Wall clock time and date at job start Wed Apr 1 2020 02:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46719 * 2 1 4 4 H 1.09005 * 109.47524 * 305.41718 * 3 2 1 5 5 C 1.50706 * 109.46933 * 185.42011 * 3 2 1 6 6 H 1.08001 * 120.00060 * 244.74574 * 5 3 2 7 7 C 1.37876 * 119.99907 * 64.75100 * 5 3 2 8 8 N 1.31509 * 120.00022 * 187.31755 * 7 5 3 9 9 Si 1.86802 * 119.99953 * 7.31962 * 7 5 3 10 10 H 1.48501 * 109.46860 * 269.99876 * 9 7 5 11 11 H 1.48496 * 109.47286 * 29.99973 * 9 7 5 12 12 H 1.48507 * 109.47219 * 150.00066 * 9 7 5 13 13 N 1.46497 * 109.47517 * 65.42174 * 3 2 1 14 14 C 1.34773 * 119.99937 * 274.99857 * 13 3 2 15 15 O 1.21280 * 119.99985 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00158 * 179.97438 * 14 13 3 17 17 C 1.54289 * 112.38050 * 297.87312 * 16 14 13 18 18 N 1.50112 * 103.94379 * 261.30831 * 17 16 14 19 19 C 1.48516 * 104.26641 * 320.10515 * 18 17 16 20 20 C 1.54294 * 104.71181 * 39.90832 * 19 18 17 21 21 H 1.09001 * 112.83582 * 98.82764 * 20 19 18 22 22 C 1.54286 * 109.31812 * 224.06058 * 20 19 18 23 23 N 1.48515 * 104.71377 * 135.94283 * 22 20 19 24 24 C 1.39673 * 111.00143 * 200.72018 * 23 22 20 25 25 C 1.38912 * 120.07293 * 329.57040 * 24 23 22 26 26 C 1.38108 * 119.92057 * 179.76396 * 25 24 23 27 27 C 1.38284 * 120.07638 * 0.51134 * 26 25 24 28 28 C 1.38289 * 120.15156 * 359.74059 * 27 26 25 29 29 C 1.38111 * 120.07105 * 0.02562 * 28 27 26 30 30 C 1.48525 * 104.20512 * 320.26984 * 23 22 20 31 31 H 1.09000 * 109.47291 * 60.00231 * 1 2 3 32 32 H 1.09005 * 109.47205 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47354 * 299.99561 * 1 2 3 34 34 H 1.09002 * 109.46689 * 240.00502 * 2 1 3 35 35 H 1.08996 * 109.47388 * 120.00245 * 2 1 3 36 36 H 0.96997 * 120.00312 * 354.94079 * 8 7 5 37 37 H 0.96999 * 120.00037 * 94.99207 * 13 3 2 38 38 H 1.08996 * 110.39071 * 20.24168 * 17 16 14 39 39 H 1.08996 * 110.39253 * 142.63355 * 17 16 14 40 40 H 1.00902 * 111.12678 * 79.74913 * 18 17 16 41 41 H 1.09004 * 110.38751 * 281.10223 * 19 18 17 42 42 H 1.08996 * 110.39110 * 158.71571 * 19 18 17 43 43 H 1.08999 * 110.39358 * 17.13364 * 22 20 19 44 44 H 1.08998 * 110.48339 * 254.79618 * 22 20 19 45 45 H 1.07991 * 120.03920 * 359.97438 * 25 24 23 46 46 H 1.08003 * 119.96118 * 180.25133 * 26 25 24 47 47 H 1.08003 * 119.92535 * 179.71721 * 27 26 25 48 48 H 1.07993 * 119.96567 * 179.97438 * 28 27 26 49 49 H 1.07990 * 120.03283 * 179.97438 * 29 28 27 50 50 H 1.09002 * 110.38411 * 280.92127 * 30 23 22 51 51 H 1.09002 * 110.38729 * 158.53655 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5995 1.9836 -0.8375 5 6 3.5410 1.4447 -0.1342 6 1 4.1547 1.8176 0.6724 7 6 4.1307 0.9706 -1.2868 8 7 5.4375 0.8375 -1.3500 9 14 3.0734 0.5173 -2.7586 10 1 2.6833 -0.9125 -2.6662 11 1 1.8533 1.3636 -2.7710 12 1 3.8434 0.7405 -4.0087 13 7 1.6610 2.0944 1.2560 14 6 0.4446 2.6610 1.3810 15 8 -0.3363 2.6315 0.4534 16 6 0.0546 3.3312 2.6732 17 6 0.0331 2.3477 3.8618 18 7 -1.4171 1.9889 4.0083 19 6 -2.1358 3.2678 3.7767 20 6 -1.3713 3.9428 2.6189 21 1 -1.8521 3.7954 1.6518 22 6 -1.1729 5.4384 2.9416 23 7 0.2379 5.7200 2.5728 24 6 0.7050 6.8665 3.2194 25 6 -0.1740 7.8950 3.5344 26 6 0.2905 9.0252 4.1781 27 6 1.6306 9.1382 4.4996 28 6 2.5094 8.1185 4.1828 29 6 2.0507 6.9835 3.5434 30 6 0.9799 4.5150 3.0236 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 5.9921 1.1411 -0.6144 37 1 2.2856 2.1182 1.9977 38 1 0.6305 1.4648 3.6350 39 1 0.4015 2.8350 4.7646 40 1 -1.6898 1.2930 3.3304 41 1 -2.0992 3.8911 4.6703 42 1 -3.1692 3.0758 3.4885 43 1 -1.3315 5.6220 4.0043 44 1 -1.8504 6.0502 2.3461 45 1 -1.2198 7.8095 3.2792 46 1 -0.3931 9.8235 4.4269 47 1 1.9920 10.0251 4.9989 48 1 3.5555 8.2101 4.4349 49 1 2.7376 6.1877 3.2959 50 1 1.1534 4.5561 4.0989 51 1 1.9256 4.4291 2.4884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220898587.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:39 Heat of formation + Delta-G solvation = -15.008469 kcal Electronic energy + Delta-G solvation = -31566.855276 eV Core-core repulsion = 27657.813732 eV Total energy + Delta-G solvation = -3909.041544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.42781 -40.58753 -39.33125 -37.07547 -36.83472 -34.55830 -33.59154 -32.31490 -32.22768 -31.34722 -29.32316 -28.89428 -27.21182 -24.83597 -24.30990 -23.93253 -23.29998 -22.53460 -21.70301 -21.34844 -20.46579 -19.48208 -18.73213 -18.00422 -17.43501 -17.11893 -16.67193 -16.44751 -16.16791 -15.98395 -15.57366 -15.41257 -15.28795 -14.83431 -14.57646 -14.51345 -14.39676 -14.35877 -14.05443 -13.89942 -13.70134 -13.39815 -13.26836 -12.97617 -12.85182 -12.73870 -12.51384 -12.37347 -12.30152 -12.22969 -12.06827 -11.85314 -11.77226 -11.74755 -11.53330 -11.01704 -10.93263 -10.70363 -10.68332 -9.87884 -9.85788 -9.77691 -8.84113 -8.80968 -6.49670 0.43375 0.46247 1.36697 1.46999 1.63942 1.66594 2.32847 2.36488 2.61781 2.97541 2.99859 3.05081 3.10522 3.42998 3.81132 3.85701 3.93350 3.98559 4.06381 4.13135 4.20954 4.25873 4.29261 4.34552 4.37875 4.42313 4.46698 4.49705 4.55818 4.58897 4.64688 4.70400 4.77316 4.82506 4.86363 4.94694 5.02934 5.04178 5.14211 5.15804 5.21360 5.24903 5.48911 5.49296 5.50728 5.61080 5.62505 5.64291 5.80027 5.86182 5.97090 6.19716 6.27951 6.48604 6.79750 7.24604 7.39770 8.58279 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.003666 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.972358 B = 7634.940862 C = 9199.823846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.134 4.134 3 C 0.250 3.750 4 H 0.019 0.981 5 C -0.604 4.604 6 H 0.040 0.960 7 C -0.008 4.008 8 N -0.934 5.934 9 Si 1.078 2.922 10 H -0.255 1.255 11 H -0.270 1.270 12 H -0.287 1.287 13 N -0.699 5.699 14 C 0.526 3.474 15 O -0.573 6.573 16 C -0.113 4.113 17 C 0.059 3.941 18 N -0.664 5.664 19 C 0.055 3.945 20 C -0.108 4.108 21 H 0.087 0.913 22 C 0.051 3.949 23 N -0.484 5.484 24 C 0.091 3.909 25 C -0.167 4.167 26 C -0.094 4.094 27 C -0.155 4.155 28 C -0.099 4.099 29 C -0.176 4.176 30 C 0.061 3.939 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.258 0.742 37 H 0.399 0.601 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.339 0.661 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.135 0.865 46 H 0.148 0.852 47 H 0.143 0.857 48 H 0.137 0.863 49 H 0.115 0.885 50 H 0.088 0.912 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.566 11.537 16.652 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.173 4.173 3 C 0.145 3.855 4 H 0.037 0.963 5 C -0.642 4.642 6 H 0.059 0.941 7 C -0.208 4.208 8 N -0.570 5.570 9 Si 0.902 3.098 10 H -0.180 1.180 11 H -0.195 1.195 12 H -0.214 1.214 13 N -0.347 5.347 14 C 0.312 3.688 15 O -0.454 6.454 16 C -0.119 4.119 17 C -0.071 4.071 18 N -0.289 5.289 19 C -0.075 4.075 20 C -0.129 4.129 21 H 0.105 0.895 22 C -0.075 4.075 23 N -0.198 5.198 24 C -0.007 4.007 25 C -0.188 4.188 26 C -0.113 4.113 27 C -0.174 4.174 28 C -0.118 4.118 29 C -0.197 4.197 30 C -0.066 4.066 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.234 0.766 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.154 0.846 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.153 0.847 46 H 0.166 0.834 47 H 0.161 0.839 48 H 0.155 0.845 49 H 0.133 0.867 50 H 0.106 0.894 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.055 10.837 14.631 23.625 hybrid contribution 1.274 0.723 0.941 1.741 sum -13.781 11.561 15.572 23.792 Atomic orbital electron populations 1.21754 0.95185 1.00588 1.01395 1.22142 0.95687 0.98140 1.01282 1.18866 0.93413 0.89761 0.83461 0.96319 1.22355 0.91580 1.46536 1.03759 0.94150 1.26770 0.97684 0.93672 1.02658 1.70925 1.05343 1.44722 1.36005 0.83560 0.74289 0.78521 0.73459 1.18028 1.19509 1.21354 1.46026 1.15437 1.56226 1.16992 1.20348 0.81530 0.77707 0.89188 1.90628 1.51958 1.60684 1.42086 1.22810 0.97821 0.97032 0.94191 1.23494 0.91456 0.97278 0.94893 1.63649 1.02969 1.09178 1.53070 1.23192 0.98012 0.90410 0.95891 1.23262 0.93216 0.94778 1.01614 0.89493 1.23361 0.87922 0.95274 1.00897 1.62282 1.05034 1.01774 1.50733 1.19345 0.94321 0.93150 0.93923 1.21185 0.99776 0.94822 1.02968 1.21342 0.96260 0.97174 0.96504 1.21395 0.93667 0.99776 1.02526 1.21275 1.00692 0.92906 0.96915 1.21101 0.94400 1.00602 1.03609 1.23223 0.96383 0.86763 1.00225 0.94504 0.92098 0.92991 0.93192 0.91944 0.93285 0.76635 0.90328 0.87249 0.84565 0.88329 0.88971 0.90123 0.88997 0.84696 0.83448 0.83886 0.84537 0.86744 0.89433 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 8.52 71.98 0.61 -4.29 16 2 C -0.13 -5.67 5.20 30.59 0.16 -5.51 16 3 C 0.25 11.74 1.81 44.25 0.08 11.82 16 4 H 0.02 1.01 6.07 -2.38 -0.01 0.99 16 5 C -0.60 -32.91 9.09 25.60 0.23 -32.68 16 6 H 0.04 2.32 7.95 -2.91 -0.02 2.30 16 7 C -0.01 -0.45 5.42 84.66 0.46 0.01 16 8 N -0.93 -56.97 13.70 21.45 0.29 -56.67 16 9 Si 1.08 51.59 25.40 68.60 1.74 53.34 16 10 H -0.26 -11.13 6.73 99.48 0.67 -10.46 16 11 H -0.27 -12.65 6.38 99.48 0.63 -12.01 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 13 N -0.70 -27.01 4.64 -446.10 -2.07 -29.08 16 14 C 0.53 18.76 5.16 87.66 0.45 19.21 16 15 O -0.57 -24.36 12.71 -3.03 -0.04 -24.40 16 16 C -0.11 -2.88 0.87 -51.28 -0.04 -2.93 16 17 C 0.06 1.22 6.74 86.11 0.58 1.80 16 18 N -0.66 -13.01 7.65 -497.42 -3.81 -16.82 16 19 C 0.05 0.93 7.02 86.43 0.61 1.53 16 20 C -0.11 -2.43 3.63 -9.15 -0.03 -2.46 16 21 H 0.09 2.48 6.89 -2.39 -0.02 2.46 16 22 C 0.05 1.03 4.70 86.43 0.41 1.44 16 23 N -0.48 -12.51 5.49 -681.92 -3.74 -16.25 16 24 C 0.09 2.18 5.64 38.21 0.22 2.39 16 25 C -0.17 -3.28 8.90 22.40 0.20 -3.09 16 26 C -0.09 -1.55 10.04 22.25 0.22 -1.33 16 27 C -0.15 -2.58 10.04 22.29 0.22 -2.35 16 28 C -0.10 -1.95 10.04 22.25 0.22 -1.72 16 29 C -0.18 -4.19 8.98 22.40 0.20 -3.99 16 30 C 0.06 1.51 4.38 86.42 0.38 1.89 16 31 H 0.04 1.47 7.87 -2.39 -0.02 1.45 16 32 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.05 1.87 5.64 -2.39 -0.01 1.85 16 34 H 0.05 2.21 4.44 -2.39 -0.01 2.20 16 35 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.26 15.73 8.72 -92.71 -0.81 14.92 16 37 H 0.40 13.96 8.49 -92.71 -0.79 13.17 16 38 H 0.08 1.74 7.76 -2.39 -0.02 1.72 16 39 H 0.11 1.88 7.16 -2.39 -0.02 1.86 16 40 H 0.34 7.12 8.94 -89.69 -0.80 6.32 16 41 H 0.10 1.37 7.20 -2.38 -0.02 1.36 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.29 6.72 -2.39 -0.02 1.27 16 44 H 0.09 1.75 7.65 -2.39 -0.02 1.73 16 45 H 0.14 2.23 6.66 -2.92 -0.02 2.21 16 46 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 47 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 48 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 49 H 0.11 2.84 6.78 -2.92 -0.02 2.82 16 50 H 0.09 1.78 6.79 -2.39 -0.02 1.77 16 51 H 0.07 2.06 7.16 -2.39 -0.02 2.04 16 Total: -1.00 -68.90 383.46 -3.22 -72.11 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -0.77 Total: 38.02 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 5.18 Total: -20.24 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -9.33 Total: -118.83 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.04 Total: -24.40 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.74 Total: 53.34 kcal Total: -68.90 -3.22 -72.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898587.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.106 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds