Wall clock time and date at job start Wed Apr 1 2020 03:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.49694 * 2 1 4 4 C 1.53188 * 109.49800 * 120.06430 * 2 1 3 5 5 N 1.46927 * 108.77251 * 65.31831 * 4 2 1 6 6 C 1.34782 * 120.62872 * 233.58164 * 5 4 2 7 7 O 1.21553 * 120.00103 * 355.99742 * 6 5 4 8 8 C 1.47838 * 119.99784 * 175.99476 * 6 5 4 9 9 C 1.40019 * 120.56025 * 54.54116 * 8 6 5 10 10 C 1.38361 * 118.28828 * 179.97438 * 9 8 6 11 11 C 1.38351 * 119.30567 * 359.97438 * 10 9 8 12 12 N 1.31930 * 121.07753 * 0.02562 * 11 10 9 13 13 C 1.31691 * 121.87946 * 359.68258 * 12 11 10 14 14 C 1.50704 * 119.71915 * 180.28754 * 13 12 11 15 15 C 1.52994 * 117.49760 * 13.70891 * 14 13 12 16 16 C 1.52993 * 117.49928 * 305.04623 * 14 13 12 17 17 C 1.46923 * 118.74042 * 53.60781 * 5 4 2 18 18 C 1.53194 * 108.77660 * 306.38934 * 17 5 4 19 19 C 1.53037 * 109.33999 * 54.61809 * 18 17 5 20 20 H 1.09009 * 109.45877 * 58.67093 * 19 18 17 21 21 C 1.52989 * 109.46216 * 178.63324 * 19 18 17 22 22 N 1.46503 * 109.47009 * 294.99925 * 21 19 18 23 23 C 1.36944 * 119.99913 * 180.02562 * 22 21 19 24 24 H 1.07996 * 119.99808 * 0.02562 * 23 22 21 25 25 C 1.38809 * 119.99558 * 180.02562 * 23 22 21 26 26 N 1.31620 * 120.00603 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99628 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47451 * 0.02562 * 27 25 23 29 29 H 1.48510 * 109.47107 * 120.00200 * 27 25 23 30 30 H 1.48496 * 109.47346 * 239.99944 * 27 25 23 31 31 H 1.09003 * 109.46839 * 299.93601 * 1 2 3 32 32 H 1.08996 * 109.47495 * 59.93377 * 1 2 3 33 33 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58991 * 305.53357 * 4 2 1 35 35 H 1.09000 * 109.58347 * 185.09855 * 4 2 1 36 36 H 1.08000 * 120.85934 * 359.95235 * 9 8 6 37 37 H 1.07997 * 120.34817 * 180.02562 * 10 9 8 38 38 H 1.07997 * 119.46572 * 179.97438 * 11 10 9 39 39 H 1.09002 * 115.55204 * 159.37162 * 14 13 12 40 40 H 1.09004 * 117.49938 * 359.97438 * 15 14 13 41 41 H 1.08992 * 117.50572 * 145.01781 * 15 14 13 42 42 H 1.09006 * 117.50121 * 214.97583 * 16 14 13 43 43 H 1.09005 * 117.49723 * 359.97438 * 16 14 13 44 44 H 1.09006 * 109.58489 * 186.60426 * 17 5 4 45 45 H 1.08996 * 109.58969 * 66.18213 * 17 5 4 46 46 H 1.08994 * 109.49801 * 174.58845 * 18 17 5 47 47 H 1.08999 * 109.49326 * 294.65224 * 18 17 5 48 48 H 1.08993 * 109.47286 * 55.00133 * 21 19 18 49 49 H 1.08999 * 109.47297 * 175.00512 * 21 19 18 50 50 H 0.96997 * 120.00330 * 0.02562 * 22 21 19 51 51 H 0.96996 * 120.00013 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 1.6516 -2.1378 1.1701 6 6 0.9748 -2.7215 2.1790 7 8 0.7448 -2.0984 3.1971 8 6 0.5123 -4.1195 2.0474 9 6 1.4152 -5.1410 1.7284 10 6 0.9315 -6.4326 1.6175 11 6 -0.4155 -6.6713 1.8239 12 7 -1.2432 -5.6887 2.1235 13 6 -0.8301 -4.4442 2.2458 14 6 -1.8170 -3.3604 2.5960 15 6 -3.1920 -3.7952 3.1069 16 6 -3.0479 -3.2094 1.7000 17 6 2.0140 -2.9039 -0.0300 18 6 1.5030 -2.1561 -1.2655 19 6 2.0400 -0.7231 -1.2487 20 1 3.1299 -0.7439 -1.2359 21 6 1.5592 0.0162 -2.4988 22 7 2.1465 -0.6040 -3.6891 23 6 1.8580 -0.1082 -4.9325 24 1 1.1979 0.7403 -5.0357 25 6 2.4141 -0.6962 -6.0603 26 7 3.2191 -1.7299 -5.9345 27 14 2.0200 -0.0203 -7.7565 28 1 1.0979 1.1365 -7.6266 29 1 3.2748 0.4195 -8.4180 30 1 1.3746 -1.0790 -8.5736 31 1 -0.3633 0.5129 0.8906 32 1 -0.3634 0.5148 -0.8893 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6007 -0.2726 2.1390 35 1 3.1275 -0.6459 1.2981 36 1 2.4621 -4.9263 1.5724 37 1 1.5987 -7.2460 1.3732 38 1 -0.7958 -7.6784 1.7376 39 1 -1.3874 -2.4520 3.0183 40 1 -3.3830 -4.8653 3.1893 41 1 -3.6672 -3.1728 3.8649 42 1 -3.4284 -2.2017 1.5332 43 1 -3.1437 -3.8937 0.8570 44 1 1.5554 -3.8918 0.0148 45 1 3.0979 -3.0043 -0.0860 46 1 1.8480 -2.6633 -2.1664 47 1 0.4132 -2.1363 -1.2538 48 1 0.4724 -0.0400 -2.5586 49 1 1.8666 1.0605 -2.4441 50 1 2.7398 -1.3658 -3.5964 51 1 3.6073 -2.1409 -6.7226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184745464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:45 Heat of formation + Delta-G solvation = 19.082925 kcal Electronic energy + Delta-G solvation = -31004.336954 eV Core-core repulsion = 27096.773723 eV Total energy + Delta-G solvation = -3907.563231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.15138 -40.78457 -39.15197 -37.87496 -36.57194 -35.04138 -33.73813 -32.95517 -32.15426 -31.98187 -28.52126 -28.05015 -25.87285 -25.68100 -24.97846 -24.15445 -23.29590 -22.89527 -21.85489 -21.27740 -19.72798 -19.05007 -18.41390 -18.13622 -17.32515 -17.14761 -16.77439 -16.34541 -16.15073 -15.84014 -15.47252 -15.40161 -15.31765 -15.04601 -14.90081 -14.67569 -14.39222 -14.26573 -13.99183 -13.68870 -13.59362 -13.54737 -12.98186 -12.85066 -12.74795 -12.69134 -12.51125 -12.41948 -12.15846 -12.04134 -11.91543 -11.83013 -11.58822 -11.45328 -11.42640 -11.25058 -11.17138 -10.92177 -10.72187 -10.43032 -9.85329 -9.65997 -8.95793 -7.94334 -5.21557 -0.23794 0.14892 1.47573 1.47998 1.49488 1.57737 1.91545 2.52859 2.56518 3.05014 3.16209 3.29566 3.39489 3.55125 3.70790 3.74336 3.81790 3.86848 3.95309 4.01272 4.09911 4.14255 4.18881 4.22169 4.30342 4.37074 4.42897 4.48423 4.62877 4.64989 4.70487 4.72329 4.74321 4.80601 4.84234 4.93612 4.97140 4.99095 5.04211 5.06537 5.15225 5.16557 5.19105 5.23360 5.25850 5.30751 5.48021 5.52700 5.59790 5.61916 6.26015 6.29142 6.88639 6.99043 7.35873 8.12355 8.36422 9.29167 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.002844 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.334548 B = 9842.449397 C =10243.634428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.095 0.905 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.572 3.428 7 O -0.568 6.568 8 C -0.193 4.193 9 C -0.047 4.047 10 C -0.172 4.172 11 C 0.116 3.884 12 N -0.503 5.503 13 C 0.191 3.809 14 C -0.148 4.148 15 C -0.142 4.142 16 C -0.153 4.153 17 C 0.107 3.893 18 C -0.119 4.119 19 C -0.077 4.077 20 H 0.072 0.928 21 C 0.159 3.841 22 N -0.742 5.742 23 C -0.243 4.243 24 H 0.071 0.929 25 C -0.072 4.072 26 N -0.966 5.966 27 Si 0.968 3.032 28 H -0.269 1.269 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.160 0.840 37 H 0.178 0.822 38 H 0.192 0.808 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.017 0.983 49 H 0.016 0.984 50 H 0.376 0.624 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.731 -8.321 19.761 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.113 0.887 4 C -0.002 4.002 5 N -0.322 5.322 6 C 0.360 3.640 7 O -0.448 6.448 8 C -0.198 4.198 9 C -0.073 4.073 10 C -0.191 4.191 11 C -0.041 4.041 12 N -0.212 5.212 13 C 0.053 3.947 14 C -0.166 4.166 15 C -0.179 4.179 16 C -0.191 4.191 17 C -0.015 4.015 18 C -0.157 4.157 19 C -0.096 4.096 20 H 0.090 0.910 21 C 0.033 3.967 22 N -0.385 5.385 23 C -0.375 4.375 24 H 0.089 0.911 25 C -0.264 4.264 26 N -0.617 5.617 27 Si 0.798 3.202 28 H -0.194 1.194 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.177 0.823 37 H 0.195 0.805 38 H 0.209 0.791 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.035 0.965 49 H 0.034 0.966 50 H 0.209 0.791 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.809 -8.031 20.301 22.869 hybrid contribution 1.082 0.327 -1.442 1.832 sum -5.728 -7.705 18.859 21.162 Atomic orbital electron populations 1.21805 0.95079 1.01345 1.01506 1.21420 0.96406 0.99962 0.93171 0.88697 1.21747 1.00519 0.79483 0.98500 1.48047 1.54633 1.11894 1.17645 1.18245 0.76800 0.86212 0.82738 1.90724 1.58349 1.65691 1.30037 1.20638 0.96049 0.94708 1.08446 1.22046 1.00486 0.92298 0.92454 1.22482 0.97619 0.97704 1.01331 1.23560 0.90383 0.99007 0.91171 1.67441 1.39745 0.99703 1.14335 1.20415 0.90526 0.91686 0.92048 1.21190 0.89196 0.98274 1.07981 1.22975 0.95553 1.02499 0.96908 1.22967 0.98499 1.02977 0.94615 1.22053 1.01430 0.95271 0.82755 1.21819 1.00696 0.95777 0.97453 1.21178 1.00128 0.94744 0.93555 0.91006 1.20829 0.95355 0.94744 0.85799 1.42560 1.56789 1.37568 1.01550 1.19626 1.22166 1.10448 0.85266 0.91145 1.25470 1.00643 0.99090 1.01244 1.69792 1.37063 1.25796 1.29026 0.85152 0.77122 0.77560 0.80411 1.19375 1.22027 1.22033 0.92328 0.92795 0.93597 0.89341 0.89643 0.82281 0.80454 0.79144 0.86604 0.87726 0.87171 0.87409 0.89140 0.88783 0.89105 0.91730 0.92424 0.96494 0.96592 0.79142 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.38 71.98 0.60 -2.91 16 2 C -0.09 -2.16 2.72 -10.72 -0.03 -2.19 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.12 2.66 5.82 86.36 0.50 3.16 16 5 N -0.59 -13.75 2.41 -822.32 -1.98 -15.73 16 6 C 0.57 15.07 6.58 86.78 0.57 15.65 16 7 O -0.57 -18.17 14.68 -3.88 -0.06 -18.23 16 8 C -0.19 -4.56 4.87 -19.99 -0.10 -4.66 16 9 C -0.05 -0.81 7.59 22.73 0.17 -0.63 16 10 C -0.17 -2.28 10.10 22.33 0.23 -2.05 16 11 C 0.12 1.81 11.17 84.70 0.95 2.76 16 12 N -0.50 -11.19 9.37 -182.84 -1.71 -12.90 16 13 C 0.19 4.74 6.47 42.89 0.28 5.01 16 14 C -0.15 -3.61 5.55 -11.54 -0.06 -3.68 16 15 C -0.14 -2.84 10.02 30.62 0.31 -2.53 16 16 C -0.15 -3.23 10.23 30.62 0.31 -2.92 16 17 C 0.11 2.34 5.59 86.36 0.48 2.82 16 18 C -0.12 -3.38 4.90 30.67 0.15 -3.23 16 19 C -0.08 -2.26 1.96 -10.77 -0.02 -2.28 16 20 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 21 C 0.16 6.11 5.18 86.38 0.45 6.56 16 22 N -0.74 -36.47 5.32 -343.47 -1.83 -38.30 16 23 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 24 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 25 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 26 N -0.97 -57.65 13.06 21.65 0.28 -57.37 16 27 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 30 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.43 6.59 -2.39 -0.02 1.42 16 33 H 0.04 1.24 5.97 -2.38 -0.01 1.23 16 34 H 0.09 2.09 7.03 -2.39 -0.02 2.08 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.16 2.07 7.46 -2.91 -0.02 2.05 16 37 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 38 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.12 3.24 5.99 -2.39 -0.01 3.23 16 40 H 0.10 2.11 7.62 -2.38 -0.02 2.10 16 41 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.09 1.90 4.76 -2.38 -0.01 1.88 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.06 2.15 7.15 -2.39 -0.02 2.14 16 47 H 0.06 1.75 6.34 -2.39 -0.02 1.73 16 48 H 0.02 0.68 6.74 -2.39 -0.02 0.66 16 49 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.38 19.33 6.85 -92.71 -0.63 18.69 16 51 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -70.17 396.36 3.14 -67.03 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.31 Total: 35.11 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 6.09 Total: -7.30 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -5.24 Total: -124.30 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.06 Total: -18.23 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.17 3.14 -67.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184745464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.113 kcal (2) G-P(sol) polarization free energy of solvation -70.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds