Wall clock time and date at job start Wed Apr 1 2020 03:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.49781 * 2 1 4 4 C 1.52755 * 109.39033 * 120.08095 * 2 1 3 5 5 N 1.46931 * 109.00788 * 65.51270 * 4 2 1 6 6 C 1.34773 * 120.63245 * 233.58905 * 5 4 2 7 7 O 1.21276 * 120.00108 * 4.77374 * 6 5 4 8 8 C 1.50707 * 119.99804 * 184.77956 * 6 5 4 9 9 C 1.50692 * 115.55191 * 78.75208 * 8 6 5 10 10 C 1.38669 * 120.42060 * 40.04310 * 9 8 6 11 11 C 1.38629 * 118.42043 * 180.02562 * 10 9 8 12 12 C 1.38227 * 119.16211 * 0.02562 * 11 10 9 13 13 N 1.31852 * 120.76593 * 0.02562 * 12 11 10 14 14 C 1.31887 * 121.72055 * 359.70069 * 13 12 11 15 15 C 1.52999 * 117.49597 * 293.07894 * 8 6 5 16 16 C 1.53004 * 60.03453 * 252.47985 * 15 8 6 17 17 C 1.46933 * 118.73417 * 53.30953 * 5 4 2 18 18 C 1.53183 * 108.77697 * 306.64416 * 17 5 4 19 19 C 1.53042 * 109.49666 * 239.94189 * 2 1 3 20 20 H 1.08999 * 109.46277 * 181.36314 * 19 2 1 21 21 C 1.52999 * 109.46263 * 61.40123 * 19 2 1 22 22 N 1.46498 * 109.47190 * 174.93523 * 21 19 2 23 23 C 1.36939 * 120.00223 * 180.02562 * 22 21 19 24 24 H 1.07997 * 119.99491 * 359.97438 * 23 22 21 25 25 C 1.38808 * 120.00178 * 179.97438 * 23 22 21 26 26 N 1.31623 * 120.00068 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99939 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46957 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.46951 * 119.99967 * 27 25 23 30 30 H 1.48507 * 109.47348 * 240.00086 * 27 25 23 31 31 H 1.08998 * 109.47350 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47403 * 300.06149 * 1 2 3 33 33 H 1.09007 * 109.47448 * 60.05910 * 1 2 3 34 34 H 1.09002 * 109.50967 * 305.63579 * 4 2 1 35 35 H 1.08998 * 109.43959 * 185.34969 * 4 2 1 36 36 H 1.07998 * 120.78796 * 359.97438 * 10 9 8 37 37 H 1.08002 * 120.42193 * 180.02562 * 11 10 9 38 38 H 1.08001 * 119.62139 * 179.97438 * 12 11 10 39 39 H 1.08010 * 119.61404 * 180.31350 * 14 13 12 40 40 H 1.08999 * 117.49860 * 359.97438 * 15 8 6 41 41 H 1.08999 * 117.50397 * 144.97777 * 15 8 6 42 42 H 1.09001 * 117.49887 * 107.50204 * 16 15 8 43 43 H 1.08997 * 117.49912 * 252.52369 * 16 15 8 44 44 H 1.08998 * 109.58637 * 66.43641 * 17 5 4 45 45 H 1.09006 * 109.58058 * 186.71255 * 17 5 4 46 46 H 1.08998 * 109.49688 * 174.58892 * 18 17 5 47 47 H 1.09005 * 109.49733 * 294.68421 * 18 17 5 48 48 H 1.09004 * 109.46748 * 294.93169 * 21 19 2 49 49 H 1.08996 * 109.47422 * 54.93254 * 21 19 2 50 50 H 0.96998 * 119.99907 * 359.97438 * 22 21 19 51 51 H 0.96998 * 119.99961 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0371 -0.7222 1.2468 5 7 1.6528 -2.1383 1.1692 6 6 0.9758 -2.7224 2.1776 7 8 0.6024 -2.0589 3.1216 8 6 0.6829 -4.2000 2.1321 9 6 1.8303 -5.1019 2.5074 10 6 2.6717 -4.7676 3.5577 11 6 3.7145 -5.6270 3.8669 12 6 3.8801 -6.7803 3.1231 13 7 3.0609 -7.0658 2.1301 14 6 2.0553 -6.2742 1.8113 15 6 -0.2820 -4.6960 1.0532 16 6 -0.7277 -4.6538 2.5163 17 6 2.0153 -2.9037 -0.0315 18 6 1.5036 -2.1556 -1.2663 19 6 2.0407 -0.7226 -1.2487 20 1 3.1304 -0.7435 -1.2359 21 6 1.5599 0.0175 -2.4984 22 7 2.1472 -0.6020 -3.6890 23 6 1.8587 -0.1055 -4.9322 24 1 1.1980 0.7426 -5.0349 25 6 2.4156 -0.6921 -6.0603 26 7 3.2205 -1.7260 -5.9351 27 14 2.0215 -0.0152 -7.7561 28 1 1.0985 1.1408 -7.6254 29 1 3.2761 0.4260 -8.4167 30 1 1.3770 -1.0738 -8.5743 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3634 0.5129 -0.8905 34 1 1.5933 -0.2714 2.1345 35 1 3.1228 -0.6405 1.2970 36 1 2.5188 -3.8588 4.1208 37 1 4.3891 -5.3985 4.6788 38 1 4.6902 -7.4549 3.3573 39 1 1.4020 -6.5438 0.9945 40 1 -0.7052 -3.9535 0.3767 41 1 -0.0867 -5.6745 0.6146 42 1 -1.4441 -3.8836 2.8022 43 1 -0.8252 -5.6046 3.0403 44 1 3.0992 -3.0036 -0.0877 45 1 1.5592 -3.8927 0.0143 46 1 1.8486 -2.6623 -2.1676 47 1 0.4138 -2.1358 -1.2541 48 1 0.4730 -0.0387 -2.5583 49 1 1.8673 1.0618 -2.4431 50 1 2.7409 -1.3635 -3.5967 51 1 3.6093 -2.1362 -6.7234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184992567.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:06 Heat of formation + Delta-G solvation = 37.762140 kcal Electronic energy + Delta-G solvation = -30986.092771 eV Core-core repulsion = 27079.339531 eV Total energy + Delta-G solvation = -3906.753239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28558 -40.06551 -38.42275 -36.84672 -34.96712 -33.33630 -32.71401 -31.78268 -31.16543 -30.33959 -27.25492 -27.03757 -25.12061 -24.06350 -23.71044 -23.04854 -22.72470 -22.36016 -21.14779 -19.55495 -18.26918 -17.85302 -17.27396 -16.92300 -16.39258 -16.10043 -15.67488 -15.18340 -14.97845 -14.83007 -14.39664 -14.29688 -14.02979 -13.95509 -13.74493 -13.49541 -13.21672 -13.10856 -12.92784 -12.57933 -12.45627 -12.31692 -12.15776 -11.78459 -11.61676 -11.48065 -11.25921 -11.07019 -10.96912 -10.91747 -10.78515 -10.36906 -10.30599 -10.20213 -10.04260 -9.98209 -9.90452 -9.65257 -9.53178 -9.15996 -8.87660 -8.62636 -6.91760 -5.77975 -3.05937 0.74583 0.97534 2.40579 2.78992 3.25205 3.42081 3.48115 3.50044 3.62868 3.98947 4.18725 4.27523 4.44765 4.51426 4.57663 4.65353 4.68510 4.83153 4.88264 4.92924 5.00079 5.12321 5.15375 5.23490 5.26017 5.35014 5.47346 5.49345 5.53433 5.57550 5.61226 5.68990 5.75114 5.76683 5.82233 5.85009 5.86998 5.93615 6.04208 6.07654 6.18702 6.27394 6.35598 6.36127 6.44475 6.47202 6.64805 6.80118 6.92384 7.32102 7.66761 7.69758 8.03647 8.41400 9.52649 10.10907 10.45400 11.45007 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.002832 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.585350 B = 9885.884653 C =10911.271033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.116 3.884 5 N -0.594 5.594 6 C 0.556 3.444 7 O -0.541 6.541 8 C -0.118 4.118 9 C -0.090 4.090 10 C -0.063 4.063 11 C -0.168 4.168 12 C 0.095 3.905 13 N -0.478 5.478 14 C 0.105 3.895 15 C -0.160 4.160 16 C -0.132 4.132 17 C 0.104 3.896 18 C -0.126 4.126 19 C -0.089 4.089 20 H 0.071 0.929 21 C 0.159 3.841 22 N -0.732 5.732 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.933 5.933 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.021 0.979 49 H 0.017 0.983 50 H 0.383 0.617 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.059 -7.732 21.400 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.006 4.006 5 N -0.326 5.326 6 C 0.343 3.657 7 O -0.418 6.418 8 C -0.121 4.121 9 C -0.092 4.092 10 C -0.089 4.089 11 C -0.187 4.187 12 C -0.062 4.062 13 N -0.186 5.186 14 C -0.052 4.052 15 C -0.197 4.197 16 C -0.169 4.169 17 C -0.019 4.019 18 C -0.164 4.164 19 C -0.107 4.107 20 H 0.089 0.911 21 C 0.031 3.969 22 N -0.376 5.376 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.210 4.210 26 N -0.582 5.582 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.174 0.826 39 H 0.175 0.825 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.086 0.914 48 H 0.039 0.961 49 H 0.035 0.965 50 H 0.217 0.783 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.176 -8.031 21.283 22.969 hybrid contribution 0.095 0.938 -0.581 1.107 sum -3.081 -7.093 20.702 22.100 Atomic orbital electron populations 1.21853 0.94895 1.01858 1.01483 1.21390 0.96697 0.99501 0.94190 0.89990 1.21629 0.99451 0.80139 0.99392 1.48018 1.55172 1.11384 1.18027 1.19226 0.77271 0.87107 0.82076 1.90679 1.52236 1.64593 1.34337 1.19940 0.91572 0.92064 1.08574 1.19705 0.96193 0.96040 0.97285 1.21480 0.93142 0.99267 0.95052 1.22150 0.98993 0.95903 1.01704 1.22822 0.97214 0.95194 0.90962 1.67761 1.03743 1.31738 1.15368 1.22708 0.94570 0.89985 0.97970 1.23305 1.00414 1.03669 0.92324 1.23115 0.93130 1.03206 0.97446 1.21946 1.00506 0.95328 0.84079 1.21962 1.01280 0.96019 0.97131 1.21305 1.00253 0.94678 0.94507 0.91088 1.20705 0.95887 0.94627 0.85647 1.42389 1.56736 1.37646 1.00861 1.19265 1.22892 1.10824 0.83837 0.91265 1.24719 1.00102 0.98408 0.97788 1.69661 1.35714 1.24447 1.28423 0.86142 0.77416 0.78005 0.84790 1.20613 1.21910 1.21879 0.92731 0.93332 0.91929 0.89176 0.91542 0.84825 0.84591 0.82612 0.82486 0.87246 0.87107 0.87469 0.87704 0.91471 0.89532 0.89345 0.91378 0.96090 0.96538 0.78316 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.38 37.15 0.31 -1.52 16 2 C -0.10 -1.24 2.71 -90.73 -0.25 -1.49 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.39 5.80 -3.93 -0.02 1.37 16 5 N -0.59 -7.14 2.42 -173.03 -0.42 -7.56 16 6 C 0.56 7.00 6.12 -10.98 -0.07 6.93 16 7 O -0.54 -8.35 16.40 5.56 0.09 -8.26 16 8 C -0.12 -1.18 1.19 -156.77 -0.19 -1.37 16 9 C -0.09 -0.90 5.30 -104.49 -0.55 -1.45 16 10 C -0.06 -0.63 9.47 -39.28 -0.37 -1.00 16 11 C -0.17 -1.40 10.11 -39.44 -0.40 -1.80 16 12 C 0.09 0.85 11.18 -17.55 -0.20 0.65 16 13 N -0.48 -5.20 10.36 -13.25 -0.14 -5.34 16 14 C 0.10 1.04 10.55 -17.55 -0.19 0.85 16 15 C -0.16 -1.32 7.63 -26.73 -0.20 -1.52 16 16 C -0.13 -1.14 9.85 -26.69 -0.26 -1.40 16 17 C 0.10 1.22 6.21 -3.71 -0.02 1.20 16 18 C -0.13 -1.77 4.91 -26.61 -0.13 -1.90 16 19 C -0.09 -1.33 1.96 -90.58 -0.18 -1.51 16 20 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 21 C 0.16 3.06 5.18 -4.04 -0.02 3.04 16 22 N -0.73 -17.90 5.32 -59.91 -0.32 -18.21 16 23 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 26 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 27 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 31 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 34 H 0.09 1.14 7.00 -51.93 -0.36 0.77 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.13 1.36 7.74 -52.49 -0.41 0.96 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.16 1.27 5.99 -52.48 -0.31 0.96 16 40 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.11 0.72 6.15 -51.93 -0.32 0.41 16 42 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.91 4.84 -51.93 -0.25 0.66 16 46 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 47 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 48 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.38 9.76 6.85 -40.82 -0.28 9.48 16 51 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 397.36 15.07 5.99 5.99 Total: -1.00 -32.51 397.36 -9.91 -42.42 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.83 Total: 8.86 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.98 Total: -8.10 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.15 Total: -58.12 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.51 -9.91 -42.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184992567.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.185 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds