Wall clock time and date at job start Wed Apr 1 2020 02:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47118 * 2 1 4 4 H 1.09005 * 109.46795 * 303.87107 * 3 2 1 5 5 C 1.50705 * 109.47318 * 183.87540 * 3 2 1 6 6 H 1.08002 * 119.99443 * 305.17490 * 5 3 2 7 7 C 1.37873 * 120.00173 * 125.17075 * 5 3 2 8 8 N 1.31514 * 120.00093 * 354.74920 * 7 5 3 9 9 Si 1.86801 * 119.99833 * 174.75491 * 7 5 3 10 10 H 1.48496 * 109.47234 * 59.99907 * 9 7 5 11 11 H 1.48501 * 109.47222 * 299.99610 * 9 7 5 12 12 H 1.48496 * 109.46971 * 180.02562 * 9 7 5 13 13 N 1.46895 * 109.47326 * 63.87086 * 3 2 1 14 14 C 1.48658 * 110.99809 * 69.87657 * 13 3 2 15 15 C 1.54639 * 104.63056 * 158.51530 * 14 13 3 16 16 H 1.09006 * 110.39840 * 95.21848 * 15 14 13 17 17 C 1.52998 * 110.39702 * 217.50407 * 15 14 13 18 18 C 1.53248 * 104.67531 * 336.30362 * 15 14 13 19 19 C 1.53604 * 111.08339 * 239.54719 * 18 15 14 20 20 C 1.54714 * 101.51002 * 214.99049 * 19 18 15 21 21 N 1.46879 * 105.51724 * 24.52526 * 20 19 18 22 22 C 1.39951 * 124.37125 * 163.17564 * 21 20 19 23 23 C 1.39280 * 120.48765 * 359.69868 * 22 21 20 24 24 C 1.38507 * 118.35961 * 179.75490 * 23 22 21 25 25 C 1.38274 * 119.23822 * 0.54003 * 24 23 22 26 26 N 1.31860 * 120.91249 * 359.70129 * 25 24 23 27 27 C 1.31816 * 121.80176 * 0.02562 * 26 25 24 28 28 C 1.34758 * 111.25701 * 343.17552 * 21 20 19 29 29 O 1.21290 * 125.13438 * 181.00786 * 28 21 20 30 30 C 1.48799 * 111.00430 * 185.49134 * 13 3 2 31 31 H 1.09002 * 109.46842 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46864 * 299.99893 * 1 2 3 33 33 H 1.09001 * 109.47199 * 60.00367 * 1 2 3 34 34 H 1.09006 * 109.47195 * 240.00134 * 2 1 3 35 35 H 1.09001 * 109.47674 * 119.99871 * 2 1 3 36 36 H 0.96994 * 119.99658 * 5.24922 * 8 7 5 37 37 H 1.09003 * 110.40406 * 277.30289 * 14 13 3 38 38 H 1.08996 * 110.40723 * 39.61037 * 14 13 3 39 39 H 1.08995 * 109.47126 * 65.13619 * 17 15 14 40 40 H 1.08997 * 109.47222 * 185.13721 * 17 15 14 41 41 H 1.09000 * 109.47196 * 305.13634 * 17 15 14 42 42 H 1.09003 * 111.01746 * 333.04602 * 19 18 15 43 43 H 1.08991 * 111.02072 * 96.89524 * 19 18 15 44 44 H 1.08997 * 110.23584 * 143.53127 * 20 19 18 45 45 H 1.08996 * 110.23311 * 265.42952 * 20 19 18 46 46 H 1.08004 * 120.82073 * 0.02562 * 23 22 21 47 47 H 1.07997 * 120.38352 * 180.25609 * 24 23 22 48 48 H 1.07997 * 119.54505 * 179.72261 * 25 24 23 49 49 H 1.07997 * 119.66973 * 180.02562 * 27 26 25 50 50 H 1.09002 * 110.45643 * 320.52890 * 30 13 3 51 51 H 1.09006 * 110.45543 * 83.08772 * 30 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6210 1.9760 -0.8533 5 6 3.5440 1.4436 -0.0960 6 1 4.1311 0.8881 0.6203 7 6 4.1702 2.1537 -1.0983 8 7 3.4555 2.7449 -2.0306 9 14 6.0339 2.2760 -1.1318 10 1 6.6175 0.9147 -1.2382 11 1 6.5102 2.9226 0.1173 12 1 6.4557 3.0887 -2.3010 13 7 1.6282 2.1075 1.2434 14 6 2.3657 1.5576 2.4111 15 6 2.2688 2.6617 3.4895 16 1 1.4332 2.4645 4.1611 17 6 3.5762 2.7521 4.2791 18 6 2.0304 3.9542 2.7015 19 6 3.1471 4.9757 2.9644 20 6 2.3631 6.3087 2.9185 21 7 0.9757 5.9604 3.2517 22 6 0.0033 6.8841 3.6513 23 6 0.3171 8.2364 3.7637 24 6 -0.6804 9.1128 4.1578 25 6 -1.9419 8.6194 4.4355 26 7 -2.2055 7.3322 4.3242 27 6 -1.2870 6.4652 3.9472 28 6 0.7600 4.6364 3.1228 29 8 -0.2998 4.0797 3.3177 30 6 1.9921 3.5502 1.2224 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.4874 2.7461 -1.9718 37 1 1.8922 0.6408 2.7623 38 1 3.4070 1.3703 2.1490 39 1 4.3784 3.0788 3.6175 40 1 3.4609 3.4690 5.0919 41 1 3.8207 1.7727 4.6904 42 1 3.5963 4.8199 3.9453 43 1 3.9031 4.9389 2.1802 44 1 2.7634 7.0070 3.6535 45 1 2.4150 6.7423 1.9198 46 1 1.3126 8.5935 3.5447 47 1 -0.4741 10.1687 4.2516 48 1 -2.7222 9.2977 4.7475 49 1 -1.5408 5.4185 3.8671 50 1 2.9711 3.6895 0.7640 51 1 1.2355 4.1262 0.6895 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:15 Heat of formation + Delta-G solvation = 20.236703 kcal Electronic energy + Delta-G solvation = -31930.919081 eV Core-core repulsion = 28023.405882 eV Total energy + Delta-G solvation = -3907.513199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.62121 -39.92665 -38.03991 -36.60642 -35.19099 -32.67928 -32.15781 -31.82186 -31.25612 -29.19909 -28.21892 -26.37317 -25.42488 -24.28470 -23.86643 -23.27809 -22.42372 -21.37568 -20.38357 -19.49506 -18.62825 -17.61706 -17.10199 -16.80171 -16.39728 -15.86657 -15.53988 -14.99121 -14.49479 -14.35125 -14.05162 -13.89910 -13.74885 -13.66984 -13.50160 -13.36626 -13.27317 -13.11041 -12.75726 -12.57933 -12.28968 -12.16314 -11.89867 -11.59343 -11.44875 -11.16642 -10.93293 -10.78909 -10.71932 -10.69032 -10.47436 -10.30103 -10.19712 -10.17922 -9.83889 -9.77207 -9.67787 -9.41396 -9.32582 -8.99037 -8.56756 -8.13847 -7.11923 -6.48015 -4.24781 0.98225 1.10892 2.64072 2.65695 3.28129 3.32393 3.50153 3.77582 4.19805 4.35621 4.37133 4.55800 4.64846 4.68876 4.72443 4.82729 4.94709 5.04915 5.14846 5.16626 5.22777 5.30170 5.45927 5.52478 5.60119 5.74697 5.81595 5.83848 5.90762 5.94884 5.97175 6.03679 6.06765 6.15850 6.17763 6.27143 6.32713 6.35440 6.42842 6.59347 6.69279 6.76109 6.79542 6.81370 6.88088 6.93463 7.04055 7.22984 7.34298 7.85281 7.89664 7.92846 8.12188 8.29978 8.37741 8.71197 9.49801 10.85912 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.003631 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.751370 B = 7708.793620 C = 8349.587477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C 0.170 3.830 4 H 0.055 0.945 5 C -0.618 4.618 6 H 0.053 0.947 7 C 0.031 3.969 8 N -0.906 5.906 9 Si 1.058 2.942 10 H -0.287 1.287 11 H -0.287 1.287 12 H -0.282 1.282 13 N -0.504 5.504 14 C 0.043 3.957 15 C -0.075 4.075 16 H 0.077 0.923 17 C -0.144 4.144 18 C -0.088 4.088 19 C -0.133 4.133 20 C 0.096 3.904 21 N -0.562 5.562 22 C 0.128 3.872 23 C -0.124 4.124 24 C -0.143 4.143 25 C 0.057 3.943 26 N -0.457 5.457 27 C 0.062 3.938 28 C 0.538 3.462 29 O -0.490 6.490 30 C 0.071 3.929 31 H 0.030 0.970 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.271 0.729 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.154 0.846 49 H 0.185 0.815 50 H 0.078 0.922 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 10.297 12.454 16.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C 0.064 3.936 4 H 0.073 0.927 5 C -0.657 4.657 6 H 0.071 0.929 7 C -0.175 4.175 8 N -0.543 5.543 9 Si 0.886 3.114 10 H -0.214 1.214 11 H -0.214 1.214 12 H -0.208 1.208 13 N -0.227 5.227 14 C -0.086 4.086 15 C -0.095 4.095 16 H 0.095 0.905 17 C -0.202 4.202 18 C -0.092 4.092 19 C -0.171 4.171 20 C -0.026 4.026 21 N -0.286 5.286 22 C 0.031 3.969 23 C -0.152 4.152 24 C -0.164 4.164 25 C -0.100 4.100 26 N -0.165 5.165 27 C -0.098 4.098 28 C 0.328 3.672 29 O -0.362 6.362 30 C -0.058 4.058 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.171 0.829 49 H 0.201 0.799 50 H 0.096 0.904 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.191 10.141 11.852 15.644 hybrid contribution 0.538 0.035 0.464 0.711 sum -0.653 10.176 12.315 15.989 Atomic orbital electron populations 1.21746 0.97725 0.98997 1.01610 1.21487 0.93531 0.98674 0.99966 1.19699 0.94188 0.91006 0.88723 0.92688 1.22319 0.92315 1.34008 1.17103 0.92906 1.25779 1.06575 0.93192 0.91960 1.70855 1.08460 1.42987 1.31958 0.83694 0.74811 0.76666 0.76194 1.21382 1.21355 1.20772 1.65996 1.51383 1.00660 1.04698 1.23079 0.99619 0.95642 0.90235 1.21690 0.97909 0.92950 0.96918 0.90494 1.21980 0.97344 1.01438 0.99399 1.21453 0.91752 0.95944 1.00027 1.23033 0.97481 0.91523 1.05026 1.22379 0.79362 0.99103 1.01784 1.46099 1.11084 1.07324 1.64100 1.19017 0.90285 0.89765 0.97875 1.21231 1.00712 0.91149 1.02154 1.21941 0.93908 1.00599 0.99924 1.22714 0.95938 0.92274 0.99117 1.67777 1.34561 1.03246 1.10946 1.23584 0.87273 1.01755 0.97152 1.20832 0.90551 0.80779 0.75017 1.90585 1.28601 1.68701 1.48339 1.22623 1.01484 0.92123 0.89583 0.95117 0.92171 0.94088 0.93211 0.93862 0.91557 0.92066 0.91262 0.91638 0.93084 0.92359 0.88516 0.87992 0.89908 0.90010 0.84591 0.84578 0.82863 0.79884 0.90434 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.79 37.16 0.36 -2.40 16 2 C -0.10 -2.10 5.38 -26.73 -0.14 -2.25 16 3 C 0.17 3.94 2.09 -68.86 -0.14 3.80 16 4 H 0.06 1.43 5.62 -51.93 -0.29 1.14 16 5 C -0.62 -15.25 6.11 -34.44 -0.21 -15.46 16 6 H 0.05 1.32 6.43 -52.49 -0.34 0.98 16 7 C 0.03 0.80 5.01 -17.82 -0.09 0.71 16 8 N -0.91 -24.96 13.65 55.43 0.76 -24.20 16 9 Si 1.06 22.85 29.91 -169.99 -5.08 17.77 16 10 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.50 -10.52 4.76 -223.58 -1.07 -11.59 16 14 C 0.04 0.80 5.10 -1.99 -0.01 0.79 16 15 C -0.08 -1.19 3.29 -89.63 -0.29 -1.48 16 16 H 0.08 1.28 7.47 -51.93 -0.39 0.90 16 17 C -0.14 -1.81 7.69 37.16 0.29 -1.53 16 18 C -0.09 -1.39 0.83 -155.26 -0.13 -1.52 16 19 C -0.13 -1.61 5.08 -25.52 -0.13 -1.74 16 20 C 0.10 1.04 6.44 -2.93 -0.02 1.02 16 21 N -0.56 -7.87 3.15 -112.25 -0.35 -8.22 16 22 C 0.13 1.77 6.63 -83.54 -0.55 1.22 16 23 C -0.12 -1.33 9.51 -39.10 -0.37 -1.70 16 24 C -0.14 -1.36 10.10 -39.47 -0.40 -1.76 16 25 C 0.06 0.64 11.18 -17.53 -0.20 0.44 16 26 N -0.46 -6.69 10.35 -13.09 -0.14 -6.83 16 27 C 0.06 0.97 10.48 -17.33 -0.18 0.79 16 28 C 0.54 9.04 6.52 -11.22 -0.07 8.97 16 29 O -0.49 -9.63 14.40 5.55 0.08 -9.55 16 30 C 0.07 1.39 5.52 -2.58 -0.01 1.37 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.20 7.72 -51.93 -0.40 0.80 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.04 0.90 7.11 -51.93 -0.37 0.53 16 36 H 0.27 7.56 6.25 -40.82 -0.26 7.31 16 37 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 38 H 0.07 1.39 5.26 -51.93 -0.27 1.12 16 39 H 0.06 0.83 6.97 -51.93 -0.36 0.47 16 40 H 0.05 0.55 7.16 -51.93 -0.37 0.18 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.10 1.00 5.23 -51.93 -0.27 0.73 16 43 H 0.10 1.26 7.46 -51.93 -0.39 0.87 16 44 H 0.08 0.66 7.51 -51.93 -0.39 0.27 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.14 1.11 6.99 -52.48 -0.37 0.74 16 47 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 48 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 49 H 0.18 3.21 5.24 -52.49 -0.28 2.93 16 50 H 0.08 1.67 5.91 -51.93 -0.31 1.36 16 51 H 0.06 1.19 7.85 -51.93 -0.41 0.79 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -29.61 384.98 -9.92 -39.53 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.61 Total: 8.01 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.31 Total: -10.73 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.80 Total: -50.84 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.08 Total: 17.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.61 -9.92 -39.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.769 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds