Wall clock time and date at job start Wed Apr 1 2020 03:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49719 * 2 1 4 4 C 1.53186 * 109.50003 * 120.06637 * 2 1 3 5 5 N 1.46928 * 108.77989 * 174.58590 * 4 2 1 6 6 C 1.34776 * 120.63388 * 126.36474 * 5 4 2 7 7 O 1.21284 * 119.99360 * 5.47485 * 6 5 4 8 8 C 1.50700 * 120.00007 * 185.47104 * 6 5 4 9 9 C 1.50697 * 115.54898 * 65.65615 * 8 6 5 10 10 C 1.38677 * 120.42245 * 29.71693 * 9 8 6 11 11 C 1.38631 * 118.42259 * 180.26469 * 10 9 8 12 12 C 1.38222 * 119.15715 * 359.48531 * 11 10 9 13 13 N 1.31861 * 120.76718 * 0.25390 * 12 11 10 14 14 C 1.31880 * 121.72468 * 0.02562 * 13 12 11 15 15 C 1.53002 * 117.51638 * 211.35289 * 8 6 5 16 16 C 1.52994 * 117.49673 * 279.98228 * 8 6 5 17 17 C 1.46926 * 118.73491 * 306.64672 * 5 4 2 18 18 C 1.52760 * 109.01121 * 53.30530 * 17 5 4 19 19 C 1.53040 * 109.38362 * 305.58865 * 18 17 5 20 20 H 1.09002 * 109.46101 * 301.22353 * 19 18 17 21 21 C 1.52994 * 109.46227 * 181.25783 * 19 18 17 22 22 N 1.46500 * 109.47199 * 64.93220 * 21 19 18 23 23 C 1.36940 * 120.00268 * 179.97438 * 22 21 19 24 24 H 1.07994 * 120.00059 * 0.02562 * 23 22 21 25 25 C 1.38809 * 119.99861 * 180.02562 * 23 22 21 26 26 N 1.31616 * 120.00481 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99920 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47354 * 89.99563 * 27 25 23 29 29 H 1.48506 * 109.47003 * 210.00022 * 27 25 23 30 30 H 1.48498 * 109.46954 * 329.99360 * 27 25 23 31 31 H 1.09008 * 109.47012 * 299.93296 * 1 2 3 32 32 H 1.08993 * 109.47670 * 59.93217 * 1 2 3 33 33 H 1.09006 * 109.47208 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58922 * 54.79756 * 4 2 1 35 35 H 1.09005 * 109.70954 * 294.44344 * 4 2 1 36 36 H 1.07999 * 120.78300 * 0.02777 * 10 9 8 37 37 H 1.07994 * 120.41686 * 179.75647 * 11 10 9 38 38 H 1.08008 * 119.61475 * 180.27433 * 12 11 10 39 39 H 1.08001 * 119.61699 * 179.97438 * 14 13 12 40 40 H 1.08997 * 117.49606 * 214.97259 * 15 8 6 41 41 H 1.08995 * 117.49721 * 359.97438 * 15 8 6 42 42 H 1.08999 * 117.50222 * 359.97438 * 16 8 6 43 43 H 1.09005 * 117.49322 * 144.99913 * 16 8 6 44 44 H 1.09003 * 109.58696 * 173.13824 * 17 5 4 45 45 H 1.09000 * 109.58531 * 293.56218 * 17 5 4 46 46 H 1.09000 * 109.57030 * 185.55301 * 18 17 5 47 47 H 1.08999 * 109.38888 * 65.51390 * 18 17 5 48 48 H 1.08999 * 109.47579 * 184.93005 * 21 19 18 49 49 H 1.08999 * 109.47362 * 304.93154 * 21 19 18 50 50 H 0.97005 * 119.99480 * 0.02562 * 22 21 19 51 51 H 0.96996 * 120.00696 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2497 5 7 3.5046 -0.8288 1.1698 6 6 4.2812 -0.3850 2.1779 7 8 3.7729 0.0153 3.2038 8 6 5.7810 -0.3862 2.0305 9 6 6.3318 0.5453 0.9817 10 6 5.6643 1.7188 0.6645 11 6 6.2051 2.5425 -0.3106 12 6 7.3888 2.1748 -0.9222 13 7 7.9991 1.0537 -0.5914 14 6 7.5109 0.2434 0.3275 15 6 6.6154 -0.5985 3.2953 16 6 6.5114 -1.7123 2.2514 17 6 4.1055 -1.4216 -0.0329 18 6 3.5708 -0.6953 -1.2659 19 6 2.0408 -0.7234 -1.2482 20 1 1.6966 -1.7576 -1.2348 21 6 1.5036 -0.0238 -2.4983 22 7 1.8929 -0.7840 -3.6886 23 6 1.5214 -0.3469 -4.9321 24 1 0.9417 0.5584 -5.0353 25 6 1.8899 -1.0675 -6.0598 26 7 2.5968 -2.1705 -5.9341 27 14 1.3837 -0.4708 -7.7561 28 1 2.4310 0.4330 -8.2959 29 1 1.2201 -1.6360 -8.6622 30 1 0.0974 0.2647 -7.6586 31 1 -0.3633 0.5128 0.8907 32 1 -0.3634 0.5148 -0.8893 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6053 -1.7212 1.2985 35 1 1.7638 -0.1596 2.1403 36 1 4.7431 1.9826 1.1626 37 1 5.7101 3.4621 -0.5857 38 1 7.8191 2.8132 -1.6797 39 1 8.0389 -0.6665 0.5717 40 1 7.5627 -0.0643 3.3687 41 1 6.0797 -0.7368 4.2343 42 1 5.9073 -2.5837 2.5039 43 1 7.3904 -1.9109 1.6381 44 1 5.1895 -1.3159 0.0102 45 1 3.8412 -2.4774 -0.0909 46 1 3.9333 -1.1902 -2.1669 47 1 3.9158 0.3386 -1.2549 48 1 0.4165 0.0339 -2.4437 49 1 1.9183 0.9824 -2.5581 50 1 2.4133 -1.5974 -3.5959 51 1 2.8546 -2.6739 -6.7221 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184992569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:13 Heat of formation + Delta-G solvation = 16.675352 kcal Electronic energy + Delta-G solvation = -31348.519082 eV Core-core repulsion = 27440.851451 eV Total energy + Delta-G solvation = -3907.667631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16036 -40.80407 -39.50648 -37.66315 -36.58095 -34.96754 -33.52414 -33.37119 -32.03819 -31.82196 -28.52533 -28.18542 -26.11015 -25.32254 -24.70889 -23.93583 -23.37945 -23.00793 -22.48498 -20.96829 -19.85386 -19.15373 -18.56135 -17.93057 -17.36365 -16.99506 -16.78226 -16.46226 -15.86944 -15.74304 -15.66136 -15.52553 -15.22594 -15.14744 -14.92508 -14.46232 -14.37421 -14.11579 -13.93470 -13.88352 -13.77783 -13.15889 -13.02197 -12.94916 -12.93268 -12.83404 -12.70979 -12.41142 -12.19431 -12.04246 -11.99358 -11.88945 -11.73381 -11.67021 -11.50461 -11.21396 -10.99020 -10.86847 -10.72040 -10.36498 -9.81986 -9.70736 -8.96297 -7.94373 -5.21974 0.06084 0.26087 1.38355 1.47238 1.48135 1.56513 1.85775 2.55806 2.56206 2.96354 3.29286 3.29815 3.39241 3.60245 3.65467 3.70373 3.73602 3.81906 3.88609 3.90311 3.98118 4.01413 4.21564 4.25531 4.29086 4.36803 4.45751 4.50015 4.60211 4.60479 4.65167 4.70774 4.73112 4.77251 4.84139 4.86084 4.92920 4.97040 5.08429 5.09086 5.09795 5.14102 5.18035 5.23202 5.26121 5.34085 5.45920 5.51273 5.57407 5.68829 6.28233 6.29921 6.97033 7.02433 7.35191 8.11491 8.35416 9.28989 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.003481 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.588269 B = 8042.171577 C = 9433.270927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.120 3.880 5 N -0.596 5.596 6 C 0.555 3.445 7 O -0.574 6.574 8 C -0.135 4.135 9 C -0.090 4.090 10 C -0.076 4.076 11 C -0.165 4.165 12 C 0.086 3.914 13 N -0.499 5.499 14 C 0.097 3.903 15 C -0.127 4.127 16 C -0.138 4.138 17 C 0.116 3.884 18 C -0.114 4.114 19 C -0.077 4.077 20 H 0.069 0.931 21 C 0.158 3.842 22 N -0.741 5.741 23 C -0.245 4.245 24 H 0.071 0.929 25 C -0.071 4.071 26 N -0.966 5.966 27 Si 0.968 3.032 28 H -0.288 1.288 29 H -0.295 1.295 30 H -0.271 1.271 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.178 0.822 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.132 0.868 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.027 0.973 49 H 0.008 0.992 50 H 0.375 0.625 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.963 3.732 19.416 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.083 0.917 4 C -0.002 4.002 5 N -0.327 5.327 6 C 0.344 3.656 7 O -0.454 6.454 8 C -0.139 4.139 9 C -0.092 4.092 10 C -0.102 4.102 11 C -0.184 4.184 12 C -0.070 4.070 13 N -0.208 5.208 14 C -0.060 4.060 15 C -0.164 4.164 16 C -0.175 4.175 17 C -0.006 4.006 18 C -0.153 4.153 19 C -0.096 4.096 20 H 0.087 0.913 21 C 0.032 3.968 22 N -0.384 5.384 23 C -0.377 4.377 24 H 0.089 0.911 25 C -0.263 4.263 26 N -0.617 5.617 27 Si 0.797 3.203 28 H -0.215 1.215 29 H -0.221 1.221 30 H -0.196 1.196 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.138 0.862 37 H 0.170 0.830 38 H 0.192 0.808 39 H 0.195 0.805 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.129 0.871 43 H 0.150 0.850 44 H 0.113 0.887 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.044 0.956 49 H 0.026 0.974 50 H 0.207 0.793 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.370 3.842 19.408 21.482 hybrid contribution -1.116 0.385 -0.982 1.536 sum 7.253 4.227 18.426 20.248 Atomic orbital electron populations 1.21800 0.93311 1.02667 1.02368 1.21334 0.96909 0.99082 0.93162 0.91700 1.21720 0.78670 1.01557 0.98298 1.48076 1.06942 1.59718 1.17950 1.19663 0.87858 0.75828 0.82245 1.90663 1.75721 1.49291 1.29706 1.19908 0.90066 1.02664 1.01285 1.19718 0.96859 0.95107 0.97513 1.21451 0.99051 0.93520 0.96190 1.22350 0.97427 1.01751 0.96884 1.23167 0.92425 0.93347 0.98067 1.67763 1.34102 1.04770 1.14119 1.22953 0.92771 0.98983 0.91272 1.23168 1.00307 1.00915 0.92054 1.23411 1.02115 0.90343 1.01613 1.21726 0.98873 0.97355 0.82659 1.21665 0.95566 1.00521 0.97499 1.21207 0.94956 0.99698 0.93708 0.91279 1.20860 0.96713 0.93459 0.85750 1.42540 1.65217 1.29076 1.01545 1.19587 1.26859 1.05991 0.85241 0.91106 1.25470 1.01626 0.97953 1.01259 1.69789 1.44265 1.18534 1.29125 0.85222 0.78043 0.76812 0.80198 1.21515 1.22109 1.19612 0.91129 0.92512 0.91990 0.90163 0.89510 0.86218 0.82951 0.80815 0.80475 0.86268 0.88044 0.87095 0.84999 0.88681 0.90007 0.92099 0.92972 0.95563 0.97400 0.79260 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.81 71.98 0.63 -2.57 16 2 C -0.09 -2.09 2.41 -10.72 -0.03 -2.12 16 3 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 4 C 0.12 2.73 5.70 86.36 0.49 3.23 16 5 N -0.60 -13.88 2.98 -819.73 -2.44 -16.32 16 6 C 0.56 13.67 5.85 87.66 0.51 14.18 16 7 O -0.57 -17.70 16.14 -3.04 -0.05 -17.75 16 8 C -0.14 -2.58 1.25 -53.68 -0.07 -2.64 16 9 C -0.09 -1.83 4.00 -19.77 -0.08 -1.91 16 10 C -0.08 -1.70 9.44 22.47 0.21 -1.48 16 11 C -0.16 -3.38 10.11 22.36 0.23 -3.15 16 12 C 0.09 1.83 11.18 84.68 0.95 2.78 16 13 N -0.50 -11.72 10.36 -195.84 -2.03 -13.74 16 14 C 0.10 1.92 10.48 84.67 0.89 2.81 16 15 C -0.13 -1.92 9.73 30.60 0.30 -1.63 16 16 C -0.14 -1.78 9.04 30.59 0.28 -1.50 16 17 C 0.12 2.67 6.08 86.22 0.52 3.20 16 18 C -0.11 -3.36 5.23 30.53 0.16 -3.20 16 19 C -0.08 -2.31 1.73 -10.77 -0.02 -2.33 16 20 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 21 C 0.16 6.17 5.41 86.38 0.47 6.64 16 22 N -0.74 -36.85 5.32 -343.47 -1.83 -38.68 16 23 C -0.24 -13.59 9.99 84.03 0.84 -12.75 16 24 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 25 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 26 N -0.97 -58.27 13.06 21.65 0.28 -57.99 16 27 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 28 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 29 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 30 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 31 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 32 H 0.06 1.41 6.30 -2.39 -0.02 1.39 16 33 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 2.09 7.04 -2.38 -0.02 2.07 16 36 H 0.12 2.84 7.43 -2.91 -0.02 2.82 16 37 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.17 2.87 8.06 -2.91 -0.02 2.84 16 39 H 0.18 2.49 5.98 -2.91 -0.02 2.48 16 40 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.10 1.72 8.00 -2.39 -0.02 1.70 16 42 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.13 1.13 6.14 -2.38 -0.01 1.12 16 44 H 0.09 2.01 4.92 -2.39 -0.01 2.00 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 2.14 7.15 -2.39 -0.02 2.13 16 47 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.03 1.03 6.14 -2.39 -0.01 1.01 16 49 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 50 H 0.37 19.65 6.84 -92.70 -0.63 19.01 16 51 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -69.90 400.32 3.02 -66.88 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 0.30 Total: 35.72 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 6.75 Total: -6.01 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -6.01 Total: -126.73 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.05 Total: -17.75 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -69.90 3.02 -66.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184992569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.556 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds