.09001 * 117.51943 * 214.97130 * 16 14 13 44 44 H 1.08998 * 109.58669 * 66.43517 * 17 5 4 45 45 H 1.09004 * 109.58554 * 186.71577 * 17 5 4 46 46 H 1.08999 * 109.50104 * 174.58277 * 18 17 5 47 47 H 1.08996 * 109.49947 * 294.65884 * 18 17 5 48 48 H 1.09008 * 109.46753 * 294.92784 * 21 19 2 49 49 H 1.08999 * 109.47324 * 54.92710 * 21 19 2 50 50 H 0.97003 * 120.00016 * 0.02562 * 22 21 19 51 51 H 0.96998 * 120.00037 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0416 -0.7191 -1.2470 5 7 3.5046 -0.8295 -1.1694 6 6 4.2811 -0.3862 -2.1779 7 8 3.7806 0.1994 -3.1181 8 6 5.7417 -0.6122 -2.1404 9 6 6.2586 -1.8801 -1.8476 10 6 7.6329 -2.0386 -1.8245 11 6 8.4446 -0.9500 -2.0895 12 7 7.9292 0.2319 -2.3683 13 6 6.6282 0.4343 -2.3968 14 6 6.0924 1.8064 -2.7147 15 6 6.3445 2.3551 -4.1204 16 6 7.1088 2.9302 -2.9263 17 6 4.1053 -1.4266 0.0311 18 6 3.5710 -0.6946 1.2662 19 6 2.0409 -0.7227 1.2485 20 1 1.6968 -1.7569 1.2358 21 6 1.5038 -0.0225 2.4984 22 7 1.8918 -0.7828 3.6889 23 6 1.5209 -0.3446 4.9322 24 1 0.9421 0.5612 5.0350 25 6 1.8891 -1.0649 6.0603 26 7 1.5331 -0.6435 7.2553 27 14 2.8909 -2.6314 5.8825 28 1 4.3381 -2.3011 5.9257 29 1 2.5614 -3.5587 6.9947 30 1 2.5698 -3.2800 4.5858 31 1 -0.3632 0.5129 0.8906 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7646 -0.1502 -2.1346 35 1 1.6021 -1.7152 -1.2970 36 1 5.6015 -2.7127 -1.6442 37 1 8.0674 -3.0020 -1.6021 38 1 9.5177 -1.0710 -2.0726 39 1 5.1483 2.0653 -2.2351 40 1 5.5663 2.9751 -4.5657 41 1 6.8983 1.7238 -4.8153 42 1 8.1651 2.6770 -2.8360 43 1 6.8338 3.9286 -2.5863 44 1 3.8376 -2.4817 0.0874 45 1 5.1898 -1.3268 -0.0146 46 1 3.9335 -1.1890 2.1674 47 1 3.9164 0.3391 1.2542 48 1 1.9195 0.9834 2.5583 49 1 0.4168 0.0363 2.4431 50 1 2.4120 -1.5963 3.5966 51 1 1.7900 -1.1470 8.0436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184745462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:35 Heat of formation + Delta-G solvation = 18.706780 kcal Electronic energy + Delta-G solvation = -30663.986899 eV Core-core repulsion = 26756.407357 eV Total energy + Delta-G solvation = -3907.579542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.10583 -40.72555 -39.15296 -37.88197 -36.70088 -35.20724 -33.82861 -33.27552 -32.37381 -32.19329 -28.72381 -27.95714 -25.85824 -25.61571 -24.80836 -23.71430 -23.24345 -22.71805 -21.88750 -21.37042 -20.48890 -19.62957 -18.37608 -18.13924 -17.40710 -17.18068 -16.67967 -16.29815 -16.16024 -15.84635 -15.58981 -15.55361 -15.17211 -15.01179 -14.82020 -14.60598 -14.42618 -14.35975 -14.03632 -13.98571 -13.64011 -13.26397 -13.15876 -12.95498 -12.85644 -12.73641 -12.71472 -12.42437 -12.17964 -12.02084 -11.85592 -11.81984 -11.67030 -11.50858 -11.44406 -11.26939 -11.20893 -10.95933 -10.74967 -10.44446 -9.89385 -9.68746 -9.27501 -8.02168 -5.35911 -0.27354 0.14948 1.37165 1.42828 1.50317 1.53222 1.89024 2.49605 2.55928 3.02074 3.13085 3.28907 3.29194 3.51556 3.58640 3.69238 3.79952 3.84960 3.92001 3.94515 4.02886 4.11320 4.11779 4.18062 4.24846 4.33727 4.43491 4.49423 4.57911 4.60181 4.65224 4.70808 4.72440 4.76804 4.80278 4.92979 4.95894 4.98638 5.03265 5.05317 5.06699 5.11692 5.17943 5.22612 5.25813 5.33894 5.45124 5.55210 5.61141 5.76234 6.21525 6.24522 6.88317 6.98923 7.08894 7.84271 8.05402 9.19761 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.003000 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.596280 B = 9330.578838 C =10276.394267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.060 0.940 4 C 0.122 3.878 5 N -0.599 5.599 6 C 0.566 3.434 7 O -0.562 6.562 8 C -0.193 4.193 9 C -0.043 4.043 10 C -0.172 4.172 11 C 0.117 3.883 12 N -0.504 5.504 13 C 0.190 3.810 14 C -0.133 4.133 15 C -0.145 4.145 16 C -0.149 4.149 17 C 0.107 3.893 18 C -0.126 4.126 19 C -0.082 4.082 20 H 0.084 0.916 21 C 0.159 3.841 22 N -0.754 5.754 23 C -0.236 4.236 24 H 0.050 0.950 25 C -0.067 4.067 26 N -0.987 5.987 27 Si 0.957 3.043 28 H -0.276 1.276 29 H -0.297 1.297 30 H -0.244 1.244 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.162 0.838 37 H 0.179 0.821 38 H 0.192 0.808 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.011 0.989 49 H 0.031 0.969 50 H 0.368 0.632 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.799 -4.667 -25.331 28.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.078 0.922 4 C 0.000 4.000 5 N -0.331 5.331 6 C 0.354 3.646 7 O -0.441 6.441 8 C -0.199 4.199 9 C -0.069 4.069 10 C -0.191 4.191 11 C -0.040 4.040 12 N -0.213 5.213 13 C 0.053 3.947 14 C -0.152 4.152 15 C -0.183 4.183 16 C -0.186 4.186 17 C -0.015 4.015 18 C -0.164 4.164 19 C -0.100 4.100 20 H 0.102 0.898 21 C 0.033 3.967 22 N -0.400 5.400 23 C -0.367 4.367 24 H 0.068 0.932 25 C -0.258 4.258 26 N -0.638 5.638 27 Si 0.784 3.216 28 H -0.202 1.202 29 H -0.224 1.224 30 H -0.168 1.168 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.180 0.820 37 H 0.197 0.803 38 H 0.209 0.791 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.029 0.971 49 H 0.049 0.951 50 H 0.202 0.798 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.973 -3.525 -25.871 29.155 hybrid contribution -0.426 -1.084 1.053 1.570 sum 12.547 -4.609 -24.818 28.189 Atomic orbital electron populations 1.21807 0.93299 1.02904 1.02237 1.21267 0.96932 0.99158 0.93431 0.92164 1.21646 0.78193 1.01856 0.98318 1.48100 1.07172 1.60017 1.17796 1.18333 0.86384 0.77747 0.82113 1.90757 1.75343 1.42333 1.35684 1.20640 0.93627 0.96889 1.08702 1.22080 0.97079 0.95423 0.92294 1.22500 0.93047 1.02303 1.01224 1.23587 1.02503 0.86957 0.90988 1.67452 1.12734 1.26107 1.14974 1.20427 0.88558 0.93766 0.91972 1.20841 1.00463 0.90765 1.03160 1.22872 1.02947 1.02695 0.89785 1.23011 0.97918 0.96650 1.00990 1.22063 0.98859 0.98106 0.82449 1.21897 0.95508 1.01002 0.98006 1.21293 0.95097 1.00346 0.93309 0.89820 1.20871 0.97226 0.93564 0.85065 1.42666 1.66281 1.28961 1.02074 1.19023 1.27165 1.06333 0.84194 0.93180 1.25587 1.02722 1.03028 0.94508 1.69905 1.53127 1.42631 0.98116 0.85373 0.78746 0.79412 0.78092 1.20155 1.22415 1.16788 0.92783 0.91365 0.91429 0.89642 0.89246 0.82048 0.80326 0.79147 0.88121 0.87697 0.89109 0.87489 0.87446 0.88412 0.88809 0.90749 0.92871 0.97127 0.95101 0.79850 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.82 71.98 0.63 -2.40 16 2 C -0.09 -2.01 2.40 -10.86 -0.03 -2.04 16 3 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 4 C 0.12 2.50 5.70 86.22 0.49 2.99 16 5 N -0.60 -12.74 2.98 -823.16 -2.45 -15.19 16 6 C 0.57 14.08 6.49 86.79 0.56 14.64 16 7 O -0.56 -17.41 15.13 -3.87 -0.06 -17.47 16 8 C -0.19 -4.18 4.83 -19.99 -0.10 -4.28 16 9 C -0.04 -0.62 7.70 22.73 0.17 -0.45 16 10 C -0.17 -1.84 10.10 22.33 0.23 -1.61 16 11 C 0.12 1.60 11.17 84.71 0.95 2.54 16 12 N -0.50 -10.41 9.28 -182.84 -1.70 -12.11 16 13 C 0.19 4.45 6.49 42.89 0.28 4.73 16 14 C -0.13 -3.18 4.81 -11.54 -0.06 -3.23 16 15 C -0.15 -3.00 10.23 30.59 0.31 -2.68 16 16 C -0.15 -2.90 10.02 30.59 0.31 -2.59 16 17 C 0.11 1.97 5.31 86.36 0.46 2.43 16 18 C -0.13 -3.12 5.25 30.67 0.16 -2.96 16 19 C -0.08 -2.16 1.73 -10.76 -0.02 -2.17 16 20 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 21 C 0.16 5.83 5.41 86.38 0.47 6.29 16 22 N -0.75 -34.05 5.12 -343.45 -1.76 -35.81 16 23 C -0.24 -13.45 10.47 84.03 0.88 -12.57 16 24 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 25 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 26 N -0.99 -63.36 13.97 21.65 0.30 -63.06 16 27 Si 0.96 43.89 27.74 68.60 1.90 45.79 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 29 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 30 H -0.24 -9.71 6.52 99.48 0.65 -9.06 16 31 H 0.05 1.31 6.29 -2.39 -0.02 1.30 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.94 7.00 -2.39 -0.02 1.92 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.16 1.60 7.40 -2.91 -0.02 1.58 16 37 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 38 H 0.19 1.28 8.06 -2.90 -0.02 1.25 16 39 H 0.10 2.71 7.22 -2.38 -0.02 2.70 16 40 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.11 2.10 7.54 -2.39 -0.02 2.08 16 43 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 1.58 5.13 -2.38 -0.01 1.57 16 46 H 0.07 1.99 7.15 -2.39 -0.02 1.97 16 47 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 48 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 49 H 0.03 1.16 6.14 -2.39 -0.01 1.15 16 50 H 0.37 15.36 4.71 -92.71 -0.44 14.92 16 51 H 0.26 15.71 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -75.85 398.01 2.85 -73.00 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.44 Total: 31.69 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 6.17 Total: -6.84 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -5.61 Total: -126.18 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.06 Total: -17.47 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.90 Total: 45.79 kcal Total: -75.85 2.85 -73.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184745462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.706 kcal (2) G-P(sol) polarization free energy of solvation -75.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds