Wall clock time and date at job start Wed Apr 1 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.49781 * 2 1 4 4 C 1.52755 * 109.39033 * 120.08095 * 2 1 3 5 5 N 1.46931 * 109.00788 * 65.51270 * 4 2 1 6 6 C 1.34773 * 120.63245 * 233.58905 * 5 4 2 7 7 O 1.21276 * 120.00108 * 4.77374 * 6 5 4 8 8 C 1.50707 * 119.99804 * 184.77956 * 6 5 4 9 9 C 1.50692 * 115.55191 * 78.75208 * 8 6 5 10 10 C 1.38669 * 120.42060 * 40.04310 * 9 8 6 11 11 C 1.38629 * 118.42043 * 180.02562 * 10 9 8 12 12 C 1.38227 * 119.16211 * 0.02562 * 11 10 9 13 13 N 1.31852 * 120.76593 * 0.02562 * 12 11 10 14 14 C 1.31887 * 121.72055 * 359.70069 * 13 12 11 15 15 C 1.52999 * 117.49597 * 293.07894 * 8 6 5 16 16 C 1.53004 * 60.03453 * 252.47985 * 15 8 6 17 17 C 1.46933 * 118.73417 * 53.30953 * 5 4 2 18 18 C 1.53183 * 108.77697 * 306.64416 * 17 5 4 19 19 C 1.53042 * 109.49666 * 239.94189 * 2 1 3 20 20 H 1.08999 * 109.46277 * 181.36314 * 19 2 1 21 21 C 1.52999 * 109.46263 * 61.40123 * 19 2 1 22 22 N 1.46498 * 109.47190 * 174.93523 * 21 19 2 23 23 C 1.36939 * 120.00223 * 180.02562 * 22 21 19 24 24 H 1.07997 * 119.99491 * 359.97438 * 23 22 21 25 25 C 1.38808 * 120.00178 * 179.97438 * 23 22 21 26 26 N 1.31623 * 120.00068 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99939 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46957 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.46951 * 119.99967 * 27 25 23 30 30 H 1.48507 * 109.47348 * 240.00086 * 27 25 23 31 31 H 1.08998 * 109.47350 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47403 * 300.06149 * 1 2 3 33 33 H 1.09007 * 109.47448 * 60.05910 * 1 2 3 34 34 H 1.09002 * 109.50967 * 305.63579 * 4 2 1 35 35 H 1.08998 * 109.43959 * 185.34969 * 4 2 1 36 36 H 1.07998 * 120.78796 * 359.97438 * 10 9 8 37 37 H 1.08002 * 120.42193 * 180.02562 * 11 10 9 38 38 H 1.08001 * 119.62139 * 179.97438 * 12 11 10 39 39 H 1.08010 * 119.61404 * 180.31350 * 14 13 12 40 40 H 1.08999 * 117.49860 * 359.97438 * 15 8 6 41 41 H 1.08999 * 117.50397 * 144.97777 * 15 8 6 42 42 H 1.09001 * 117.49887 * 107.50204 * 16 15 8 43 43 H 1.08997 * 117.49912 * 252.52369 * 16 15 8 44 44 H 1.08998 * 109.58637 * 66.43641 * 17 5 4 45 45 H 1.09006 * 109.58058 * 186.71255 * 17 5 4 46 46 H 1.08998 * 109.49688 * 174.58892 * 18 17 5 47 47 H 1.09005 * 109.49733 * 294.68421 * 18 17 5 48 48 H 1.09004 * 109.46748 * 294.93169 * 21 19 2 49 49 H 1.08996 * 109.47422 * 54.93254 * 21 19 2 50 50 H 0.96998 * 119.99907 * 359.97438 * 22 21 19 51 51 H 0.96998 * 119.99961 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0371 -0.7222 1.2468 5 7 1.6528 -2.1383 1.1692 6 6 0.9758 -2.7224 2.1776 7 8 0.6024 -2.0589 3.1216 8 6 0.6829 -4.2000 2.1321 9 6 1.8303 -5.1019 2.5074 10 6 2.6717 -4.7676 3.5577 11 6 3.7145 -5.6270 3.8669 12 6 3.8801 -6.7803 3.1231 13 7 3.0609 -7.0658 2.1301 14 6 2.0553 -6.2742 1.8113 15 6 -0.2820 -4.6960 1.0532 16 6 -0.7277 -4.6538 2.5163 17 6 2.0153 -2.9037 -0.0315 18 6 1.5036 -2.1556 -1.2663 19 6 2.0407 -0.7226 -1.2487 20 1 3.1304 -0.7435 -1.2359 21 6 1.5599 0.0175 -2.4984 22 7 2.1472 -0.6020 -3.6890 23 6 1.8587 -0.1055 -4.9322 24 1 1.1980 0.7426 -5.0349 25 6 2.4156 -0.6921 -6.0603 26 7 3.2205 -1.7260 -5.9351 27 14 2.0215 -0.0152 -7.7561 28 1 1.0985 1.1408 -7.6254 29 1 3.2761 0.4260 -8.4167 30 1 1.3770 -1.0738 -8.5743 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3634 0.5129 -0.8905 34 1 1.5933 -0.2714 2.1345 35 1 3.1228 -0.6405 1.2970 36 1 2.5188 -3.8588 4.1208 37 1 4.3891 -5.3985 4.6788 38 1 4.6902 -7.4549 3.3573 39 1 1.4020 -6.5438 0.9945 40 1 -0.7052 -3.9535 0.3767 41 1 -0.0867 -5.6745 0.6146 42 1 -1.4441 -3.8836 2.8022 43 1 -0.8252 -5.6046 3.0403 44 1 3.0992 -3.0036 -0.0877 45 1 1.5592 -3.8927 0.0143 46 1 1.8486 -2.6623 -2.1676 47 1 0.4138 -2.1358 -1.2541 48 1 0.4730 -0.0387 -2.5583 49 1 1.8673 1.0618 -2.4431 50 1 2.7409 -1.3635 -3.5967 51 1 3.6093 -2.1362 -6.7234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184992567.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:05 Heat of formation + Delta-G solvation = 19.692606 kcal Electronic energy + Delta-G solvation = -30986.876324 eV Core-core repulsion = 27079.339531 eV Total energy + Delta-G solvation = -3907.536793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.14723 -40.93032 -39.48595 -37.70984 -36.56312 -34.77205 -33.41893 -33.20780 -31.97852 -31.83328 -28.53768 -28.26052 -26.13417 -25.29526 -24.76678 -24.14610 -23.72345 -23.16187 -22.44776 -20.53551 -19.57820 -18.89707 -18.58765 -17.93566 -17.25215 -17.01500 -16.77695 -16.48733 -16.07961 -15.76193 -15.56745 -15.44292 -15.34186 -15.14191 -14.79176 -14.70650 -14.37781 -14.04662 -14.00856 -13.85189 -13.67111 -13.51169 -12.98675 -12.97171 -12.83906 -12.69458 -12.53202 -12.41924 -12.15092 -12.06324 -11.99529 -11.90583 -11.72352 -11.56079 -11.42063 -11.23737 -10.93270 -10.84192 -10.71575 -10.33389 -9.85683 -9.67551 -8.95408 -7.93551 -5.21027 0.06457 0.26419 1.44178 1.48042 1.48385 1.58172 1.85785 2.53664 2.57017 2.91645 3.29292 3.32265 3.40200 3.61348 3.70092 3.72378 3.74421 3.83618 3.86783 3.94496 4.03240 4.05255 4.20569 4.27635 4.31361 4.38443 4.44527 4.47013 4.59987 4.64270 4.67278 4.72432 4.75624 4.80575 4.84604 4.87231 4.91631 4.97050 5.06462 5.10960 5.12379 5.17147 5.18535 5.22853 5.25568 5.32391 5.49340 5.53497 5.61093 5.70316 6.29458 6.33105 6.97984 7.05138 7.36265 8.12874 8.36565 9.29906 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.002832 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.585350 B = 9885.884653 C =10911.271033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.091 0.909 4 C 0.118 3.882 5 N -0.592 5.592 6 C 0.557 3.443 7 O -0.572 6.572 8 C -0.128 4.128 9 C -0.093 4.093 10 C -0.079 4.079 11 C -0.162 4.162 12 C 0.088 3.912 13 N -0.502 5.502 14 C 0.098 3.902 15 C -0.150 4.150 16 C -0.127 4.127 17 C 0.114 3.886 18 C -0.118 4.118 19 C -0.078 4.078 20 H 0.064 0.936 21 C 0.160 3.840 22 N -0.742 5.742 23 C -0.242 4.242 24 H 0.071 0.929 25 C -0.073 4.073 26 N -0.966 5.966 27 Si 0.968 3.032 28 H -0.269 1.269 29 H -0.294 1.294 30 H -0.293 1.293 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.161 0.839 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.022 0.978 49 H 0.014 0.986 50 H 0.375 0.625 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 -8.136 22.127 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.109 0.891 4 C -0.004 4.004 5 N -0.323 5.323 6 C 0.345 3.655 7 O -0.452 6.452 8 C -0.132 4.132 9 C -0.096 4.096 10 C -0.105 4.105 11 C -0.182 4.182 12 C -0.068 4.068 13 N -0.211 5.211 14 C -0.059 4.059 15 C -0.187 4.187 16 C -0.164 4.164 17 C -0.008 4.008 18 C -0.156 4.156 19 C -0.097 4.097 20 H 0.083 0.917 21 C 0.033 3.967 22 N -0.385 5.385 23 C -0.374 4.374 24 H 0.089 0.911 25 C -0.265 4.265 26 N -0.617 5.617 27 Si 0.798 3.202 28 H -0.193 1.193 29 H -0.222 1.222 30 H -0.220 1.220 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.179 0.821 38 H 0.198 0.802 39 H 0.189 0.811 40 H 0.123 0.877 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.138 0.862 44 H 0.086 0.914 45 H 0.120 0.880 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.039 0.961 49 H 0.032 0.968 50 H 0.208 0.792 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.422 -8.412 22.028 23.827 hybrid contribution 0.158 1.109 -0.732 1.338 sum -3.263 -7.303 21.297 22.749 Atomic orbital electron populations 1.21797 0.94763 1.01550 1.01480 1.21320 0.96658 0.99784 0.93154 0.89070 1.21611 1.00041 0.80138 0.98650 1.48040 1.54921 1.11401 1.17986 1.19611 0.76406 0.88057 0.81415 1.90659 1.53464 1.65637 1.35447 1.19864 0.92393 0.90443 1.10514 1.19691 0.96212 0.96156 0.97496 1.21581 0.94026 0.99507 0.95370 1.22409 0.98627 0.95175 1.01961 1.23282 0.97427 0.95730 0.90397 1.67786 1.04463 1.32437 1.16368 1.22912 0.94740 0.89868 0.98336 1.23405 0.98864 1.04369 0.92017 1.23166 0.91846 1.03507 0.97907 1.21843 1.00523 0.95610 0.82847 1.21827 1.01191 0.95351 0.97233 1.21180 0.99799 0.95126 0.93631 0.91736 1.20830 0.95543 0.94597 0.85692 1.42568 1.56771 1.37571 1.01578 1.19620 1.22106 1.10460 0.85218 0.91075 1.25481 1.00645 0.99102 1.01277 1.69802 1.37076 1.25832 1.29009 0.85146 0.77081 0.77569 0.80405 1.19330 1.22155 1.21979 0.93191 0.92518 0.92680 0.89419 0.90523 0.85627 0.82117 0.80199 0.81119 0.87693 0.85076 0.88287 0.86242 0.91436 0.87950 0.91744 0.91321 0.96060 0.96821 0.79212 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.38 71.98 0.60 -2.79 16 2 C -0.09 -2.17 2.71 -10.86 -0.03 -2.20 16 3 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 4 C 0.12 2.69 5.80 86.22 0.50 3.19 16 5 N -0.59 -13.64 2.42 -819.73 -1.98 -15.63 16 6 C 0.56 13.54 6.12 87.66 0.54 14.08 16 7 O -0.57 -17.43 16.40 -3.02 -0.05 -17.48 16 8 C -0.13 -2.43 1.19 -53.65 -0.06 -2.49 16 9 C -0.09 -1.74 5.30 -19.78 -0.10 -1.85 16 10 C -0.08 -1.47 9.47 22.47 0.21 -1.26 16 11 C -0.16 -2.42 10.11 22.36 0.23 -2.19 16 12 C 0.09 1.41 11.18 84.69 0.95 2.35 16 13 N -0.50 -10.13 10.36 -195.83 -2.03 -12.16 16 14 C 0.10 1.78 10.55 84.67 0.89 2.68 16 15 C -0.15 -2.21 7.63 30.60 0.23 -1.98 16 16 C -0.13 -2.02 9.85 30.62 0.30 -1.72 16 17 C 0.11 2.58 6.21 86.36 0.54 3.11 16 18 C -0.12 -3.26 4.91 30.67 0.15 -3.11 16 19 C -0.08 -2.32 1.96 -10.77 -0.02 -2.34 16 20 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 21 C 0.16 6.12 5.18 86.38 0.45 6.57 16 22 N -0.74 -36.54 5.32 -343.46 -1.83 -38.37 16 23 C -0.24 -13.34 9.99 84.03 0.84 -12.51 16 24 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 25 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 26 N -0.97 -58.00 13.06 21.65 0.28 -57.72 16 27 Si 0.97 45.74 29.55 68.60 2.03 47.76 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 30 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 31 H 0.05 1.26 5.97 -2.39 -0.01 1.25 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.42 6.58 -2.38 -0.02 1.40 16 34 H 0.09 2.12 7.00 -2.39 -0.02 2.10 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.13 2.51 7.74 -2.91 -0.02 2.49 16 37 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.17 2.42 5.99 -2.91 -0.02 2.41 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.13 1.39 6.15 -2.39 -0.01 1.38 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.10 2.01 4.84 -2.38 -0.01 2.00 16 46 H 0.06 2.13 7.15 -2.39 -0.02 2.11 16 47 H 0.07 1.89 6.34 -2.38 -0.02 1.87 16 48 H 0.02 0.83 6.74 -2.38 -0.02 0.82 16 49 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.38 19.46 6.85 -92.71 -0.63 18.83 16 51 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -69.26 397.36 3.41 -65.86 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.31 Total: 33.85 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 6.68 Total: -6.10 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -5.56 Total: -123.88 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.05 Total: -17.48 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.26 3.41 -65.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184992567.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.548 kcal (2) G-P(sol) polarization free energy of solvation -69.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds