Wall clock time and date at job start Wed Apr 1 2020 02:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46880 * 2 1 4 4 H 1.08999 * 109.47204 * 320.25042 * 3 2 1 5 5 C 1.50694 * 109.47002 * 200.25184 * 3 2 1 6 6 H 1.08002 * 120.00029 * 243.25670 * 5 3 2 7 7 C 1.37879 * 120.00038 * 63.25660 * 5 3 2 8 8 N 1.31512 * 119.99685 * 196.82681 * 7 5 3 9 9 Si 1.86792 * 120.00088 * 16.83079 * 7 5 3 10 10 H 1.48507 * 109.47262 * 84.79203 * 9 7 5 11 11 H 1.48498 * 109.47478 * 204.79395 * 9 7 5 12 12 H 1.48507 * 109.47227 * 324.79286 * 9 7 5 13 13 N 1.46904 * 109.46917 * 80.25207 * 3 2 1 14 14 C 1.48585 * 110.99891 * 295.79722 * 13 3 2 15 15 C 1.55090 * 103.34296 * 200.62209 * 14 13 3 16 16 C 1.53980 * 102.71041 * 36.83985 * 15 14 13 17 17 C 1.52306 * 121.18463 * 122.43255 * 16 15 14 18 18 C 1.52294 * 121.20712 * 194.42550 * 16 15 14 19 19 H 1.09005 * 117.51393 * 356.88387 * 18 16 15 20 20 C 1.50701 * 117.51890 * 141.95511 * 18 16 15 21 21 O 1.21282 * 119.99700 * 88.73343 * 20 18 16 22 22 N 1.34778 * 120.00010 * 268.74270 * 20 18 16 23 23 C 1.46495 * 119.99981 * 179.97438 * 22 20 18 24 24 C 1.50704 * 109.47238 * 179.97438 * 23 22 20 25 25 C 1.38673 * 120.41661 * 89.99741 * 24 23 22 26 26 C 1.38623 * 118.42097 * 179.97438 * 25 24 23 27 27 C 1.38229 * 119.15930 * 0.02562 * 26 25 24 28 28 N 1.31858 * 120.76532 * 0.25490 * 27 26 25 29 29 C 1.31883 * 121.72298 * 359.47458 * 28 27 26 30 30 C 1.48099 * 110.99756 * 178.34459 * 13 3 2 31 31 H 1.09001 * 109.46621 * 170.54513 * 1 2 3 32 32 H 1.08997 * 109.47127 * 290.53406 * 1 2 3 33 33 H 1.08995 * 109.47021 * 50.54039 * 1 2 3 34 34 H 1.08991 * 109.47266 * 240.00106 * 2 1 3 35 35 H 1.08995 * 109.47300 * 119.99721 * 2 1 3 36 36 H 0.97008 * 120.00093 * 180.02562 * 8 7 5 37 37 H 1.08997 * 110.65113 * 319.09009 * 14 13 3 38 38 H 1.09004 * 110.64285 * 82.16320 * 14 13 3 39 39 H 1.08996 * 110.76502 * 278.53613 * 15 14 13 40 40 H 1.09007 * 110.76556 * 155.14236 * 15 14 13 41 41 H 1.08999 * 117.52199 * 3.20019 * 17 16 15 42 42 H 1.08997 * 117.51684 * 218.07095 * 17 16 15 43 43 H 0.96996 * 120.00293 * 359.97438 * 22 20 18 44 44 H 1.09007 * 109.47552 * 59.99447 * 23 22 20 45 45 H 1.09001 * 109.47089 * 299.99494 * 23 22 20 46 46 H 1.08002 * 120.78977 * 359.96190 * 25 24 23 47 47 H 1.08002 * 120.42117 * 180.02562 * 26 25 24 48 48 H 1.08004 * 119.61719 * 179.97438 * 27 26 25 49 49 H 1.08002 * 119.61876 * 180.26478 * 29 28 27 50 50 H 1.09003 * 110.00205 * 26.42985 * 30 13 3 51 51 H 1.08995 * 110.03506 * 265.09661 * 30 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.4161 2.0485 -0.6571 5 6 3.4641 1.4719 -0.4918 6 1 4.2552 1.8040 0.1642 7 6 3.7572 1.0747 -1.7792 8 7 4.9955 0.7815 -2.1110 9 14 2.3954 0.9530 -3.0520 10 1 2.1680 2.2875 -3.6627 11 1 2.7896 -0.0139 -4.1079 12 1 1.1459 0.4889 -2.3973 13 7 1.9821 1.9824 1.3650 14 6 0.5787 2.0630 1.8467 15 6 0.6540 3.1012 2.9963 16 6 1.6875 4.1144 2.4707 17 6 1.3383 5.5888 2.3158 18 6 2.3272 5.1411 3.3960 19 1 1.9880 5.1660 4.4316 20 6 3.7844 5.4596 3.1812 21 8 4.1056 6.3392 2.4104 22 7 4.7306 4.7670 3.8455 23 6 6.1472 5.0762 3.6363 24 6 6.9916 4.1664 4.4908 25 6 7.4274 2.9455 3.9984 26 6 8.2024 2.1414 4.8197 27 6 8.5123 2.5801 6.0933 28 7 8.0758 3.7450 6.5304 29 6 7.3409 4.5379 5.7751 30 6 2.5061 3.3668 1.4109 31 1 -0.3632 -1.0137 -0.1688 32 1 -0.3633 0.3605 0.9623 33 1 -0.3633 0.6531 -0.7934 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 5.2019 0.5024 -3.0169 37 1 -0.0803 2.4153 1.0532 38 1 0.2456 1.0959 2.2234 39 1 1.0044 2.6340 3.9166 40 1 -0.3134 3.5799 3.1487 41 1 0.3483 5.9088 2.6407 42 1 1.7419 6.1136 1.4499 43 1 4.4737 4.0637 4.4621 44 1 6.3374 6.1134 3.9125 45 1 6.4003 4.9276 2.5865 46 1 7.1690 2.6285 2.9988 47 1 8.5595 1.1844 4.4689 48 1 9.1153 1.9594 6.7396 49 1 7.0051 5.4870 6.1661 50 1 2.3827 3.8446 0.4390 51 1 3.5594 3.3583 1.6909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255170480.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:44 Heat of formation + Delta-G solvation = 38.456038 kcal Electronic energy + Delta-G solvation = -30542.937811 eV Core-core repulsion = 26636.214661 eV Total energy + Delta-G solvation = -3906.723149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.54783 -40.05695 -38.54282 -36.17810 -35.17101 -33.05788 -32.52614 -31.82175 -31.58731 -29.88994 -27.12970 -26.82451 -25.94901 -23.77212 -23.71334 -22.85907 -21.93944 -21.09475 -20.24666 -19.58388 -18.99812 -17.34916 -16.97962 -16.75829 -16.55458 -16.06578 -15.77319 -15.21883 -14.96659 -14.64999 -14.31804 -14.10460 -13.95345 -13.66155 -13.30400 -13.13808 -13.05358 -12.91783 -12.67298 -12.53916 -12.42207 -12.16338 -11.97949 -11.81569 -11.72561 -11.44104 -11.33924 -10.84823 -10.79841 -10.39443 -10.24082 -10.12629 -10.06178 -9.90870 -9.82808 -9.65857 -9.51226 -9.44776 -9.18652 -9.08787 -9.06526 -8.47849 -7.49616 -6.13162 -4.05915 0.82304 1.11343 2.65275 3.14137 3.26684 3.35784 3.39019 3.69653 3.87190 4.21425 4.40180 4.49644 4.58408 4.59465 4.69837 4.80956 4.86081 4.88002 5.03538 5.10823 5.11143 5.21549 5.26869 5.46236 5.55462 5.57325 5.63501 5.69738 5.80305 5.88506 5.90254 5.95386 5.99814 6.06948 6.11102 6.12489 6.16640 6.20801 6.33423 6.38542 6.42671 6.49839 6.59818 6.63134 6.68474 6.83691 6.93673 7.24352 7.51097 7.62224 7.75388 7.87315 7.96692 8.30034 8.59652 8.97698 9.53475 10.99571 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.003504 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.077298 B = 7989.417931 C = 9373.449258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.114 4.114 3 C 0.186 3.814 4 H -0.005 1.005 5 C -0.513 4.513 6 H 0.077 0.923 7 C 0.078 3.922 8 N -0.889 5.889 9 Si 0.855 3.145 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.497 5.497 14 C 0.031 3.969 15 C -0.089 4.089 16 C -0.109 4.109 17 C -0.136 4.136 18 C -0.180 4.180 19 H 0.124 0.876 20 C 0.551 3.449 21 O -0.537 6.537 22 N -0.722 5.722 23 C 0.166 3.834 24 C -0.158 4.158 25 C -0.049 4.049 26 C -0.171 4.171 27 C 0.101 3.899 28 N -0.490 5.490 29 C 0.114 3.886 30 C 0.090 3.910 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.263 0.737 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.403 0.597 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.144 0.856 47 H 0.139 0.861 48 H 0.156 0.844 49 H 0.155 0.845 50 H 0.051 0.949 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 4.817 15.507 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.152 4.152 3 C 0.078 3.922 4 H 0.012 0.988 5 C -0.551 4.551 6 H 0.095 0.905 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.682 3.318 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.222 5.222 14 C -0.097 4.097 15 C -0.127 4.127 16 C -0.111 4.111 17 C -0.173 4.173 18 C -0.201 4.201 19 H 0.142 0.858 20 C 0.337 3.663 21 O -0.413 6.413 22 N -0.374 5.374 23 C 0.042 3.958 24 C -0.161 4.161 25 C -0.076 4.076 26 C -0.191 4.191 27 C -0.056 4.056 28 N -0.198 5.198 29 C -0.044 4.044 30 C -0.038 4.038 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.237 0.763 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.161 0.839 47 H 0.157 0.843 48 H 0.173 0.827 49 H 0.172 0.828 50 H 0.069 0.931 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.346 5.293 15.941 16.851 hybrid contribution -1.297 -0.255 -1.990 2.390 sum -2.644 5.038 13.951 15.066 Atomic orbital electron populations 1.22323 0.98697 1.00171 1.01283 1.21893 0.92468 0.99207 1.01673 1.19832 0.97164 0.91110 0.84106 0.98777 1.20857 0.91285 1.44878 0.98066 0.90534 1.24845 0.95077 0.94186 0.98328 1.69974 1.19011 1.44141 1.19530 0.87341 0.84422 0.78138 0.81914 1.20671 1.21503 1.17395 1.64870 1.13803 1.17792 1.25696 1.23493 0.92375 0.98103 0.95767 1.22102 0.96575 0.95087 0.98916 1.22073 0.99510 0.90644 0.98841 1.23008 0.98253 0.96455 0.99591 1.22194 0.91378 1.08169 0.98338 0.85778 1.19637 0.86514 0.80822 0.79310 1.90702 1.82821 1.31868 1.35929 1.45933 1.05381 1.39209 1.46872 1.20085 0.79221 0.97254 0.99247 1.20904 1.01571 0.96907 0.96682 1.21769 0.93021 0.92261 1.00537 1.22242 0.99808 1.01500 0.95503 1.22835 0.96313 0.92509 0.93963 1.67730 1.10420 1.04957 1.36707 1.22702 0.93266 0.98610 0.89817 1.22035 0.98046 0.88299 0.95386 0.94275 0.92238 0.93789 0.92114 0.92067 0.92699 0.94280 0.89937 0.90552 0.91486 0.88101 0.87562 0.76282 0.90413 0.89986 0.83859 0.84337 0.82717 0.82820 0.93073 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 8.72 37.16 0.32 -2.59 16 2 C -0.11 -2.41 4.48 -26.73 -0.12 -2.53 16 3 C 0.19 4.23 0.94 -68.86 -0.06 4.16 16 4 H -0.01 -0.12 6.49 -51.93 -0.34 -0.46 16 5 C -0.51 -13.93 8.43 -34.44 -0.29 -14.22 16 6 H 0.08 2.28 7.52 -52.49 -0.39 1.89 16 7 C 0.08 2.20 5.17 -17.82 -0.09 2.10 16 8 N -0.89 -26.50 13.96 55.43 0.77 -25.72 16 9 Si 0.86 20.82 25.80 -169.99 -4.38 16.43 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.25 -5.67 4.93 56.52 0.28 -5.39 16 13 N -0.50 -9.76 5.10 -223.97 -1.14 -10.90 16 14 C 0.03 0.48 4.55 -1.79 -0.01 0.47 16 15 C -0.09 -1.13 6.83 -25.12 -0.17 -1.30 16 16 C -0.11 -1.57 2.44 -154.52 -0.38 -1.94 16 17 C -0.14 -1.77 9.78 -27.01 -0.26 -2.04 16 18 C -0.18 -2.26 6.06 -92.06 -0.56 -2.82 16 19 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 20 C 0.55 8.06 6.33 -10.98 -0.07 7.99 16 21 O -0.54 -9.85 16.46 5.56 0.09 -9.76 16 22 N -0.72 -8.75 5.55 -61.47 -0.34 -9.09 16 23 C 0.17 1.93 5.82 -5.19 -0.03 1.90 16 24 C -0.16 -1.69 5.27 -104.48 -0.55 -2.24 16 25 C -0.05 -0.55 9.86 -39.28 -0.39 -0.94 16 26 C -0.17 -1.68 10.11 -39.44 -0.40 -2.08 16 27 C 0.10 0.98 11.18 -17.54 -0.20 0.79 16 28 N -0.49 -5.54 10.36 -13.25 -0.14 -5.67 16 29 C 0.11 1.17 10.86 -17.55 -0.19 0.98 16 30 C 0.09 1.71 5.10 -2.97 -0.02 1.70 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.91 4.53 -51.93 -0.24 0.67 16 33 H 0.04 0.79 7.39 -51.93 -0.38 0.40 16 34 H 0.06 1.39 5.30 -51.93 -0.28 1.11 16 35 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.04 0.63 7.46 -51.93 -0.39 0.24 16 38 H 0.08 1.22 6.25 -51.93 -0.32 0.89 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.11 1.59 7.82 -51.93 -0.41 1.18 16 43 H 0.40 4.25 8.46 -40.82 -0.35 3.90 16 44 H 0.08 0.85 8.09 -51.92 -0.42 0.43 16 45 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 46 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 47 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 48 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 49 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 50 H 0.05 1.10 7.71 -51.93 -0.40 0.70 16 51 H 0.07 1.53 7.01 -51.93 -0.36 1.17 16 LS Contribution 399.80 15.07 6.02 6.02 Total: -1.00 -32.49 399.80 -10.75 -43.25 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -8.18 Total: 8.05 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -3.46 Total: -12.61 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.85 Total: -51.39 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.38 Total: 16.43 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.49 -10.75 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170480.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.701 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds