Wall clock time and date at job start Wed Apr 1 2020 02:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47121 * 2 1 4 4 H 1.09009 * 109.47361 * 54.99564 * 3 2 1 5 5 C 1.50698 * 109.47235 * 174.99474 * 3 2 1 6 6 H 1.08002 * 119.99805 * 119.99437 * 5 3 2 7 7 C 1.37873 * 120.00145 * 300.00193 * 5 3 2 8 8 N 1.31507 * 120.00037 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99991 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47066 * 89.99947 * 9 7 5 11 11 H 1.48505 * 109.46816 * 210.00133 * 9 7 5 12 12 H 1.48495 * 109.46708 * 329.99601 * 9 7 5 13 13 N 1.46900 * 109.47171 * 294.99616 * 3 2 1 14 14 C 1.46856 * 111.00281 * 174.99998 * 13 3 2 15 15 C 1.53117 * 109.47118 * 186.25389 * 14 13 3 16 16 C 1.52709 * 109.29569 * 301.52016 * 15 14 13 17 17 C 1.54114 * 109.81578 * 177.72433 * 16 15 14 18 18 C 1.54706 * 101.71146 * 94.30895 * 17 16 15 19 19 H 1.09000 * 110.48285 * 265.64381 * 18 17 16 20 20 C 1.50700 * 110.48635 * 143.13277 * 18 17 16 21 21 C 1.38645 * 120.79272 * 299.72539 * 20 18 17 22 22 C 1.38208 * 119.16516 * 179.79438 * 21 20 18 23 23 N 1.31861 * 120.75983 * 0.48600 * 22 21 20 24 24 C 1.31873 * 121.73109 * 359.73748 * 23 22 21 25 25 C 1.38203 * 120.76032 * 0.02866 * 24 23 22 26 26 C 1.51325 * 104.21021 * 24.45209 * 18 17 16 27 27 O 1.21284 * 124.94720 * 163.83608 * 26 18 17 28 28 N 1.34532 * 110.09891 * 343.80569 * 26 18 17 29 29 C 1.52701 * 110.18870 * 56.62000 * 16 15 14 30 30 C 1.46848 * 111.00036 * 299.32672 * 13 3 2 31 31 H 1.09001 * 109.47542 * 300.00185 * 1 2 3 32 32 H 1.09005 * 109.46814 * 60.00194 * 1 2 3 33 33 H 1.08998 * 109.47020 * 179.97438 * 1 2 3 34 34 H 1.08992 * 109.47131 * 239.99441 * 2 1 3 35 35 H 1.09005 * 109.46814 * 119.99806 * 2 1 3 36 36 H 0.97007 * 120.00179 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.46842 * 66.24857 * 14 13 3 38 38 H 1.09003 * 109.46866 * 306.24952 * 14 13 3 39 39 H 1.09000 * 109.49651 * 181.57647 * 15 14 13 40 40 H 1.08997 * 109.52651 * 61.48404 * 15 14 13 41 41 H 1.09002 * 110.98833 * 336.19181 * 17 16 15 42 42 H 1.09004 * 110.98332 * 212.42363 * 17 16 15 43 43 H 1.08003 * 120.41780 * 359.97438 * 21 20 18 44 44 H 1.07997 * 119.61590 * 180.20528 * 22 21 20 45 45 H 1.07996 * 119.62016 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.41581 * 179.97438 * 25 24 23 47 47 H 0.97007 * 124.41295 * 179.83958 * 28 26 18 48 48 H 1.08999 * 109.49799 * 63.32873 * 29 16 15 49 49 H 1.09005 * 109.50010 * 183.43279 * 29 16 15 50 50 H 1.08996 * 109.47287 * 293.74927 * 30 13 3 51 51 H 1.09002 * 109.46583 * 53.74943 * 30 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1240 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0050 0.8801 1.3814 10 1 6.4427 2.1130 2.0839 11 1 6.4390 -0.3110 2.1548 12 1 6.6130 0.8395 0.0272 13 7 1.6514 2.0992 -1.2553 14 6 2.0207 3.5205 -1.2419 15 6 1.4640 4.2043 -2.4937 16 6 2.0191 3.5115 -3.7362 17 6 1.4217 4.1539 -5.0034 18 6 2.5033 5.1991 -5.3654 19 1 2.2519 6.1710 -4.9407 20 6 2.6574 5.3024 -6.8609 21 6 3.0343 4.2005 -7.6133 22 6 3.1614 4.3320 -8.9833 23 7 2.9380 5.4900 -9.5732 24 6 2.5825 6.5598 -8.8890 25 6 2.4310 6.5029 -7.5165 26 6 3.7692 4.6559 -4.7389 27 8 4.8926 5.0203 -5.0148 28 7 3.4668 3.7105 -3.8308 29 6 1.6837 2.0221 -3.7033 30 6 2.2334 1.4081 -2.4129 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.8291 -0.0603 2.9504 37 1 3.1067 3.6136 -1.2295 38 1 1.6051 3.9955 -0.3532 39 1 1.7615 5.2529 -2.4982 40 1 0.3762 4.1346 -2.4936 41 1 0.4696 4.6372 -4.7843 42 1 1.3092 3.4170 -5.7987 43 1 3.2235 3.2507 -7.1353 44 1 3.4514 3.4777 -9.5768 45 1 2.4084 7.4912 -9.4071 46 1 2.1400 7.3826 -6.9616 47 1 4.1223 3.2236 -3.3072 48 1 0.6021 1.8919 -3.7363 49 1 2.1366 1.5281 -4.5630 50 1 3.3179 1.5153 -2.3927 51 1 1.9721 0.3506 -2.3737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:43 Heat of formation + Delta-G solvation = -1.311353 kcal Electronic energy + Delta-G solvation = -31228.003590 eV Core-core repulsion = 27319.555997 eV Total energy + Delta-G solvation = -3908.447593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.42938 -39.99998 -38.29298 -36.47425 -34.37942 -33.16718 -31.67075 -31.43739 -30.80093 -30.54103 -29.55696 -26.77712 -25.18886 -23.74532 -23.17855 -23.13564 -22.53845 -21.58308 -20.55398 -19.57691 -18.87187 -17.25547 -17.04382 -16.53005 -16.23740 -15.79891 -15.58097 -15.25737 -14.63027 -14.43250 -14.29883 -14.20044 -13.86485 -13.81014 -13.67217 -13.55701 -13.17267 -12.92254 -12.88990 -12.71833 -12.08290 -11.99987 -11.78149 -11.69960 -11.46483 -11.34796 -11.19939 -10.88437 -10.77641 -10.69962 -10.47940 -10.38301 -10.20588 -9.88508 -9.74316 -9.70552 -9.52346 -9.37258 -9.35514 -9.18344 -8.97159 -8.43472 -7.23873 -6.06907 -4.20988 0.92450 0.98712 2.53822 3.21283 3.29231 3.31876 3.32570 3.58311 4.07025 4.23461 4.26504 4.32662 4.36662 4.58521 4.73961 4.80008 4.88814 4.91881 4.95162 5.07094 5.14671 5.18187 5.39033 5.50503 5.56096 5.58819 5.63942 5.74429 5.81939 5.86934 5.90996 5.99106 6.05616 6.12310 6.22601 6.38009 6.40325 6.46262 6.50403 6.60028 6.61859 6.69027 6.87732 7.01945 7.08877 7.11545 7.24485 7.52154 7.67851 7.75148 7.87243 8.05572 8.21955 8.25352 8.36916 8.88326 9.47404 10.92039 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017108 B = 0.002919 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.280947 B = 9589.647859 C =10403.748518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.216 3.784 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.532 5.532 14 C 0.064 3.936 15 C -0.119 4.119 16 C 0.161 3.839 17 C -0.114 4.114 18 C -0.089 4.089 19 H 0.118 0.882 20 C -0.015 4.015 21 C -0.160 4.160 22 C 0.101 3.899 23 N -0.489 5.489 24 C 0.099 3.901 25 C -0.164 4.164 26 C 0.526 3.474 27 O -0.532 6.532 28 N -0.709 5.709 29 C -0.117 4.117 30 C 0.058 3.942 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.025 0.975 34 H 0.033 0.967 35 H 0.092 0.908 36 H 0.262 0.738 37 H 0.036 0.964 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.132 0.868 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.136 0.864 47 H 0.415 0.585 48 H 0.081 0.919 49 H 0.063 0.937 50 H 0.034 0.966 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 7.814 -15.868 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.109 3.891 4 H 0.057 0.943 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.132 4.132 8 N -0.522 5.522 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.256 5.256 14 C -0.065 4.065 15 C -0.158 4.158 16 C 0.074 3.926 17 C -0.152 4.152 18 C -0.110 4.110 19 H 0.136 0.864 20 C -0.024 4.024 21 C -0.180 4.180 22 C -0.055 4.055 23 N -0.198 5.198 24 C -0.058 4.058 25 C -0.184 4.184 26 C 0.311 3.689 27 O -0.408 6.408 28 N -0.365 5.365 29 C -0.155 4.155 30 C -0.070 4.070 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.150 0.850 44 H 0.173 0.827 45 H 0.173 0.827 46 H 0.153 0.847 47 H 0.256 0.744 48 H 0.100 0.900 49 H 0.082 0.918 50 H 0.052 0.948 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.324 7.990 -16.827 20.016 hybrid contribution 2.221 -0.264 1.623 2.763 sum -5.103 7.727 -15.204 17.802 Atomic orbital electron populations 1.21708 0.98782 0.98445 1.00594 1.21639 0.92299 0.99191 1.02005 1.19260 0.93005 0.91125 0.85675 0.94349 1.21676 0.92799 1.38354 1.05517 0.92835 1.24885 0.97727 0.94940 0.95697 1.69860 1.34825 1.38113 1.09361 0.86722 0.86238 0.77635 0.78171 1.20711 1.21140 1.20052 1.62397 1.58110 1.00921 1.04186 1.21818 0.98443 0.90335 0.95925 1.21999 1.01283 0.98343 0.94163 1.20823 0.79650 0.97032 0.95070 1.22851 0.97903 0.97111 0.97302 1.21040 0.95857 1.02115 0.91997 0.86385 1.19748 0.95075 0.93615 0.93947 1.22000 1.00927 0.99608 0.95499 1.22718 0.95302 0.95411 0.92100 1.67661 1.11553 0.99578 1.41008 1.22736 0.94898 0.97016 0.91184 1.22042 1.02181 0.98000 0.96150 1.20489 0.89580 0.79382 0.79476 1.90759 1.24046 1.61705 1.64326 1.46388 1.08807 1.40075 1.41180 1.21923 1.02363 0.92463 0.98799 1.21937 0.96977 0.98826 0.89275 0.94202 0.93373 0.95624 0.94823 0.88969 0.92824 0.94550 0.91484 0.92098 0.90166 0.88626 0.89545 0.85020 0.82696 0.82697 0.84651 0.74381 0.90021 0.91825 0.94757 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.80 37.16 0.36 -2.21 16 2 C -0.11 -2.47 5.06 -26.73 -0.14 -2.60 16 3 C 0.22 4.83 1.75 -68.87 -0.12 4.71 16 4 H 0.04 0.98 8.08 -51.92 -0.42 0.56 16 5 C -0.54 -13.53 7.20 -34.44 -0.25 -13.78 16 6 H 0.05 1.34 5.85 -52.49 -0.31 1.03 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -23.84 11.29 55.43 0.63 -23.21 16 9 Si 0.88 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.53 -9.58 4.08 -227.97 -0.93 -10.52 16 14 C 0.06 1.05 5.01 -3.79 -0.02 1.04 16 15 C -0.12 -1.45 4.97 -26.82 -0.13 -1.59 16 16 C 0.16 1.81 0.72 -131.57 -0.10 1.72 16 17 C -0.11 -0.99 5.63 -25.25 -0.14 -1.13 16 18 C -0.09 -0.90 3.19 -91.72 -0.29 -1.19 16 19 H 0.12 1.03 8.00 -51.93 -0.42 0.61 16 20 C -0.02 -0.16 4.79 -104.32 -0.50 -0.66 16 21 C -0.16 -1.69 8.61 -39.44 -0.34 -2.03 16 22 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 23 N -0.49 -5.53 10.36 -13.25 -0.14 -5.67 16 24 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 25 C -0.16 -1.51 9.78 -39.44 -0.39 -1.90 16 26 C 0.53 7.32 7.41 -10.79 -0.08 7.24 16 27 O -0.53 -9.62 17.86 5.55 0.10 -9.52 16 28 N -0.71 -9.39 5.01 -47.22 -0.24 -9.63 16 29 C -0.12 -1.41 4.98 -26.82 -0.13 -1.55 16 30 C 0.06 0.95 4.69 -3.79 -0.02 0.94 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.84 7.75 -51.93 -0.40 0.44 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.03 0.72 6.04 -51.93 -0.31 0.40 16 35 H 0.09 2.31 5.95 -51.93 -0.31 2.00 16 36 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.04 0.68 6.56 -51.93 -0.34 0.34 16 38 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 41 H 0.10 0.67 7.85 -51.93 -0.41 0.26 16 42 H 0.09 0.71 7.00 -51.93 -0.36 0.35 16 43 H 0.13 1.30 7.93 -52.48 -0.42 0.88 16 44 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 46 H 0.14 0.91 8.03 -52.48 -0.42 0.49 16 47 H 0.42 6.15 7.74 -40.82 -0.32 5.83 16 48 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.03 0.63 5.61 -51.93 -0.29 0.33 16 51 H 0.08 1.33 5.91 -51.93 -0.31 1.02 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -29.72 390.35 -10.45 -40.17 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.97 Total: 6.63 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -2.77 Total: -9.67 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.68 Total: -49.03 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.10 Total: -9.52 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.72 -10.45 -40.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.861 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds