Wall clock time and date at job start Wed Apr 1 2020 02:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47118 * 2 1 4 4 H 1.09005 * 109.46795 * 303.87107 * 3 2 1 5 5 C 1.50705 * 109.47318 * 183.87540 * 3 2 1 6 6 H 1.08002 * 119.99443 * 305.17490 * 5 3 2 7 7 C 1.37873 * 120.00173 * 125.17075 * 5 3 2 8 8 N 1.31514 * 120.00093 * 354.74920 * 7 5 3 9 9 Si 1.86801 * 119.99833 * 174.75491 * 7 5 3 10 10 H 1.48496 * 109.47234 * 59.99907 * 9 7 5 11 11 H 1.48501 * 109.47222 * 299.99610 * 9 7 5 12 12 H 1.48496 * 109.46971 * 180.02562 * 9 7 5 13 13 N 1.46895 * 109.47326 * 63.87086 * 3 2 1 14 14 C 1.48658 * 110.99809 * 69.87657 * 13 3 2 15 15 C 1.54639 * 104.63056 * 158.51530 * 14 13 3 16 16 H 1.09006 * 110.39840 * 95.21848 * 15 14 13 17 17 C 1.52998 * 110.39702 * 217.50407 * 15 14 13 18 18 C 1.53248 * 104.67531 * 336.30362 * 15 14 13 19 19 C 1.53604 * 111.08339 * 239.54719 * 18 15 14 20 20 C 1.54714 * 101.51002 * 214.99049 * 19 18 15 21 21 N 1.46879 * 105.51724 * 24.52526 * 20 19 18 22 22 C 1.39951 * 124.37125 * 163.17564 * 21 20 19 23 23 C 1.39280 * 120.48765 * 359.69868 * 22 21 20 24 24 C 1.38507 * 118.35961 * 179.75490 * 23 22 21 25 25 C 1.38274 * 119.23822 * 0.54003 * 24 23 22 26 26 N 1.31860 * 120.91249 * 359.70129 * 25 24 23 27 27 C 1.31816 * 121.80176 * 0.02562 * 26 25 24 28 28 C 1.34758 * 111.25701 * 343.17552 * 21 20 19 29 29 O 1.21290 * 125.13438 * 181.00786 * 28 21 20 30 30 C 1.48799 * 111.00430 * 185.49134 * 13 3 2 31 31 H 1.09002 * 109.46842 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46864 * 299.99893 * 1 2 3 33 33 H 1.09001 * 109.47199 * 60.00367 * 1 2 3 34 34 H 1.09006 * 109.47195 * 240.00134 * 2 1 3 35 35 H 1.09001 * 109.47674 * 119.99871 * 2 1 3 36 36 H 0.96994 * 119.99658 * 5.24922 * 8 7 5 37 37 H 1.09003 * 110.40406 * 277.30289 * 14 13 3 38 38 H 1.08996 * 110.40723 * 39.61037 * 14 13 3 39 39 H 1.08995 * 109.47126 * 65.13619 * 17 15 14 40 40 H 1.08997 * 109.47222 * 185.13721 * 17 15 14 41 41 H 1.09000 * 109.47196 * 305.13634 * 17 15 14 42 42 H 1.09003 * 111.01746 * 333.04602 * 19 18 15 43 43 H 1.08991 * 111.02072 * 96.89524 * 19 18 15 44 44 H 1.08997 * 110.23584 * 143.53127 * 20 19 18 45 45 H 1.08996 * 110.23311 * 265.42952 * 20 19 18 46 46 H 1.08004 * 120.82073 * 0.02562 * 23 22 21 47 47 H 1.07997 * 120.38352 * 180.25609 * 24 23 22 48 48 H 1.07997 * 119.54505 * 179.72261 * 25 24 23 49 49 H 1.07997 * 119.66973 * 180.02562 * 27 26 25 50 50 H 1.09002 * 110.45643 * 320.52890 * 30 13 3 51 51 H 1.09006 * 110.45543 * 83.08772 * 30 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6210 1.9760 -0.8533 5 6 3.5440 1.4436 -0.0960 6 1 4.1311 0.8881 0.6203 7 6 4.1702 2.1537 -1.0983 8 7 3.4555 2.7449 -2.0306 9 14 6.0339 2.2760 -1.1318 10 1 6.6175 0.9147 -1.2382 11 1 6.5102 2.9226 0.1173 12 1 6.4557 3.0887 -2.3010 13 7 1.6282 2.1075 1.2434 14 6 2.3657 1.5576 2.4111 15 6 2.2688 2.6617 3.4895 16 1 1.4332 2.4645 4.1611 17 6 3.5762 2.7521 4.2791 18 6 2.0304 3.9542 2.7015 19 6 3.1471 4.9757 2.9644 20 6 2.3631 6.3087 2.9185 21 7 0.9757 5.9604 3.2517 22 6 0.0033 6.8841 3.6513 23 6 0.3171 8.2364 3.7637 24 6 -0.6804 9.1128 4.1578 25 6 -1.9419 8.6194 4.4355 26 7 -2.2055 7.3322 4.3242 27 6 -1.2870 6.4652 3.9472 28 6 0.7600 4.6364 3.1228 29 8 -0.2998 4.0797 3.3177 30 6 1.9921 3.5502 1.2224 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.4874 2.7461 -1.9718 37 1 1.8922 0.6408 2.7623 38 1 3.4070 1.3703 2.1490 39 1 4.3784 3.0788 3.6175 40 1 3.4609 3.4690 5.0919 41 1 3.8207 1.7727 4.6904 42 1 3.5963 4.8199 3.9453 43 1 3.9031 4.9389 2.1802 44 1 2.7634 7.0070 3.6535 45 1 2.4150 6.7423 1.9198 46 1 1.3126 8.5935 3.5447 47 1 -0.4741 10.1687 4.2516 48 1 -2.7222 9.2977 4.7475 49 1 -1.5408 5.4185 3.8671 50 1 2.9711 3.6895 0.7640 51 1 1.2355 4.1262 0.6895 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:13 Heat of formation + Delta-G solvation = 2.050962 kcal Electronic energy + Delta-G solvation = -31931.707674 eV Core-core repulsion = 28023.405882 eV Total energy + Delta-G solvation = -3908.301792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.79156 -40.98535 -39.48576 -37.86860 -36.67652 -34.18540 -33.55820 -32.96968 -32.61547 -30.32258 -29.47095 -27.98669 -26.82997 -25.69204 -24.99958 -24.60418 -23.68949 -22.80248 -21.55189 -21.20785 -19.89952 -18.77589 -18.51143 -18.08200 -17.45959 -16.93189 -16.85401 -16.65104 -15.70251 -15.64366 -15.44520 -15.26830 -15.12404 -14.93730 -14.82388 -14.57456 -14.48816 -14.34706 -14.20318 -13.92978 -13.50086 -13.29603 -13.27135 -12.82345 -12.77431 -12.61877 -12.53638 -12.38478 -12.29258 -12.02209 -11.95707 -11.74585 -11.59011 -11.50740 -11.36079 -11.18068 -10.95228 -10.77115 -10.63499 -10.51968 -10.44347 -9.16575 -8.89491 -8.51278 -6.29983 0.01143 0.22049 1.42219 1.55409 1.60575 1.61510 1.80150 2.58038 2.83217 3.03255 3.18476 3.27878 3.52833 3.60441 3.64746 3.80131 3.82931 3.90679 3.98724 4.08880 4.20623 4.24675 4.31935 4.37527 4.45383 4.52261 4.55341 4.57755 4.64580 4.73390 4.76678 4.81356 4.91285 4.93511 4.94993 4.99751 5.03782 5.07177 5.09401 5.09671 5.16873 5.28162 5.28704 5.31918 5.45970 5.47471 5.54076 5.75516 5.89118 6.00307 6.05999 6.38122 6.54182 6.66058 6.83897 7.02462 7.52469 8.79685 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.003631 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.751370 B = 7708.793620 C = 8349.587477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 C 0.173 3.827 4 H 0.019 0.981 5 C -0.612 4.612 6 H 0.052 0.948 7 C -0.012 4.012 8 N -0.935 5.935 9 Si 1.101 2.899 10 H -0.280 1.280 11 H -0.258 1.258 12 H -0.291 1.291 13 N -0.515 5.515 14 C 0.045 3.955 15 C -0.069 4.069 16 H 0.065 0.935 17 C -0.138 4.138 18 C -0.086 4.086 19 C -0.126 4.126 20 C 0.093 3.907 21 N -0.558 5.558 22 C 0.107 3.893 23 C -0.112 4.112 24 C -0.127 4.127 25 C 0.053 3.947 26 N -0.490 5.490 27 C 0.029 3.971 28 C 0.529 3.471 29 O -0.533 6.533 30 C 0.080 3.920 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.037 0.963 35 H 0.048 0.952 36 H 0.255 0.745 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.101 0.899 44 H 0.127 0.873 45 H 0.086 0.914 46 H 0.172 0.828 47 H 0.183 0.817 48 H 0.185 0.815 49 H 0.150 0.850 50 H 0.058 0.942 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 13.086 14.806 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.133 4.133 3 C 0.066 3.934 4 H 0.037 0.963 5 C -0.651 4.651 6 H 0.070 0.930 7 C -0.212 4.212 8 N -0.573 5.573 9 Si 0.923 3.077 10 H -0.206 1.206 11 H -0.182 1.182 12 H -0.217 1.217 13 N -0.239 5.239 14 C -0.083 4.083 15 C -0.089 4.089 16 H 0.083 0.917 17 C -0.195 4.195 18 C -0.090 4.090 19 C -0.163 4.163 20 C -0.027 4.027 21 N -0.281 5.281 22 C 0.010 3.990 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.105 4.105 26 N -0.199 5.199 27 C -0.129 4.129 28 C 0.319 3.681 29 O -0.409 6.409 30 C -0.049 4.049 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.120 0.880 44 H 0.144 0.856 45 H 0.105 0.895 46 H 0.189 0.811 47 H 0.200 0.800 48 H 0.202 0.798 49 H 0.167 0.833 50 H 0.076 0.924 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.092 12.939 14.231 19.265 hybrid contribution -0.323 -0.762 -0.253 0.865 sum 0.769 12.177 13.979 18.555 Atomic orbital electron populations 1.21610 0.96084 1.00478 1.00733 1.21409 0.95002 0.97427 0.99503 1.19559 0.93562 0.91660 0.88619 0.96310 1.22474 0.93006 1.33119 1.16542 0.93015 1.27020 1.10057 0.92608 0.91527 1.70974 1.07620 1.45205 1.33525 0.83152 0.70404 0.77051 0.77052 1.20572 1.18231 1.21724 1.65873 1.52002 1.01544 1.04449 1.23070 0.98283 0.96716 0.90257 1.21644 0.99622 0.91626 0.96007 0.91699 1.21949 0.95010 1.02858 0.99642 1.21377 0.93420 0.97218 0.96937 1.23071 0.96165 0.90636 1.06450 1.22664 0.77383 0.99152 1.03531 1.46096 1.12384 1.06353 1.63218 1.19125 0.89559 0.91176 0.99123 1.21687 1.02645 0.89403 1.00315 1.22452 0.92468 1.02598 0.97163 1.23383 0.97922 0.91290 0.97926 1.67698 1.35089 1.04938 1.12141 1.23163 0.88962 1.00887 0.99933 1.21003 0.90103 0.82069 0.74925 1.90569 1.30034 1.69936 1.50366 1.22419 0.99163 0.91109 0.92211 0.92381 0.93099 0.94851 0.94453 0.93288 0.93269 0.92423 0.92354 0.91221 0.90443 0.91586 0.85766 0.88016 0.85553 0.89543 0.81065 0.79955 0.79822 0.83291 0.92361 0.95156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 9.79 71.98 0.70 -4.53 16 2 C -0.09 -4.21 5.38 30.59 0.16 -4.05 16 3 C 0.17 8.44 2.09 44.17 0.09 8.53 16 4 H 0.02 1.06 5.62 -2.38 -0.01 1.04 16 5 C -0.61 -30.96 6.11 25.60 0.16 -30.80 16 6 H 0.05 2.60 6.43 -2.91 -0.02 2.58 16 7 C -0.01 -0.63 5.01 84.65 0.42 -0.20 16 8 N -0.93 -53.54 13.65 21.45 0.29 -53.25 16 9 Si 1.10 45.68 29.91 68.60 2.05 47.73 16 10 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 12 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 13 N -0.52 -22.65 4.76 -861.29 -4.10 -26.75 16 14 C 0.04 1.71 5.10 86.52 0.44 2.15 16 15 C -0.07 -2.17 3.29 -10.15 -0.03 -2.21 16 16 H 0.06 2.20 7.47 -2.38 -0.02 2.18 16 17 C -0.14 -3.10 7.69 71.98 0.55 -2.54 16 18 C -0.09 -2.72 0.83 -52.67 -0.04 -2.77 16 19 C -0.13 -2.73 5.08 31.38 0.16 -2.57 16 20 C 0.09 1.74 6.44 86.89 0.56 2.30 16 21 N -0.56 -15.14 3.15 -627.44 -1.98 -17.12 16 22 C 0.11 2.85 6.63 38.24 0.25 3.11 16 23 C -0.11 -1.97 9.51 22.58 0.21 -1.76 16 24 C -0.13 -1.84 10.10 22.34 0.23 -1.62 16 25 C 0.05 1.05 11.18 84.70 0.95 2.00 16 26 N -0.49 -14.42 10.35 -195.32 -2.02 -16.44 16 27 C 0.03 0.94 10.48 84.84 0.89 1.83 16 28 C 0.53 18.34 6.52 87.51 0.57 18.91 16 29 O -0.53 -22.57 14.40 -3.06 -0.04 -22.61 16 30 C 0.08 3.29 5.52 86.06 0.47 3.77 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 2.10 7.72 -2.39 -0.02 2.08 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.05 2.08 7.11 -2.39 -0.02 2.07 16 36 H 0.26 15.17 6.25 -92.71 -0.58 14.59 16 37 H 0.06 2.20 7.69 -2.39 -0.02 2.18 16 38 H 0.06 2.36 5.26 -2.39 -0.01 2.34 16 39 H 0.07 1.54 6.97 -2.39 -0.02 1.52 16 40 H 0.08 1.37 7.16 -2.39 -0.02 1.35 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.12 2.03 5.23 -2.39 -0.01 2.02 16 43 H 0.10 2.27 7.46 -2.39 -0.02 2.26 16 44 H 0.13 1.31 7.51 -2.39 -0.02 1.30 16 45 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.17 1.76 6.99 -2.91 -0.02 1.74 16 47 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 48 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 49 H 0.15 5.81 5.24 -2.91 -0.02 5.79 16 50 H 0.06 2.61 5.91 -2.39 -0.01 2.60 16 51 H 0.03 1.37 7.85 -2.38 -0.02 1.35 16 Total: -1.00 -71.81 384.98 2.08 -69.73 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 1.13 Total: 29.18 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 6.75 Total: -10.46 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -7.81 Total: -113.56 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.04 Total: -22.61 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.05 Total: 47.73 kcal Total: -71.81 2.08 -69.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.781 kcal (2) G-P(sol) polarization free energy of solvation -71.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds