Wall clock time and date at job start Wed Apr 1 2020 02:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46719 * 2 1 4 4 H 1.09005 * 109.47524 * 305.41718 * 3 2 1 5 5 C 1.50706 * 109.46933 * 185.42011 * 3 2 1 6 6 H 1.08001 * 120.00060 * 244.74574 * 5 3 2 7 7 C 1.37876 * 119.99907 * 64.75100 * 5 3 2 8 8 N 1.31509 * 120.00022 * 187.31755 * 7 5 3 9 9 Si 1.86802 * 119.99953 * 7.31962 * 7 5 3 10 10 H 1.48501 * 109.46860 * 269.99876 * 9 7 5 11 11 H 1.48496 * 109.47286 * 29.99973 * 9 7 5 12 12 H 1.48507 * 109.47219 * 150.00066 * 9 7 5 13 13 N 1.46497 * 109.47517 * 65.42174 * 3 2 1 14 14 C 1.34773 * 119.99937 * 274.99857 * 13 3 2 15 15 O 1.21280 * 119.99985 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00158 * 179.97438 * 14 13 3 17 17 C 1.54289 * 112.38050 * 297.87312 * 16 14 13 18 18 N 1.50112 * 103.94379 * 261.30831 * 17 16 14 19 19 C 1.48516 * 104.26641 * 320.10515 * 18 17 16 20 20 C 1.54294 * 104.71181 * 39.90832 * 19 18 17 21 21 H 1.09001 * 112.83582 * 98.82764 * 20 19 18 22 22 C 1.54286 * 109.31812 * 224.06058 * 20 19 18 23 23 N 1.48515 * 104.71377 * 135.94283 * 22 20 19 24 24 C 1.39673 * 111.00143 * 200.72018 * 23 22 20 25 25 C 1.38912 * 120.07293 * 329.57040 * 24 23 22 26 26 C 1.38108 * 119.92057 * 179.76396 * 25 24 23 27 27 C 1.38284 * 120.07638 * 0.51134 * 26 25 24 28 28 C 1.38289 * 120.15156 * 359.74059 * 27 26 25 29 29 C 1.38111 * 120.07105 * 0.02562 * 28 27 26 30 30 C 1.48525 * 104.20512 * 320.26984 * 23 22 20 31 31 H 1.09000 * 109.47291 * 60.00231 * 1 2 3 32 32 H 1.09005 * 109.47205 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47354 * 299.99561 * 1 2 3 34 34 H 1.09002 * 109.46689 * 240.00502 * 2 1 3 35 35 H 1.08996 * 109.47388 * 120.00245 * 2 1 3 36 36 H 0.96997 * 120.00312 * 354.94079 * 8 7 5 37 37 H 0.96999 * 120.00037 * 94.99207 * 13 3 2 38 38 H 1.08996 * 110.39071 * 20.24168 * 17 16 14 39 39 H 1.08996 * 110.39253 * 142.63355 * 17 16 14 40 40 H 1.00902 * 111.12678 * 79.74913 * 18 17 16 41 41 H 1.09004 * 110.38751 * 281.10223 * 19 18 17 42 42 H 1.08996 * 110.39110 * 158.71571 * 19 18 17 43 43 H 1.08999 * 110.39358 * 17.13364 * 22 20 19 44 44 H 1.08998 * 110.48339 * 254.79618 * 22 20 19 45 45 H 1.07991 * 120.03920 * 359.97438 * 25 24 23 46 46 H 1.08003 * 119.96118 * 180.25133 * 26 25 24 47 47 H 1.08003 * 119.92535 * 179.71721 * 27 26 25 48 48 H 1.07993 * 119.96567 * 179.97438 * 28 27 26 49 49 H 1.07990 * 120.03283 * 179.97438 * 29 28 27 50 50 H 1.09002 * 110.38411 * 280.92127 * 30 23 22 51 51 H 1.09002 * 110.38729 * 158.53655 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5995 1.9836 -0.8375 5 6 3.5410 1.4447 -0.1342 6 1 4.1547 1.8176 0.6724 7 6 4.1307 0.9706 -1.2868 8 7 5.4375 0.8375 -1.3500 9 14 3.0734 0.5173 -2.7586 10 1 2.6833 -0.9125 -2.6662 11 1 1.8533 1.3636 -2.7710 12 1 3.8434 0.7405 -4.0087 13 7 1.6610 2.0944 1.2560 14 6 0.4446 2.6610 1.3810 15 8 -0.3363 2.6315 0.4534 16 6 0.0546 3.3312 2.6732 17 6 0.0331 2.3477 3.8618 18 7 -1.4171 1.9889 4.0083 19 6 -2.1358 3.2678 3.7767 20 6 -1.3713 3.9428 2.6189 21 1 -1.8521 3.7954 1.6518 22 6 -1.1729 5.4384 2.9416 23 7 0.2379 5.7200 2.5728 24 6 0.7050 6.8665 3.2194 25 6 -0.1740 7.8950 3.5344 26 6 0.2905 9.0252 4.1781 27 6 1.6306 9.1382 4.4996 28 6 2.5094 8.1185 4.1828 29 6 2.0507 6.9835 3.5434 30 6 0.9799 4.5150 3.0236 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 5.9921 1.1411 -0.6144 37 1 2.2856 2.1182 1.9977 38 1 0.6305 1.4648 3.6350 39 1 0.4015 2.8350 4.7646 40 1 -1.6898 1.2930 3.3304 41 1 -2.0992 3.8911 4.6703 42 1 -3.1692 3.0758 3.4885 43 1 -1.3315 5.6220 4.0043 44 1 -1.8504 6.0502 2.3461 45 1 -1.2198 7.8095 3.2792 46 1 -0.3931 9.8235 4.4269 47 1 1.9920 10.0251 4.9989 48 1 3.5555 8.2101 4.4349 49 1 2.7376 6.1877 3.2959 50 1 1.1534 4.5561 4.0989 51 1 1.9256 4.4291 2.4884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220898587.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:40 Heat of formation + Delta-G solvation = 7.916597 kcal Electronic energy + Delta-G solvation = -31565.861171 eV Core-core repulsion = 27657.813732 eV Total energy + Delta-G solvation = -3908.047439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.38577 -39.48116 -38.14376 -36.02134 -35.27947 -32.70150 -32.00500 -31.47004 -31.18333 -30.32114 -28.28530 -27.18672 -26.33609 -23.67698 -23.11339 -22.48756 -22.35497 -21.24868 -20.84624 -19.73036 -19.00561 -18.05648 -17.48253 -16.94775 -16.07575 -15.84311 -15.64634 -15.46053 -15.00576 -14.89224 -14.48734 -14.33134 -13.79624 -13.59592 -13.52003 -13.33604 -13.04944 -12.82832 -12.60921 -12.50614 -12.46325 -12.26950 -12.11573 -11.91421 -11.74869 -11.47014 -11.33674 -11.15657 -10.97297 -10.94537 -10.93499 -10.74390 -10.50869 -10.05638 -9.85239 -9.76102 -9.31351 -9.08424 -8.93781 -8.83573 -8.55053 -8.15393 -7.98371 -6.58832 -4.26982 1.23904 1.25569 3.06018 3.32898 3.43268 3.45970 3.56478 3.72115 3.84918 3.99891 4.05020 4.37805 4.43625 4.69518 4.78036 4.80845 4.87448 4.99675 5.03278 5.05250 5.11292 5.16550 5.25485 5.28452 5.34075 5.40303 5.47977 5.49768 5.59798 5.65325 5.68411 5.79788 5.81968 5.95363 5.99323 6.00470 6.13057 6.16664 6.25062 6.35076 6.41460 6.59843 6.61743 6.68665 6.71069 6.84425 6.93343 7.08367 7.11461 7.27963 7.31936 7.59279 8.18865 8.39498 8.65327 8.90338 9.43555 10.81684 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.003666 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.972358 B = 7634.940862 C = 9199.823846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.243 3.757 4 H 0.048 0.952 5 C -0.610 4.610 6 H 0.061 0.939 7 C 0.037 3.963 8 N -0.904 5.904 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.287 1.287 13 N -0.698 5.698 14 C 0.526 3.474 15 O -0.541 6.541 16 C -0.120 4.120 17 C 0.053 3.947 18 N -0.664 5.664 19 C 0.047 3.953 20 C -0.110 4.110 21 H 0.113 0.887 22 C 0.045 3.955 23 N -0.459 5.459 24 C 0.109 3.891 25 C -0.160 4.160 26 C -0.095 4.095 27 C -0.154 4.154 28 C -0.092 4.092 29 C -0.155 4.155 30 C 0.054 3.946 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.269 0.731 37 H 0.390 0.610 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.343 0.657 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.125 0.875 50 H 0.067 0.933 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.356 10.695 14.596 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.140 3.860 4 H 0.066 0.934 5 C -0.648 4.648 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.537 5.537 9 Si 0.876 3.124 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.214 1.214 13 N -0.345 5.345 14 C 0.310 3.690 15 O -0.419 6.419 16 C -0.125 4.125 17 C -0.077 4.077 18 N -0.290 5.290 19 C -0.083 4.083 20 C -0.131 4.131 21 H 0.132 0.868 22 C -0.081 4.081 23 N -0.172 5.172 24 C 0.010 3.990 25 C -0.180 4.180 26 C -0.113 4.113 27 C -0.173 4.173 28 C -0.110 4.110 29 C -0.176 4.176 30 C -0.073 4.073 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.223 0.777 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.158 0.842 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.143 0.857 50 H 0.085 0.915 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.836 9.988 12.531 20.532 hybrid contribution 0.563 0.853 1.530 1.840 sum -12.273 10.841 14.061 21.584 Atomic orbital electron populations 1.21882 0.97214 0.98977 1.01975 1.22254 0.93948 0.99938 1.01412 1.19241 0.95937 0.88425 0.82432 0.93421 1.22147 0.89665 1.48220 1.04764 0.92047 1.25674 0.97483 0.93572 1.00174 1.70831 1.04424 1.42414 1.36044 0.83957 0.75364 0.77135 0.75904 1.20702 1.19919 1.21355 1.46196 1.14365 1.55858 1.18049 1.19634 0.82744 0.78721 0.87894 1.90645 1.51199 1.59691 1.40382 1.22891 0.96825 0.96656 0.96160 1.23467 0.91025 0.97975 0.95234 1.63598 1.03266 1.08758 1.53377 1.23143 0.97843 0.91080 0.96259 1.23315 0.94165 0.93741 1.01883 0.86841 1.23337 0.88940 0.96173 0.99626 1.62266 1.03944 1.01406 1.49623 1.19208 0.93897 0.92873 0.92996 1.20963 0.99319 0.94830 1.02931 1.20977 0.95712 0.97039 0.97596 1.21043 0.93684 0.99387 1.03168 1.21022 0.99585 0.93147 0.97292 1.21021 0.94334 0.99915 1.02314 1.23317 0.97605 0.86928 0.99416 0.92916 0.94905 0.93386 0.92193 0.92731 0.92128 0.77667 0.89727 0.89249 0.84175 0.90107 0.90311 0.92193 0.89436 0.85888 0.86137 0.86340 0.85960 0.85671 0.91512 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.52 37.16 0.32 -2.43 16 2 C -0.14 -2.94 5.20 -26.73 -0.14 -3.08 16 3 C 0.24 5.62 1.81 -69.08 -0.13 5.50 16 4 H 0.05 1.24 6.07 -51.93 -0.31 0.93 16 5 C -0.61 -16.15 9.09 -34.44 -0.31 -16.46 16 6 H 0.06 1.69 7.95 -52.49 -0.42 1.28 16 7 C 0.04 1.03 5.42 -17.82 -0.10 0.94 16 8 N -0.90 -26.82 13.70 55.43 0.76 -26.06 16 9 Si 1.05 25.34 25.40 -169.99 -4.32 21.02 16 10 H -0.28 -6.40 6.73 56.52 0.38 -6.02 16 11 H -0.27 -6.45 6.38 56.52 0.36 -6.09 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.70 -13.25 4.64 -54.93 -0.26 -13.51 16 14 C 0.53 9.32 5.16 -10.99 -0.06 9.26 16 15 O -0.54 -11.33 12.71 5.56 0.07 -11.26 16 16 C -0.12 -1.57 0.87 -153.12 -0.13 -1.71 16 17 C 0.05 0.60 6.74 -1.35 -0.01 0.59 16 18 N -0.66 -7.32 7.65 -108.57 -0.83 -8.15 16 19 C 0.05 0.46 7.02 -2.25 -0.02 0.45 16 20 C -0.11 -1.32 3.63 -88.08 -0.32 -1.64 16 21 H 0.11 1.63 6.89 -51.93 -0.36 1.27 16 22 C 0.05 0.50 4.70 -2.26 -0.01 0.49 16 23 N -0.46 -6.07 5.49 -166.89 -0.92 -6.98 16 24 C 0.11 1.36 5.64 -83.79 -0.47 0.88 16 25 C -0.16 -1.74 8.90 -39.38 -0.35 -2.09 16 26 C -0.09 -0.91 10.04 -39.61 -0.40 -1.31 16 27 C -0.15 -1.48 10.04 -39.55 -0.40 -1.87 16 28 C -0.09 -0.96 10.04 -39.61 -0.40 -1.36 16 29 C -0.16 -1.86 8.98 -39.38 -0.35 -2.22 16 30 C 0.05 0.68 4.38 -2.25 -0.01 0.67 16 31 H 0.05 1.08 7.87 -51.93 -0.41 0.67 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.89 5.64 -51.93 -0.29 0.60 16 34 H 0.06 1.35 4.44 -51.93 -0.23 1.12 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.27 7.88 8.72 -40.82 -0.36 7.52 16 37 H 0.39 6.68 8.49 -40.82 -0.35 6.33 16 38 H 0.08 1.00 7.76 -51.93 -0.40 0.60 16 39 H 0.09 0.90 7.16 -51.93 -0.37 0.52 16 40 H 0.34 3.93 8.94 -39.29 -0.35 3.58 16 41 H 0.08 0.72 7.20 -51.93 -0.37 0.35 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.57 6.72 -51.93 -0.35 0.22 16 44 H 0.09 0.91 7.65 -51.93 -0.40 0.51 16 45 H 0.12 1.17 6.66 -52.49 -0.35 0.82 16 46 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 47 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 48 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 49 H 0.13 1.49 6.78 -52.49 -0.36 1.13 16 50 H 0.07 0.73 6.79 -51.93 -0.35 0.37 16 51 H 0.09 1.32 7.16 -51.93 -0.37 0.95 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -31.03 383.46 -10.79 -41.82 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -7.79 Total: 12.72 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -3.28 Total: -15.39 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -1.24 Total: -54.69 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -4.32 Total: 21.02 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.03 -10.79 -41.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898587.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.737 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds