Wall clock time and date at job start Wed Apr 1 2020 03:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.49694 * 2 1 4 4 C 1.53188 * 109.49800 * 120.06430 * 2 1 3 5 5 N 1.46927 * 108.77251 * 65.31831 * 4 2 1 6 6 C 1.34782 * 120.62872 * 233.58164 * 5 4 2 7 7 O 1.21553 * 120.00103 * 355.99742 * 6 5 4 8 8 C 1.47838 * 119.99784 * 175.99476 * 6 5 4 9 9 C 1.40019 * 120.56025 * 54.54116 * 8 6 5 10 10 C 1.38361 * 118.28828 * 179.97438 * 9 8 6 11 11 C 1.38351 * 119.30567 * 359.97438 * 10 9 8 12 12 N 1.31930 * 121.07753 * 0.02562 * 11 10 9 13 13 C 1.31691 * 121.87946 * 359.68258 * 12 11 10 14 14 C 1.50704 * 119.71915 * 180.28754 * 13 12 11 15 15 C 1.52994 * 117.49760 * 13.70891 * 14 13 12 16 16 C 1.52993 * 117.49928 * 305.04623 * 14 13 12 17 17 C 1.46923 * 118.74042 * 53.60781 * 5 4 2 18 18 C 1.53194 * 108.77660 * 306.38934 * 17 5 4 19 19 C 1.53037 * 109.33999 * 54.61809 * 18 17 5 20 20 H 1.09009 * 109.45877 * 58.67093 * 19 18 17 21 21 C 1.52989 * 109.46216 * 178.63324 * 19 18 17 22 22 N 1.46503 * 109.47009 * 294.99925 * 21 19 18 23 23 C 1.36944 * 119.99913 * 180.02562 * 22 21 19 24 24 H 1.07996 * 119.99808 * 0.02562 * 23 22 21 25 25 C 1.38809 * 119.99558 * 180.02562 * 23 22 21 26 26 N 1.31620 * 120.00603 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99628 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47451 * 0.02562 * 27 25 23 29 29 H 1.48510 * 109.47107 * 120.00200 * 27 25 23 30 30 H 1.48496 * 109.47346 * 239.99944 * 27 25 23 31 31 H 1.09003 * 109.46839 * 299.93601 * 1 2 3 32 32 H 1.08996 * 109.47495 * 59.93377 * 1 2 3 33 33 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58991 * 305.53357 * 4 2 1 35 35 H 1.09000 * 109.58347 * 185.09855 * 4 2 1 36 36 H 1.08000 * 120.85934 * 359.95235 * 9 8 6 37 37 H 1.07997 * 120.34817 * 180.02562 * 10 9 8 38 38 H 1.07997 * 119.46572 * 179.97438 * 11 10 9 39 39 H 1.09002 * 115.55204 * 159.37162 * 14 13 12 40 40 H 1.09004 * 117.49938 * 359.97438 * 15 14 13 41 41 H 1.08992 * 117.50572 * 145.01781 * 15 14 13 42 42 H 1.09006 * 117.50121 * 214.97583 * 16 14 13 43 43 H 1.09005 * 117.49723 * 359.97438 * 16 14 13 44 44 H 1.09006 * 109.58489 * 186.60426 * 17 5 4 45 45 H 1.08996 * 109.58969 * 66.18213 * 17 5 4 46 46 H 1.08994 * 109.49801 * 174.58845 * 18 17 5 47 47 H 1.08999 * 109.49326 * 294.65224 * 18 17 5 48 48 H 1.08993 * 109.47286 * 55.00133 * 21 19 18 49 49 H 1.08999 * 109.47297 * 175.00512 * 21 19 18 50 50 H 0.96997 * 120.00330 * 0.02562 * 22 21 19 51 51 H 0.96996 * 120.00013 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 1.6516 -2.1378 1.1701 6 6 0.9748 -2.7215 2.1790 7 8 0.7448 -2.0984 3.1971 8 6 0.5123 -4.1195 2.0474 9 6 1.4152 -5.1410 1.7284 10 6 0.9315 -6.4326 1.6175 11 6 -0.4155 -6.6713 1.8239 12 7 -1.2432 -5.6887 2.1235 13 6 -0.8301 -4.4442 2.2458 14 6 -1.8170 -3.3604 2.5960 15 6 -3.1920 -3.7952 3.1069 16 6 -3.0479 -3.2094 1.7000 17 6 2.0140 -2.9039 -0.0300 18 6 1.5030 -2.1561 -1.2655 19 6 2.0400 -0.7231 -1.2487 20 1 3.1299 -0.7439 -1.2359 21 6 1.5592 0.0162 -2.4988 22 7 2.1465 -0.6040 -3.6891 23 6 1.8580 -0.1082 -4.9325 24 1 1.1979 0.7403 -5.0357 25 6 2.4141 -0.6962 -6.0603 26 7 3.2191 -1.7299 -5.9345 27 14 2.0200 -0.0203 -7.7565 28 1 1.0979 1.1365 -7.6266 29 1 3.2748 0.4195 -8.4180 30 1 1.3746 -1.0790 -8.5736 31 1 -0.3633 0.5129 0.8906 32 1 -0.3634 0.5148 -0.8893 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6007 -0.2726 2.1390 35 1 3.1275 -0.6459 1.2981 36 1 2.4621 -4.9263 1.5724 37 1 1.5987 -7.2460 1.3732 38 1 -0.7958 -7.6784 1.7376 39 1 -1.3874 -2.4520 3.0183 40 1 -3.3830 -4.8653 3.1893 41 1 -3.6672 -3.1728 3.8649 42 1 -3.4284 -2.2017 1.5332 43 1 -3.1437 -3.8937 0.8570 44 1 1.5554 -3.8918 0.0148 45 1 3.0979 -3.0043 -0.0860 46 1 1.8480 -2.6633 -2.1664 47 1 0.4132 -2.1363 -1.2538 48 1 0.4724 -0.0400 -2.5586 49 1 1.8666 1.0605 -2.4441 50 1 2.7398 -1.3658 -3.5964 51 1 3.6073 -2.1409 -6.7226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184745464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:47 Heat of formation + Delta-G solvation = 36.795125 kcal Electronic energy + Delta-G solvation = -31003.568895 eV Core-core repulsion = 27096.773723 eV Total energy + Delta-G solvation = -3906.795172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.26069 -39.83532 -38.01814 -37.05434 -35.02134 -33.73002 -32.61204 -31.77639 -31.33797 -30.35297 -27.11043 -26.94748 -24.90159 -24.63137 -23.50027 -23.02944 -22.46758 -21.51720 -21.00110 -20.25877 -18.48512 -17.65873 -17.33085 -16.98634 -16.50038 -16.13025 -15.40098 -15.35830 -15.01785 -14.60128 -14.38471 -14.15829 -14.06057 -13.93102 -13.75928 -13.47594 -13.44837 -12.95949 -12.88476 -12.54018 -12.47229 -12.25486 -11.86802 -11.63021 -11.60465 -11.43387 -11.08705 -11.01275 -10.95184 -10.80249 -10.62924 -10.37821 -10.32407 -10.28177 -10.18471 -9.99871 -9.87559 -9.66376 -9.57372 -9.05670 -8.88394 -8.64820 -6.92636 -5.79101 -3.06882 0.54166 0.88343 2.47815 2.86003 3.30413 3.41446 3.47616 3.49428 3.84402 3.94983 4.17577 4.34525 4.50394 4.56848 4.73998 4.77713 4.83693 4.90124 4.92813 4.98089 4.99065 5.10081 5.14665 5.22055 5.36315 5.43239 5.51430 5.53570 5.58781 5.67890 5.70247 5.73750 5.75218 5.77031 5.82079 5.84270 6.01757 6.03272 6.05911 6.07603 6.18163 6.26880 6.30224 6.35803 6.44669 6.45501 6.63640 6.79027 6.92119 7.25433 7.64807 7.69063 7.98437 8.40433 9.51733 10.09916 10.44408 11.43983 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.002844 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.334548 B = 9842.449397 C =10243.634428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.083 0.917 4 C 0.117 3.883 5 N -0.594 5.594 6 C 0.570 3.430 7 O -0.537 6.537 8 C -0.171 4.171 9 C -0.043 4.043 10 C -0.183 4.183 11 C 0.121 3.879 12 N -0.485 5.485 13 C 0.210 3.790 14 C -0.132 4.132 15 C -0.154 4.154 16 C -0.157 4.157 17 C 0.098 3.902 18 C -0.126 4.126 19 C -0.088 4.088 20 H 0.071 0.929 21 C 0.159 3.841 22 N -0.732 5.732 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.015 4.015 26 N -0.934 5.934 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.161 0.839 39 H 0.135 0.865 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.021 0.979 49 H 0.018 0.982 50 H 0.383 0.617 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 -7.528 19.315 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.005 4.005 5 N -0.326 5.326 6 C 0.357 3.643 7 O -0.415 6.415 8 C -0.176 4.176 9 C -0.069 4.069 10 C -0.203 4.203 11 C -0.036 4.036 12 N -0.193 5.193 13 C 0.072 3.928 14 C -0.150 4.150 15 C -0.191 4.191 16 C -0.194 4.194 17 C -0.024 4.024 18 C -0.164 4.164 19 C -0.107 4.107 20 H 0.090 0.910 21 C 0.031 3.969 22 N -0.376 5.376 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.583 5.583 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.178 0.822 39 H 0.152 0.848 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.087 0.913 48 H 0.039 0.961 49 H 0.035 0.965 50 H 0.217 0.783 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.991 -7.265 19.840 22.255 hybrid contribution 1.178 0.110 -1.332 1.781 sum -5.814 -7.155 18.508 20.677 Atomic orbital electron populations 1.21869 0.94861 1.02035 1.01501 1.21479 0.96726 0.99501 0.94097 0.89888 1.21735 0.99595 0.79754 0.99373 1.48038 1.54993 1.11759 1.17845 1.18032 0.77415 0.85714 0.83133 1.90750 1.57220 1.64739 1.28782 1.20630 0.95526 0.94890 1.06552 1.21749 0.99967 0.92176 0.93015 1.22086 0.97498 0.97452 1.03245 1.22920 0.89917 0.98296 0.92474 1.67429 1.38756 0.99636 1.13498 1.20339 0.90208 0.91156 0.91075 1.21255 0.88476 0.98510 1.06796 1.22935 0.96904 1.02394 0.96907 1.22971 0.99172 1.02655 0.94612 1.22092 1.00471 0.95411 0.84447 1.21958 1.01445 0.96045 0.96996 1.21304 1.00248 0.94600 0.94559 0.91021 1.20706 0.95915 0.94644 0.85625 1.42388 1.56756 1.37620 1.00875 1.19275 1.22897 1.10778 0.83831 0.91235 1.24715 1.00112 0.98403 0.97798 1.69657 1.35772 1.24478 1.28423 0.86139 0.77423 0.78018 0.84762 1.20581 1.21903 1.21891 0.93320 0.91894 0.92549 0.89023 0.91303 0.84062 0.83975 0.82206 0.84767 0.87565 0.88571 0.88212 0.88485 0.89834 0.90868 0.89399 0.91336 0.96079 0.96468 0.78339 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.38 37.16 0.31 -1.54 16 2 C -0.10 -1.23 2.72 -90.50 -0.25 -1.48 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.39 5.82 -3.71 -0.02 1.36 16 5 N -0.59 -7.22 2.41 -173.88 -0.42 -7.64 16 6 C 0.57 7.62 6.58 -12.33 -0.08 7.54 16 7 O -0.54 -8.51 14.68 5.32 0.08 -8.43 16 8 C -0.17 -2.07 4.87 -104.82 -0.51 -2.58 16 9 C -0.04 -0.41 7.59 -38.87 -0.29 -0.71 16 10 C -0.18 -1.48 10.10 -39.49 -0.40 -1.88 16 11 C 0.12 1.09 11.17 -17.47 -0.20 0.90 16 12 N -0.48 -5.62 9.37 -9.14 -0.09 -5.70 16 13 C 0.21 2.63 6.47 -82.17 -0.53 2.10 16 14 C -0.13 -1.58 5.55 -91.78 -0.51 -2.09 16 15 C -0.15 -1.55 10.02 -26.70 -0.27 -1.82 16 16 C -0.16 -1.64 10.23 -26.70 -0.27 -1.91 16 17 C 0.10 1.14 5.59 -3.71 -0.02 1.12 16 18 C -0.13 -1.80 4.90 -26.61 -0.13 -1.94 16 19 C -0.09 -1.32 1.96 -90.58 -0.18 -1.49 16 20 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 21 C 0.16 3.05 5.18 -4.05 -0.02 3.03 16 22 N -0.73 -17.87 5.32 -59.92 -0.32 -18.18 16 23 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 26 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 27 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.84 6.59 -51.93 -0.34 0.50 16 33 H 0.06 0.76 5.97 -51.93 -0.31 0.45 16 34 H 0.09 1.13 7.03 -51.93 -0.36 0.77 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.14 1.11 7.46 -52.49 -0.39 0.72 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.13 1.79 5.99 -51.93 -0.31 1.48 16 40 H 0.11 1.09 7.62 -51.93 -0.40 0.70 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.08 0.90 4.76 -51.93 -0.25 0.66 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 47 H 0.07 1.03 6.34 -51.93 -0.33 0.70 16 48 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.38 9.70 6.85 -40.82 -0.28 9.42 16 51 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -32.27 396.36 -10.58 -42.85 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.89 Total: 9.48 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.62 Total: -8.59 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.10 Total: -58.46 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.27 -10.58 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184745464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.646 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds