Wall clock time and date at job start Wed Apr 1 2020 02:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46880 * 2 1 4 4 H 1.08999 * 109.47204 * 320.25042 * 3 2 1 5 5 C 1.50694 * 109.47002 * 200.25184 * 3 2 1 6 6 H 1.08002 * 120.00029 * 243.25670 * 5 3 2 7 7 C 1.37879 * 120.00038 * 63.25660 * 5 3 2 8 8 N 1.31512 * 119.99685 * 196.82681 * 7 5 3 9 9 Si 1.86792 * 120.00088 * 16.83079 * 7 5 3 10 10 H 1.48507 * 109.47262 * 84.79203 * 9 7 5 11 11 H 1.48498 * 109.47478 * 204.79395 * 9 7 5 12 12 H 1.48507 * 109.47227 * 324.79286 * 9 7 5 13 13 N 1.46904 * 109.46917 * 80.25207 * 3 2 1 14 14 C 1.48585 * 110.99891 * 295.79722 * 13 3 2 15 15 C 1.55090 * 103.34296 * 200.62209 * 14 13 3 16 16 C 1.53980 * 102.71041 * 36.83985 * 15 14 13 17 17 C 1.52306 * 121.18463 * 122.43255 * 16 15 14 18 18 C 1.52294 * 121.20712 * 194.42550 * 16 15 14 19 19 H 1.09005 * 117.51393 * 356.88387 * 18 16 15 20 20 C 1.50701 * 117.51890 * 141.95511 * 18 16 15 21 21 O 1.21282 * 119.99700 * 88.73343 * 20 18 16 22 22 N 1.34778 * 120.00010 * 268.74270 * 20 18 16 23 23 C 1.46495 * 119.99981 * 179.97438 * 22 20 18 24 24 C 1.50704 * 109.47238 * 179.97438 * 23 22 20 25 25 C 1.38673 * 120.41661 * 89.99741 * 24 23 22 26 26 C 1.38623 * 118.42097 * 179.97438 * 25 24 23 27 27 C 1.38229 * 119.15930 * 0.02562 * 26 25 24 28 28 N 1.31858 * 120.76532 * 0.25490 * 27 26 25 29 29 C 1.31883 * 121.72298 * 359.47458 * 28 27 26 30 30 C 1.48099 * 110.99756 * 178.34459 * 13 3 2 31 31 H 1.09001 * 109.46621 * 170.54513 * 1 2 3 32 32 H 1.08997 * 109.47127 * 290.53406 * 1 2 3 33 33 H 1.08995 * 109.47021 * 50.54039 * 1 2 3 34 34 H 1.08991 * 109.47266 * 240.00106 * 2 1 3 35 35 H 1.08995 * 109.47300 * 119.99721 * 2 1 3 36 36 H 0.97008 * 120.00093 * 180.02562 * 8 7 5 37 37 H 1.08997 * 110.65113 * 319.09009 * 14 13 3 38 38 H 1.09004 * 110.64285 * 82.16320 * 14 13 3 39 39 H 1.08996 * 110.76502 * 278.53613 * 15 14 13 40 40 H 1.09007 * 110.76556 * 155.14236 * 15 14 13 41 41 H 1.08999 * 117.52199 * 3.20019 * 17 16 15 42 42 H 1.08997 * 117.51684 * 218.07095 * 17 16 15 43 43 H 0.96996 * 120.00293 * 359.97438 * 22 20 18 44 44 H 1.09007 * 109.47552 * 59.99447 * 23 22 20 45 45 H 1.09001 * 109.47089 * 299.99494 * 23 22 20 46 46 H 1.08002 * 120.78977 * 359.96190 * 25 24 23 47 47 H 1.08002 * 120.42117 * 180.02562 * 26 25 24 48 48 H 1.08004 * 119.61719 * 179.97438 * 27 26 25 49 49 H 1.08002 * 119.61876 * 180.26478 * 29 28 27 50 50 H 1.09003 * 110.00205 * 26.42985 * 30 13 3 51 51 H 1.08995 * 110.03506 * 265.09661 * 30 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.4161 2.0485 -0.6571 5 6 3.4641 1.4719 -0.4918 6 1 4.2552 1.8040 0.1642 7 6 3.7572 1.0747 -1.7792 8 7 4.9955 0.7815 -2.1110 9 14 2.3954 0.9530 -3.0520 10 1 2.1680 2.2875 -3.6627 11 1 2.7896 -0.0139 -4.1079 12 1 1.1459 0.4889 -2.3973 13 7 1.9821 1.9824 1.3650 14 6 0.5787 2.0630 1.8467 15 6 0.6540 3.1012 2.9963 16 6 1.6875 4.1144 2.4707 17 6 1.3383 5.5888 2.3158 18 6 2.3272 5.1411 3.3960 19 1 1.9880 5.1660 4.4316 20 6 3.7844 5.4596 3.1812 21 8 4.1056 6.3392 2.4104 22 7 4.7306 4.7670 3.8455 23 6 6.1472 5.0762 3.6363 24 6 6.9916 4.1664 4.4908 25 6 7.4274 2.9455 3.9984 26 6 8.2024 2.1414 4.8197 27 6 8.5123 2.5801 6.0933 28 7 8.0758 3.7450 6.5304 29 6 7.3409 4.5379 5.7751 30 6 2.5061 3.3668 1.4109 31 1 -0.3632 -1.0137 -0.1688 32 1 -0.3633 0.3605 0.9623 33 1 -0.3633 0.6531 -0.7934 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 5.2019 0.5024 -3.0169 37 1 -0.0803 2.4153 1.0532 38 1 0.2456 1.0959 2.2234 39 1 1.0044 2.6340 3.9166 40 1 -0.3134 3.5799 3.1487 41 1 0.3483 5.9088 2.6407 42 1 1.7419 6.1136 1.4499 43 1 4.4737 4.0637 4.4621 44 1 6.3374 6.1134 3.9125 45 1 6.4003 4.9276 2.5865 46 1 7.1690 2.6285 2.9988 47 1 8.5595 1.1844 4.4689 48 1 9.1153 1.9594 6.7396 49 1 7.0051 5.4870 6.1661 50 1 2.3827 3.8446 0.4390 51 1 3.5594 3.3583 1.6909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170480.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:43 Heat of formation + Delta-G solvation = 15.145293 kcal Electronic energy + Delta-G solvation = -30543.948641 eV Core-core repulsion = 26636.214661 eV Total energy + Delta-G solvation = -3907.733979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.59409 -41.07744 -39.87966 -37.56366 -36.29778 -34.81658 -33.61752 -33.42165 -32.49394 -31.31165 -28.52894 -28.16462 -27.34502 -24.85978 -24.57239 -24.50385 -22.86125 -22.47132 -21.51915 -21.18390 -20.20818 -18.88297 -18.22636 -17.90905 -17.50206 -17.33203 -17.10743 -16.66555 -16.12201 -15.85732 -15.82037 -15.18168 -15.04936 -14.82734 -14.72400 -14.60746 -14.18670 -14.09766 -14.04407 -14.00721 -13.79138 -13.49291 -13.30502 -13.22362 -12.95242 -12.76238 -12.62825 -12.56116 -12.20090 -12.01577 -11.81037 -11.68424 -11.35908 -11.23044 -11.05049 -10.98135 -10.83844 -10.63999 -10.63237 -10.51327 -10.17697 -10.06273 -9.10624 -8.33748 -6.29982 -0.01317 0.24065 1.29010 1.32798 1.42020 1.47488 2.12327 2.31553 2.74744 2.87044 2.98777 3.24462 3.39596 3.46523 3.66162 3.76381 3.82613 3.86360 3.94253 3.96020 4.02440 4.05468 4.41081 4.41587 4.43618 4.44232 4.51455 4.54611 4.63962 4.65208 4.73199 4.74834 4.81747 4.87412 4.88112 4.94630 5.04906 5.11412 5.13679 5.17375 5.21264 5.25864 5.26158 5.30394 5.32870 5.33237 5.49285 5.67932 5.80691 6.01974 6.23013 6.45509 6.66010 6.73856 6.92826 7.17629 7.33029 8.82901 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.003504 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.077298 B = 7989.417931 C = 9373.449258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.112 4.112 3 C 0.192 3.808 4 H -0.015 1.015 5 C -0.514 4.514 6 H 0.029 0.971 7 C 0.022 3.978 8 N -0.939 5.939 9 Si 0.917 3.083 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.219 1.219 13 N -0.510 5.510 14 C 0.025 3.975 15 C -0.073 4.073 16 C -0.116 4.116 17 C -0.131 4.131 18 C -0.164 4.164 19 H 0.169 0.831 20 C 0.540 3.460 21 O -0.584 6.584 22 N -0.710 5.710 23 C 0.169 3.831 24 C -0.158 4.158 25 C -0.068 4.068 26 C -0.171 4.171 27 C 0.103 3.897 28 N -0.505 5.505 29 C 0.116 3.884 30 C 0.095 3.905 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.264 0.736 37 H 0.039 0.961 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.141 0.859 42 H 0.076 0.924 43 H 0.413 0.587 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.124 0.876 47 H 0.156 0.844 48 H 0.185 0.815 49 H 0.175 0.825 50 H 0.010 0.990 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 4.400 18.316 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.150 4.150 3 C 0.083 3.917 4 H 0.002 0.998 5 C -0.552 4.552 6 H 0.048 0.952 7 C -0.176 4.176 8 N -0.579 5.579 9 Si 0.741 3.259 10 H -0.211 1.211 11 H -0.213 1.213 12 H -0.142 1.142 13 N -0.234 5.234 14 C -0.103 4.103 15 C -0.110 4.110 16 C -0.118 4.118 17 C -0.168 4.168 18 C -0.185 4.185 19 H 0.186 0.814 20 C 0.328 3.672 21 O -0.464 6.464 22 N -0.361 5.361 23 C 0.046 3.954 24 C -0.160 4.160 25 C -0.095 4.095 26 C -0.191 4.191 27 C -0.054 4.054 28 N -0.214 5.214 29 C -0.041 4.041 30 C -0.033 4.033 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.159 0.841 42 H 0.095 0.905 43 H 0.249 0.751 44 H 0.106 0.894 45 H 0.071 0.929 46 H 0.142 0.858 47 H 0.173 0.827 48 H 0.202 0.798 49 H 0.192 0.808 50 H 0.029 0.971 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.754 4.849 18.796 19.985 hybrid contribution -0.064 -0.121 -2.822 2.826 sum -4.818 4.728 15.973 17.341 Atomic orbital electron populations 1.22244 0.95062 1.01678 1.02680 1.21760 0.95638 0.97052 1.00592 1.19643 0.93731 0.92581 0.85713 0.99783 1.21126 0.92922 1.43573 0.97577 0.95246 1.25667 0.97388 0.94083 1.00458 1.70115 1.21450 1.46256 1.20039 0.86342 0.82612 0.77870 0.79095 1.21058 1.21269 1.14165 1.64738 1.17251 1.17969 1.23432 1.23661 0.89424 1.00280 0.96897 1.22109 0.97609 0.93381 0.97899 1.21898 0.99965 0.91489 0.98400 1.23099 1.00092 0.94740 0.98895 1.22342 0.89634 1.06190 1.00295 0.81419 1.20199 0.87991 0.80325 0.78668 1.90681 1.83679 1.34117 1.37897 1.45893 1.05331 1.38704 1.46200 1.19999 0.79324 0.98209 0.97910 1.20728 1.01827 0.96513 0.96944 1.21773 0.94262 0.93198 1.00221 1.22441 0.99204 1.01929 0.95493 1.23320 0.95757 0.92272 0.94043 1.67807 1.10897 1.05640 1.37060 1.22953 0.92712 0.99207 0.89219 1.21807 0.97502 0.88754 0.95250 0.92117 0.89733 0.94166 0.94273 0.92231 0.92708 0.94280 0.88245 0.88854 0.87739 0.84108 0.90549 0.75106 0.89379 0.92916 0.85792 0.82679 0.79773 0.80836 0.97136 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 8.72 71.98 0.63 -4.37 16 2 C -0.11 -4.61 4.48 30.60 0.14 -4.47 16 3 C 0.19 8.87 0.94 44.17 0.04 8.91 16 4 H -0.02 -0.73 6.49 -2.39 -0.02 -0.74 16 5 C -0.51 -29.63 8.43 25.60 0.22 -29.41 16 6 H 0.03 1.92 7.52 -2.91 -0.02 1.89 16 7 C 0.02 1.31 5.17 84.66 0.44 1.74 16 8 N -0.94 -59.17 13.96 21.45 0.30 -58.87 16 9 Si 0.92 44.11 25.80 68.60 1.77 45.88 16 10 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.22 -9.38 4.93 99.48 0.49 -8.89 16 13 N -0.51 -20.07 5.10 -862.49 -4.40 -24.47 16 14 C 0.02 0.69 4.55 86.69 0.39 1.09 16 15 C -0.07 -1.52 6.83 31.64 0.22 -1.30 16 16 C -0.12 -3.13 2.44 -52.19 -0.13 -3.25 16 17 C -0.13 -3.16 9.78 30.41 0.30 -2.86 16 18 C -0.16 -3.78 6.06 -11.73 -0.07 -3.85 16 19 H 0.17 2.45 8.14 -2.38 -0.02 2.43 16 20 C 0.54 16.10 6.33 87.66 0.55 16.66 16 21 O -0.58 -22.59 16.46 -3.04 -0.05 -22.64 16 22 N -0.71 -17.69 5.55 -466.78 -2.59 -20.28 16 23 C 0.17 4.23 5.82 85.64 0.50 4.73 16 24 C -0.16 -3.49 5.27 -19.77 -0.10 -3.59 16 25 C -0.07 -1.62 9.86 22.47 0.22 -1.39 16 26 C -0.17 -3.34 10.11 22.36 0.23 -3.12 16 27 C 0.10 1.86 11.18 84.69 0.95 2.81 16 28 N -0.51 -10.74 10.36 -195.84 -2.03 -12.77 16 29 C 0.12 2.31 10.86 84.67 0.92 3.23 16 30 C 0.10 3.77 5.10 86.20 0.44 4.21 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 2.21 4.53 -2.39 -0.01 2.20 16 33 H 0.04 1.29 7.39 -2.39 -0.02 1.27 16 34 H 0.04 1.76 5.30 -2.39 -0.01 1.74 16 35 H 0.06 2.43 8.13 -2.39 -0.02 2.41 16 36 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 37 H 0.04 1.13 7.46 -2.39 -0.02 1.11 16 38 H 0.10 2.49 6.25 -2.38 -0.01 2.47 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.10 1.52 8.12 -2.38 -0.02 1.50 16 41 H 0.14 2.29 8.14 -2.39 -0.02 2.28 16 42 H 0.08 2.33 7.82 -2.39 -0.02 2.31 16 43 H 0.41 8.55 8.46 -92.71 -0.78 7.76 16 44 H 0.09 2.02 8.09 -2.38 -0.02 2.00 16 45 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 46 H 0.12 3.36 8.06 -2.91 -0.02 3.34 16 47 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 48 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 49 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 50 H 0.01 0.48 7.71 -2.39 -0.02 0.46 16 51 H 0.04 1.90 7.01 -2.39 -0.02 1.88 16 Total: -1.00 -77.79 399.80 -1.19 -78.98 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: -0.06 Total: 28.40 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 5.87 Total: -14.24 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -8.72 Total: -116.38 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.77 Total: 45.88 kcal Total: -77.79 -1.19 -78.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170480.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.128 kcal (2) G-P(sol) polarization free energy of solvation -77.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds