Wall clock time and date at job start Wed Apr 1 2020 02:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46772 * 2 1 4 4 H 1.08997 * 109.47437 * 55.00057 * 3 2 1 5 5 F 1.39904 * 109.47250 * 295.00047 * 3 2 1 6 6 C 1.50698 * 109.46888 * 175.00162 * 3 2 1 7 7 O 1.21287 * 120.00009 * 44.99929 * 6 3 2 8 8 N 1.34780 * 120.00303 * 224.99724 * 6 3 2 9 9 C 1.47026 * 125.64285 * 359.97438 * 8 6 3 10 10 C 1.54321 * 107.26791 * 181.07596 * 9 8 6 11 11 C 1.55448 * 102.96961 * 22.19024 * 10 9 8 12 12 H 1.09004 * 111.00873 * 82.52495 * 11 10 9 13 13 N 1.46893 * 111.11668 * 206.46036 * 11 10 9 14 14 C 1.46897 * 111.00528 * 267.10217 * 13 11 10 15 15 C 1.50701 * 109.47533 * 180.02562 * 14 13 11 16 16 O 1.21278 * 119.99679 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00015 * 180.02562 * 15 14 13 18 18 C 1.46492 * 120.00197 * 359.97438 * 17 15 14 19 19 C 1.53005 * 109.47200 * 90.00226 * 18 17 15 20 20 C 1.46506 * 119.99942 * 179.97438 * 17 15 14 21 21 C 1.50705 * 109.46759 * 89.99733 * 20 17 15 22 22 H 1.07996 * 120.00006 * 359.97438 * 21 20 17 23 23 C 1.37881 * 119.99822 * 180.02562 * 21 20 17 24 24 N 1.31509 * 120.00134 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99823 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47380 * 90.00054 * 25 23 21 27 27 H 1.48505 * 109.46824 * 210.00135 * 25 23 21 28 28 H 1.48500 * 109.46815 * 329.99641 * 25 23 21 29 29 C 1.47419 * 125.65139 * 179.97438 * 8 6 3 30 30 H 1.09004 * 109.47520 * 299.99390 * 1 2 3 31 31 H 1.08997 * 109.47802 * 60.00113 * 1 2 3 32 32 H 1.09004 * 109.47364 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46881 * 240.00395 * 2 1 3 34 34 H 1.08997 * 109.47059 * 119.99911 * 2 1 3 35 35 H 1.08998 * 109.88266 * 300.48971 * 9 8 6 36 36 H 1.08997 * 109.88244 * 61.50329 * 9 8 6 37 37 H 1.08998 * 110.71927 * 140.55469 * 10 9 8 38 38 H 1.08997 * 110.72400 * 263.82847 * 10 9 8 39 39 H 1.00904 * 111.00537 * 31.06231 * 13 11 10 40 40 H 1.08998 * 109.47406 * 300.00715 * 14 13 11 41 41 H 1.09000 * 109.46962 * 60.00301 * 14 13 11 42 42 H 1.09002 * 109.47332 * 210.00068 * 18 17 15 43 43 H 1.08995 * 109.47504 * 330.00377 * 18 17 15 44 44 H 1.08997 * 109.47295 * 179.97438 * 19 18 17 45 45 H 1.08993 * 109.47038 * 300.00344 * 19 18 17 46 46 H 1.09002 * 109.46659 * 60.00045 * 19 18 17 47 47 H 1.08992 * 109.47174 * 209.99561 * 20 17 15 48 48 H 1.08998 * 109.46779 * 330.00220 * 20 17 15 49 49 H 0.96996 * 120.00269 * 180.02562 * 24 23 21 50 50 H 1.09002 * 110.36926 * 274.69484 * 29 8 6 51 51 H 1.08995 * 110.36556 * 36.90768 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 9 1.6698 2.0680 -1.1954 6 6 3.5418 1.4443 0.1238 7 8 4.2063 0.6811 -0.5447 8 7 4.1466 2.2941 0.9773 9 6 3.4657 3.2680 1.8431 10 6 4.5582 4.0338 2.6188 11 6 5.8185 3.8395 1.7298 12 1 5.8351 4.5605 0.9125 13 7 7.0480 3.9243 2.5290 14 6 7.5780 5.2943 2.5361 15 6 8.8367 5.3419 3.3634 16 8 9.2517 4.3336 3.8944 17 7 9.5012 6.5048 3.5132 18 6 9.0001 7.7226 2.8713 19 6 8.0421 8.4432 3.8221 20 6 10.7245 6.5512 4.3179 21 6 11.9158 6.2749 3.4372 22 1 11.7756 6.0835 2.3836 23 6 13.1846 6.2654 3.9768 24 7 14.2243 6.0249 3.2082 25 14 13.4268 6.5943 5.7997 26 1 13.3688 5.3119 6.5461 27 1 14.7498 7.2335 6.0158 28 1 12.3546 7.4992 6.2861 29 6 5.6004 2.4011 1.1975 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.8866 3.9631 1.2353 36 1 2.8082 2.7484 2.5400 37 1 4.3038 5.0904 2.7012 38 1 4.7107 3.5948 3.6048 39 1 6.8921 3.5920 3.4690 40 1 7.8029 5.6023 1.5150 41 1 6.8360 5.9687 2.9638 42 1 9.8374 8.3787 2.6332 43 1 8.4726 7.4595 1.9546 44 1 7.6697 9.3495 3.3447 45 1 7.2049 7.7872 4.0603 46 1 8.5697 8.7063 4.7389 47 1 10.8264 7.5387 4.7676 48 1 10.6712 5.7977 5.1038 49 1 15.1168 6.0178 3.5878 50 1 5.9271 1.6694 1.9364 51 1 6.1375 2.2582 0.2599 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184889792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:55 Heat of formation + Delta-G solvation = -139.671000 kcal Electronic energy + Delta-G solvation = -30252.535348 eV Core-core repulsion = 25907.318806 eV Total energy + Delta-G solvation = -4345.216542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.99176 -41.25562 -40.70945 -38.98482 -37.01211 -35.96366 -34.99216 -34.81620 -32.18414 -31.66352 -30.36490 -29.77431 -28.44167 -26.65808 -24.49347 -24.30865 -23.64378 -22.88601 -21.94701 -20.58156 -19.90882 -19.11377 -18.90445 -18.07121 -17.95030 -17.42462 -17.13484 -16.86521 -16.62571 -16.23044 -15.93037 -15.82562 -15.24111 -14.94498 -14.76931 -14.68386 -14.58558 -14.40564 -14.21743 -14.05805 -14.02950 -13.79991 -13.71023 -13.41980 -13.27675 -13.18734 -13.11168 -12.89431 -12.73159 -12.53575 -12.44763 -12.34944 -12.05414 -12.02268 -11.87943 -11.85215 -11.76716 -11.73468 -10.98159 -10.83171 -10.60557 -9.86231 -9.44595 -9.30936 -8.33643 -6.38718 1.19501 1.31784 1.36479 1.44591 1.59850 1.83737 2.27254 2.30953 3.00642 3.07313 3.10649 3.42044 3.54520 3.62099 3.66630 3.77518 3.84839 3.99029 4.13041 4.22230 4.29097 4.32507 4.37113 4.45974 4.46945 4.48832 4.60032 4.66809 4.70653 4.74762 4.78083 4.83768 4.92564 4.94743 5.02147 5.03942 5.04097 5.06181 5.10451 5.14526 5.33175 5.42156 5.48378 5.66834 5.91516 6.24407 6.25633 6.31115 6.63299 6.77160 6.80467 7.22443 7.48027 8.83493 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.001881 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.864778 B =14885.629974 C =15400.959908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.091 3.909 4 H 0.141 0.859 5 F -0.201 7.201 6 C 0.497 3.503 7 O -0.573 6.573 8 N -0.609 5.609 9 C 0.091 3.909 10 C -0.152 4.152 11 C 0.086 3.914 12 H 0.105 0.895 13 N -0.684 5.684 14 C 0.062 3.938 15 C 0.494 3.506 16 O -0.585 6.585 17 N -0.601 5.601 18 C 0.097 3.903 19 C -0.159 4.159 20 C 0.227 3.773 21 C -0.536 4.536 22 H 0.026 0.974 23 C 0.007 3.993 24 N -0.947 5.947 25 Si 0.950 3.050 26 H -0.277 1.277 27 H -0.276 1.276 28 H -0.236 1.236 29 C 0.110 3.890 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.354 0.646 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.048 0.952 48 H 0.017 0.983 49 H 0.268 0.732 50 H 0.067 0.933 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.104 0.392 0.031 34.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.052 3.948 4 H 0.159 0.841 5 F -0.182 7.182 6 C 0.284 3.716 7 O -0.452 6.452 8 N -0.342 5.342 9 C -0.030 4.030 10 C -0.191 4.191 11 C -0.025 4.025 12 H 0.123 0.877 13 N -0.316 5.316 14 C -0.069 4.069 15 C 0.282 3.718 16 O -0.465 6.465 17 N -0.333 5.333 18 C -0.025 4.025 19 C -0.217 4.217 20 C 0.104 3.896 21 C -0.575 4.575 22 H 0.044 0.956 23 C -0.190 4.190 24 N -0.587 5.587 25 Si 0.773 3.227 26 H -0.203 1.203 27 H -0.201 1.201 28 H -0.159 1.159 29 C -0.013 4.013 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.105 0.895 39 H 0.174 0.826 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.035 0.965 49 H 0.077 0.923 50 H 0.085 0.915 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -32.979 -0.743 -0.629 32.993 hybrid contribution 0.922 0.058 0.681 1.147 sum -32.057 -0.685 0.052 32.064 Atomic orbital electron populations 1.21762 0.92149 1.03488 1.03167 1.22026 0.98839 0.92786 1.04429 1.21827 0.89234 0.97466 0.86252 0.84133 1.92864 1.91815 1.84148 1.49375 1.21353 0.91561 0.79711 0.78961 1.90738 1.67502 1.41228 1.45708 1.48619 1.08218 1.36934 1.40425 1.22439 0.96093 0.91085 0.93406 1.23445 0.93768 1.03038 0.98896 1.22706 0.87556 0.95424 0.96855 0.87715 1.59754 1.30060 1.21811 1.20023 1.21815 0.93089 0.91198 1.00836 1.21326 0.86557 0.82444 0.81426 1.90650 1.70033 1.35078 1.50743 1.48059 1.25134 1.09469 1.50652 1.21783 0.98496 0.85566 0.96692 1.22148 0.98780 1.01268 0.99471 1.19248 0.82310 0.96982 0.91018 1.21608 0.91802 1.48431 0.95625 0.95579 1.25905 0.95366 0.94262 1.03494 1.70059 0.99433 1.50970 1.38243 0.85687 0.78831 0.79313 0.78916 1.20297 1.20097 1.15868 1.22116 0.80290 0.98201 1.00724 0.90314 0.92485 0.90933 0.91783 0.88984 0.88677 0.88136 0.86837 0.89509 0.82558 0.87315 0.88213 0.91395 0.88506 0.88837 0.91478 0.93699 0.93405 0.96463 0.92347 0.91468 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.83 71.98 0.71 -0.44 16 2 C -0.14 -1.81 5.41 30.59 0.17 -1.64 16 3 C 0.09 1.26 3.54 29.85 0.11 1.36 16 4 H 0.14 0.74 6.73 -2.39 -0.02 0.73 16 5 F -0.20 -3.72 16.75 44.97 0.75 -2.96 16 6 C 0.50 10.69 7.19 87.66 0.63 11.32 16 7 O -0.57 -18.24 16.86 -3.05 -0.05 -18.29 16 8 N -0.61 -10.36 3.33 -811.78 -2.70 -13.06 16 9 C 0.09 0.66 5.91 86.73 0.51 1.17 16 10 C -0.15 -1.19 6.56 31.88 0.21 -0.98 16 11 C 0.09 1.36 3.39 46.41 0.16 1.52 16 12 H 0.10 1.52 7.83 -2.38 -0.02 1.50 16 13 N -0.68 -16.05 6.04 -487.88 -2.95 -18.99 16 14 C 0.06 1.46 4.58 85.56 0.39 1.85 16 15 C 0.49 18.67 7.71 87.66 0.68 19.34 16 16 O -0.59 -28.51 15.78 -3.02 -0.05 -28.56 16 17 N -0.60 -23.02 2.46 -826.17 -2.03 -25.05 16 18 C 0.10 2.56 5.93 86.38 0.51 3.08 16 19 C -0.16 -2.93 10.24 71.98 0.74 -2.20 16 20 C 0.23 10.88 4.23 85.63 0.36 11.24 16 21 C -0.54 -31.76 9.94 25.60 0.25 -31.50 16 22 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 23 C 0.01 0.44 5.47 84.66 0.46 0.91 16 24 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 25 Si 0.95 44.61 27.47 68.60 1.88 46.50 16 26 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 28 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 29 C 0.11 2.34 6.60 86.86 0.57 2.91 16 30 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.06 0.52 7.94 -2.39 -0.02 0.51 16 32 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.06 1.12 8.05 -2.39 -0.02 1.11 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.10 0.26 7.91 -2.39 -0.02 0.24 16 37 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.09 0.69 7.76 -2.39 -0.02 0.67 16 39 H 0.35 8.39 7.90 -89.69 -0.71 7.68 16 40 H 0.11 2.36 7.35 -2.39 -0.02 2.35 16 41 H 0.10 1.48 7.18 -2.39 -0.02 1.47 16 42 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 43 H 0.10 1.97 6.44 -2.39 -0.02 1.96 16 44 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 1.03 7.22 -2.39 -0.02 1.01 16 46 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.05 2.10 7.13 -2.39 -0.02 2.09 16 48 H 0.02 0.89 6.85 -2.39 -0.02 0.88 16 49 H 0.27 15.94 8.31 -92.71 -0.77 15.16 16 50 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.06 1.53 8.03 -2.39 -0.02 1.51 16 Total: -1.00 -89.25 413.81 1.78 -87.48 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.16 Total: 15.39 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 6.46 Total: 17.94 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -7.38 Total: -117.49 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -0.10 Total: -46.85 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.75 Total: -2.96 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.50 kcal Total: -89.25 1.78 -87.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184889792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.195 kcal (2) G-P(sol) polarization free energy of solvation -89.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds